NO04G00720.1, NO04G00720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00720.1
Unique NameNO04G00720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2118
Alignment locationchr4:248570..251023 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:248570..251023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00720.1 vs.
Match: EWM28497.1 (hypothetical protein Naga_100058g26 [Nannochloropsis gaditana])

HSP 1 Score: 155.6 bits (392), Expect = 1.600e-34
Identity = 75/110 (68.18%), Postives = 97/110 (88.18%), Query Frame = 0 
Query:    1 MSDTINTIINAVKEMVNDMGDKVTTAVKESLHVPENLGPLVTTLKDLVSTGKKFAAGEGSSDELAGLTTQLGQFSTMVDTLDDGPLKKMVLALRDQAMGQLKDVKGAEKI 111
            M+D +NTII+AVKEMV D+G+KV  AVK++LHVP+N  P+V TLK+LV++G+KFA+GEGS++EL GL+T+L  FS MVDTL+DGPLKKMVL LRDQA+ QLKDVKG+EK+
Sbjct:    1 MADAVNTIIDAVKEMVQDVGEKVGAAVKDALHVPDNFAPMVQTLKELVTSGQKFASGEGSTEELNGLSTKLSSFSAMVDTLEDGPLKKMVLTLRDQAVSQLKDVKGSEKV 110
The following BLAST results are available for this feature:
BLAST of NO04G00720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28497.11.600e-3468.18hypothetical protein Naga_100058g26 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00720NO04G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00720.1NO04G00720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00720.1.cds1NO04G00720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00720.1.cds2NO04G00720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00720.1.cds3NO04G00720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00720.1 ID=NO04G00720.1|Name=NO04G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2118bp
GGTTGAGCGAGCTGGCGAAAGGTCGGCGAGCGGATCATCAGGGGCTGTTG
TCTGTTCGTTTGTATAGTACTTGCCCTTCCTGTCCGCAATATATACTCCT
ACAGGCCTGCATTTCAAGCATTGTCTCTGCGTGATCATCTTACATAGGAT
ATTGGCTATAGCGTGGAAGCATTGGAAGGTCAGTTTGGCCATTATCAAGC
ATTTACGGAAGAGAGCGGTGGTGACGGACAATTTTAATGCTGCGCTTCCG
AAGGGTTGTTGATGATTTGCCCACCACTGCGACTGTCGGACATAGACAGT
GCGGGGGCATGATCACTGCTGACAATATGACTGTATGCAGAGCAACTGGC
TTAACTATCCTCAGGGGTGCCTTGTGCCAACGAGACTTGTCCCTCTTTTA
TGGGGTTGCACGCTGCCCCATCTTGTCTGAAGGGATACACTCCTCCCCAC
ATGCACCGGACACTACCACCATTACACGGCTACGATCACGGCAACATACA
CCTCCGGTCTTCGCTTCGTCCACATGCTGCGAACGTGCCACGTGCCTACA
TGTGGTGTCGCCCTGTGCTGCTGTTTGCGCTGCTGTTGTGCCCGGGGAGG
TATTAGCACCTGGGGCCTCTTACGCGCCATGCTCATTTCCCTGACGTGAC
AGCTTACTTTTAAGCGCCAATTTTCGACAGTAGTCACAATGTTATTGTGT
TACTCACTATAGGTACTTGGCGGAAGACCTACTCATAGTGTGTCCTGTAC
TGTTGCGTTTTCTTCCTTGCATTAACCCTCCCATCACGCCCCATTTTTCC
CTCCATCCCCCCATTCCACATGAACAGCCAACACTCTCCACCTTACCACC
ACCCAAGCCAAACAAATGTCCGACACGATTAACACCATTATCAACGCGGT
CAAGGAGATGGTCAACGACATGGGTGACAAGGTAACGACTGCCGTCAAGG
AGTCCCTCCACGTGCCTGAGAATTTGGGGCCCCTCGTGACAACCCTCAAG
GACCTCGTCAGCACCGGCAAGAAGTTCGCCGCCGGCGAAGGCAGCAGTGA
CGAACTCGCAGGCCTTACCACTCAACTAGGCCAATTTTCCACGATGGTCG
ACACACTAGATGATGGCCCTTTGAAAAAAATGGTGCTGGCGCTCCGTGAT
CAGGCCATGGGACAGCTGAAAGATGTGAAGGGCGCGGAAAAGATCATGAA
GATCCTTGCCGTTCTAGGGACCGACTCCAGCGCCACTGCCACCCCATCTG
CCTCTCCCAGCCCTCCCGTTGTCGAGGCATCCATCGATACACCCGCTACT
GCTGCTGCTCCTGCTCCTGCTGCTTCCGCTGCTGCTGCTGCTGCTGCTCC
TGCAACACCCGCGGTTGAGGAGGCAGTTGCTTCAACGCTTGCCGCGGCGG
TGGCAGAAACTGTTCCGGCAGTAGCACCAACAGCCACGGCCACAGCTGCG
ATTATCCCTCCTACTCAGGCGATGACATAAGCCTGGAGTGGGAAGGAAAG
TCGGAAGGAAAGATGCGGGGGTTTCACTCTTCCTATGTCTCTTTTGGAGG
AACCGAAGTGAGGAGGGTCAGGAAGAGAGGAAGCAAATTAGGAGCTTGGA
TCTGAAACGGAGGATTTGGATTAATTTTATTTATTTATTCATTTAAAAAA
GGGTTGGAATTTCTGAGAAAGGAATTTAAGGTGCATATGTGTATGTGAGT
GTATGAGTATAATGTAAGGGTATGGAAGATACCTTCACGTGTGATAGTCT
ACTATTGATGGTAATGATGCTGTGTCTACAATGAAAACACCGACGCCGAT
GACGACGATACGAGGCGATGGTGGCAAGGAGGGGAAGGAGGCCGAGGAAG
ATGTAGAGGAGGAGGAGAAGGAGGAGGAAGAGATGGAGGAGGAGGAGAAA
GGAGGAGAAGGGGCTTCGCGGCTGAAGCACGGTGACGTGATTTCACTCCT
CCTGGTTGTATGTCTGTTTTCTTATAACTTCGTTGGGCAGAATCGAGGGC
GACATGCTCCTGGGTCTCGGTTGGAAGGTGGGGAGAGGGCGGTGGGACTT
GTATCGTCCGAAACAGGGAAAAGGGGAACTCGACAAAGAATGAATGATCT
TAAGGTAATGGTAATGAT
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protein sequence of NO04G00720.1

>NO04G00720.1-protein ID=NO04G00720.1-protein|Name=NO04G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MSDTINTIINAVKEMVNDMGDKVTTAVKESLHVPENLGPLVTTLKDLVST
GKKFAAGEGSSDELAGLTTQLGQFSTMVDTLDDGPLKKMVLALRDQAMGQ
LKDVKGAEKIMKILAVLGTDSSATATPSASPSPPVVEASIDTPATAAAPA
PAASAAAAAAAPATPAVEEAVASTLAAAVAETVPAVAPTATATAAIIPPT
QAMT*
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mRNA from alignment at chr4:248570..251023+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00720.1 ID=NO04G00720.1|Name=NO04G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2454bp|location=Sequence derived from alignment at chr4:248570..251023+ (Nannochloropsis oceanica)
GGTTGAGCGAGCTGGCGAAAGGTCGGCGAGCGGATCATCAGGGGCTGTTG
TCTGTTCGTTTGTATAGTACTTGCCCTTCCTGTCCGCAATATATACTCCT
ACAGGCCTGCATTTCAAGCATTGTCTCTGCGTGATCATCTTACATAGGAT
ATTGGCTATAGCGTGGAAGCATTGGAAGGTCAGTTTGGCCATTATCAAGC
ATTTACGGAAGAGAGCGGTGGTGACGGACAATTTTAATGCTGCGCTTCCG
AAGGGTTGTTGATGATTTGCCCACCACTGCGACTGTCGGACATAGACAGT
GCGGGGGCATGATCACTGCTGACAATATGACTGTATGCAGAGCAACTGGC
TTAACTATCCTCAGGGGTGCCTTGTGCCAACGAGACTTGTCCCTCTTTTA
TGGGGTTGCACGCTGCCCCATCTTGTCTGAAGGGATACACTCCTCCCCAC
ATGCACCGGACACTACCACCATTACACGGCTACGATCACGGCAACATACA
CCTCCGGTCTTCGCTTCGTCCACATGCTGCGAACGTGCCACGTGCCTACA
TGTGGTGTCGCCCTGTGCTGCTGTTTGCGCTGCTGTTGTGCCCGGGGAGG
TATTAGCACCTGGGGCCTCTTACGCGCCATGCTCATTTCCCTGACGTGAC
AGCTTACTTTTAAGCGCCAATTTTCGACAGTAGTCACAATGTTATTGTGT
TACTCACTATAGGTACTTGGCGGAAGACCTACTCATAGTGTGTCCTGTAC
TGTTGCGTTTTCTTCCTTGCATTAACCCTCCCATCACGCCCCATTTTTCC
CTCCATCCCCCCATTCCACATGAACAGCCAACACTCTCCACCTTACCACC
ACCCAAGCCAAACAAATGTCCGACACGATTAACACCATTATCAACGCGGT
CAAGGAGATGGTCAACGACATGGGTGACAAGGTAACGACTGCCGTCAAGG
AGTCCCTCCACGTGCCTGAGAATTTGGGGCCCCTCGTGACAACCCTCAAG
GACCTCGTCAGCACCGGCAAGAAGGTTCGTTTTACCATGTATCCCCACTT
CCTTACCTTCTTCTGTCTCTTCCTTTCTCTCGGGCCATTCAAAACCCGAC
TTCCCTTCCTCGTTCCCTCCCTCCCCTCCAGTTCGCCGCCGGCGAAGGCA
GCAGTGACGAACTCGCAGGCCTTACCACTCAACTAGGCCAATTTTCCACG
ATGGTCGACACACTAGATGATGGCCCTTTGAAAAAAATGGTGCTGGCGCT
CCGTGATCAGGCCATGGGACAGCTGAAAGATGTGAAGGGCGCGGAAAAGG
TCCGTGGCTAGTTGTTTTCCCCCTTCTTTTTTCTCTTTGTTCCAATCCTC
TCTCCTTTTGGTGATTCCCATTCCTCCTCTATGAATTTGTTTCAATCGAG
GTAACCCACATCGATCCTCCCGTCCTTTCTCACATCCTTTTCTATCTCCG
TGCATCATTACTCCCTAGCCCATCATTATCACCCACGCCTACCTCCCTTC
CCTCCTCTCTCCTCCCGGAACAAATCAGATCATGAAGATCCTTGCCGTTC
TAGGGACCGACTCCAGCGCCACTGCCACCCCATCTGCCTCTCCCAGCCCT
CCCGTTGTCGAGGCATCCATCGATACACCCGCTACTGCTGCTGCTCCTGC
TCCTGCTGCTTCCGCTGCTGCTGCTGCTGCTGCTCCTGCAACACCCGCGG
TTGAGGAGGCAGTTGCTTCAACGCTTGCCGCGGCGGTGGCAGAAACTGTT
CCGGCAGTAGCACCAACAGCCACGGCCACAGCTGCGATTATCCCTCCTAC
TCAGGCGATGACATAAGCCTGGAGTGGGAAGGAAAGTCGGAAGGAAAGAT
GCGGGGGTTTCACTCTTCCTATGTCTCTTTTGGAGGAACCGAAGTGAGGA
GGGTCAGGAAGAGAGGAAGCAAATTAGGAGCTTGGATCTGAAACGGAGGA
TTTGGATTAATTTTATTTATTTATTCATTTAAAAAAGGGTTGGAATTTCT
GAGAAAGGAATTTAAGGTGCATATGTGTATGTGAGTGTATGAGTATAATG
TAAGGGTATGGAAGATACCTTCACGTGTGATAGTCTACTATTGATGGTAA
TGATGCTGTGTCTACAATGAAAACACCGACGCCGATGACGACGATACGAG
GCGATGGTGGCAAGGAGGGGAAGGAGGCCGAGGAAGATGTAGAGGAGGAG
GAGAAGGAGGAGGAAGAGATGGAGGAGGAGGAGAAAGGAGGAGAAGGGGC
TTCGCGGCTGAAGCACGGTGACGTGATTTCACTCCTCCTGGTTGTATGTC
TGTTTTCTTATAACTTCGTTGGGCAGAATCGAGGGCGACATGCTCCTGGG
TCTCGGTTGGAAGGTGGGGAGAGGGCGGTGGGACTTGTATCGTCCGAAAC
AGGGAAAAGGGGAACTCGACAAAGAATGAATGATCTTAAGGTAATGGTAA
TGAT
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Coding sequence (CDS) from alignment at chr4:248570..251023+

>NO04G00720.1 ID=NO04G00720.1|Name=NO04G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at chr4:248570..251023+ (Nannochloropsis oceanica)
ATGTCCGACACGATTAACACCATTATCAACGCGGTCAAGGAGATGGTCAA
CGACATGGGTGACAAGGTAACGACTGCCGTCAAGGAGTCCCTCCACGTGC
CTGAGAATTTGGGGCCCCTCGTGACAACCCTCAAGGACCTCGTCAGCACC
GGCAAGAAGTTCGCCGCCGGCGAAGGCAGCAGTGACGAACTCGCAGGCCT
TACCACTCAACTAGGCCAATTTTCCACGATGGTCGACACACTAGATGATG
GCCCTTTGAAAAAAATGGTGCTGGCGCTCCGTGATCAGGCCATGGGACAG
CTGAAAGATGTGAAGGGCGCGGAAAAGATCATGAAGATCCTTGCCGTTCT
AGGGACCGACTCCAGCGCCACTGCCACCCCATCTGCCTCTCCCAGCCCTC
CCGTTGTCGAGGCATCCATCGATACACCCGCTACTGCTGCTGCTCCTGCT
CCTGCTGCTTCCGCTGCTGCTGCTGCTGCTGCTCCTGCAACACCCGCGGT
TGAGGAGGCAGTTGCTTCAACGCTTGCCGCGGCGGTGGCAGAAACTGTTC
CGGCAGTAGCACCAACAGCCACGGCCACAGCTGCGATTATCCCTCCTACT
CAGGCGATGACATAA
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Synonyms
Publications