NO04G00700.1, NO04G00700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00700.1
Unique NameNO04G00700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1365
Alignment locationchr4:242032..244106 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:242032..244106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00700.1 vs.
Match: EWM28487.1 (Protein of unknown function DUF72 [Nannochloropsis gaditana])

HSP 1 Score: 254.2 bits (648), Expect = 7.600e-64
Identity = 217/489 (44.38%), Postives = 273/489 (55.83%), Query Frame = 0 
Query:   16 SHGRLFLGTAGYSYPHWRKSFYPHGLSHAKELQFYAQTFNACEINTTFYGVPSEATIATWIAQVQPVNPNFKFTLKMKKTITHGGEATRSRSANTSSNTPTDVSPSSSSPPSSFSSSSLLKKEQHSRPLHPAALSHELPLFFDRASLLPPSLRGPILFQFPPSFTLDLLSLHRLATALHPYTSLVSPC---PWKVAFEFRHPSWFCAETYTFLHSHGWILVLHALPQ----TKALSKEI-EELPSPSCVYLRLHGLKEEHAWDYSREELALGGDANNSFFWRE-ENKGGSGGTR-----GGGRGGGKKRREREDDGEGKMDGGRLSVGNEQTGESGGREE---RQAKAGIEERQETAPATSVPLPGVYWKSANTLPSPIGGG------GGGGGGRGGGGGRGGGGGGGGGGGGGGGG---------------------------------GGGGLKTKTTPSSNSSTKSRSPGSGSM--LRITQFFGKK 447
            S G+ +LGTAGY+YPHWR+ FYP GL HAKEL+FYAQT N CE+NTTFYG+PSEAT+ +WI QV+PVNPNF+F LKMKKT+THGGEA    + ++  N      P++++P S  ++ S L KE +S PLHPAAL+HELPLFF RAS LPPS+RGPILFQFPPS+T DL SLHRLA AL  Y S  +P     W+ A EFRHPSWFC   ++FLH   W LVLHALP+     +AL+ E+   + S   VYLRLHGLKEEHAWDY+REE  L     N   WRE E + G  G R     G   GG        +D EG+     L +G +   E+ GR E   R+ +AG+   +     T+    G   +      + +G        GG    R    GR    G G  G  GG                                     GG K K   +S++++K+  P +      RITQFFG K
Sbjct:   14 SPGQFYLGTAGYTYPHWRRCFYPPGLPHAKELRFYAQTLNTCEVNTTFYGIPSEATMTSWIEQVRPVNPNFRFALKMKKTVTHGGEA----NIDSDINDAKPSVPAAANPTSPAAAGSRL-KEHYSHPLHPAALAHELPLFFKRASSLPPSMRGPILFQFPPSYTCDLSSLHRLADALDMYVSRPTPTSSPQWRCALEFRHPSWFCPAVFSFLHVQEWALVLHALPKQQQHEQALAAEVARPITSSHFVYLRLHGLKEEHAWDYTREE--LDEYVRNIKKWREGEGESGVAGGREEEEEGEFTGGRDVYVYFLNDAEGRAPENALLMG-QMVAEAMGRGEKAPRKPRAGVAITKYFGGRTNEGAEGESREDEALQRTTVGFQSERQKLGGKKRARLEACGRDFQEGEGNAGDTGGRSEERRGRVEREETVGTRSGPRDLLRSASSSELEEDTGGKKGKDEGASDATSKNMGPSTSGKGPARITQFFGPK 494
The following BLAST results are available for this feature:
BLAST of NO04G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28487.17.600e-6444.38Protein of unknown function DUF72 [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00700NO04G00700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00700.1NO04G00700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00700.1.cds1NO04G00700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00700.1.cds2NO04G00700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00700.1.cds3NO04G00700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00700.1.cds4NO04G00700.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00700.1 ID=NO04G00700.1|Name=NO04G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
ATGAAGGGGGAGCAGGACAATGGTACCACTAACGTCCCTCCTGCATCGCA
TGGCCGCCTCTTCCTTGGGACGGCGGGTTATTCGTACCCACACTGGCGGA
AGAGCTTTTACCCTCACGGACTATCCCATGCCAAGGAGTTGCAGTTTTAC
GCCCAGACGTTCAACGCGTGCGAGATAAACACCACCTTTTATGGCGTACC
GAGCGAAGCAACAATCGCCACCTGGATTGCCCAAGTCCAGCCCGTCAACC
CAAACTTCAAATTCACGCTCAAGATGAAGAAAACCATCACCCACGGGGGG
GAAGCCACCAGGAGCAGGAGCGCCAATACCAGCAGCAACACGCCGACAGA
TGTCTCCCCCTCATCCTCTTCTCCACCTTCCTCCTTCTCCTCCTCCTCTC
TACTCAAAAAAGAGCAACACTCCCGCCCCCTGCATCCTGCCGCTCTCTCA
CACGAGCTTCCCCTTTTCTTCGATCGCGCCTCCCTCCTCCCTCCCTCCCT
TCGTGGCCCCATACTCTTTCAATTCCCCCCTTCGTTCACCCTTGACCTCC
TCTCCCTCCACCGCCTCGCCACTGCCCTCCATCCCTACACATCTCTTGTT
TCCCCCTGTCCCTGGAAGGTCGCCTTCGAATTCCGTCATCCCTCGTGGTT
TTGCGCGGAGACGTACACCTTCCTTCACTCCCACGGGTGGATCCTCGTCC
TCCATGCGCTCCCTCAAACCAAAGCTCTAAGCAAGGAGATCGAGGAGCTG
CCTTCTCCTTCGTGTGTCTACTTAAGGCTGCATGGACTGAAGGAAGAGCA
TGCCTGGGATTACTCACGGGAGGAACTAGCGTTAGGCGGGGATGCAAATA
ACTCGTTTTTTTGGCGCGAAGAAAACAAAGGAGGAAGTGGTGGAACGAGG
GGGGGGGGACGAGGGGGAGGGAAGAAGAGGAGGGAGAGAGAGGACGATGG
GGAGGGGAAAATGGATGGAGGGCGTTTAAGTGTGGGTAACGAACAAACGG
GTGAATCCGGAGGAAGGGAAGAGAGGCAAGCGAAGGCAGGGATAGAGGAG
AGGCAGGAAACGGCGCCTGCAACGTCAGTCCCTCTGCCGGGAGTTTACTG
GAAAAGTGCGAACACGCTGCCTTCGCCTATAGGAGGAGGAGGAGGGGGGG
GGGGAGGAAGAGGAGGAGGAGGCGGCCGCGGTGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTGAAGACAAA
GACGACCCCGAGCAGCAACAGTAGTACAAAGAGCAGGAGCCCCGGCAGTG
GGAGCATGCTTCGCATCACTCAATTTTTTGGGAAGAAGGTGATGGACGAC
AAACAGCAGCGCTAG
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protein sequence of NO04G00700.1

>NO04G00700.1-protein ID=NO04G00700.1-protein|Name=NO04G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MKGEQDNGTTNVPPASHGRLFLGTAGYSYPHWRKSFYPHGLSHAKELQFY
AQTFNACEINTTFYGVPSEATIATWIAQVQPVNPNFKFTLKMKKTITHGG
EATRSRSANTSSNTPTDVSPSSSSPPSSFSSSSLLKKEQHSRPLHPAALS
HELPLFFDRASLLPPSLRGPILFQFPPSFTLDLLSLHRLATALHPYTSLV
SPCPWKVAFEFRHPSWFCAETYTFLHSHGWILVLHALPQTKALSKEIEEL
PSPSCVYLRLHGLKEEHAWDYSREELALGGDANNSFFWREENKGGSGGTR
GGGRGGGKKRREREDDGEGKMDGGRLSVGNEQTGESGGREERQAKAGIEE
RQETAPATSVPLPGVYWKSANTLPSPIGGGGGGGGGRGGGGGRGGGGGGG
GGGGGGGGGGGGGLKTKTTPSSNSSTKSRSPGSGSMLRITQFFGKKVMDD
KQQR*
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mRNA from alignment at chr4:242032..244106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00700.1 ID=NO04G00700.1|Name=NO04G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2075bp|location=Sequence derived from alignment at chr4:242032..244106+ (Nannochloropsis oceanica)
ATGAAGGGGGAGCAGGACAATGGTACCACTAACGTCCCTCCTGCATCGCA
TGGCCGCCTCTTCCTTGGGACGGCGGGTTATTCGTACCCACACTGGCGGA
AGAGCTTTTACCCTCACGGTAAGTCTTTTTTGTGTGCTGAGCCTTACGGG
GAGGGAGCACATGTGCATACCCTCGAGCCTCTCCCTGCTCCTTCTTTCAC
GTGCCCTGTGATACATCCGATAATTTGTGATTGTATGGAGACGACGTCGC
ATCATTCCCCCTTTTTTCCGCAACAAAACAAATAGGACTATCCCATGCCA
AGGAGTTGCAGTTTTACGCCCAGACGTTCAACGCGTGCGAGATAAACACC
ACCTTTTATGGTACGCGAGACTTAAAGCATTGAAGGGAGAGGGTTGACTA
TTCATGAGAGTCTATAGTTGCTACTGGGGGAATAGGGAAAAGAAGAGAGT
CGAGAGGTAGAGAGAGGAGGAGGGACATAACAAGGAGAGAAGAGTGCTTG
CCACTTTAGTGCTACCACTGCCACTGTTCGCTGGTTTGGTGCCTGATGTT
TCATTCTCCTTCTCAATCCTTTTCTTGTTCCTCACTTAAATCTCCCTCGT
CCTGCAAGGCGTGCCAGGCACGATGTGAAGGAGCGACAAATGAAAACACA
CTGAAGCAGGTGCCCGCACCAGCCGTCTCCTTACAATACACTCTATTATT
TACGTAAATCCATACGATCAGGCGTACCGAGCGAAGCAACAATCGCCACC
TGGATTGCCCAAGTCCAGCCCGTCAACCCAAACTTCAAATTCACGCTCAA
GATGAAGAAAACCATCACCCACGGGGGGGAAGCCACCAGGAGCAGGAGCG
CCAATACCAGCAGCAACACGCCGACAGATGTCTCCCCCTCATCCTCTTCT
CCACCTTCCTCCTTCTCCTCCTCCTCTCTACTCAAAAAAGAGCAACACTC
CCGCCCCCTGCATCCTGCCGCTCTCTCACACGAGCTTCCCCTTTTCTTCG
ATCGCGCCTCCCTCCTCCCTCCCTCCCTTCGTGGCCCCATACTCTTTCAA
TTCCCCCCTTCGTTCACCCTTGACCTCCTCTCCCTCCACCGCCTCGCCAC
TGCCCTCCATCCCTACACATCTCTTGTTTCCCCCTGTCCCTGGAAGGTCG
CCTTCGAATTCCGTCATCCCTCGTGGTTTTGCGCGGAGACGTACACCTTC
CTTCACTCCCACGGGTGGATCCTCGTCCTCCATGCGCTCCCTCAAACCAA
AGCTCTAAGCAAGGAGATCGAGGAGCTGCCTTCTCCTTCGTGTGTCTACT
TAAGGCTGCATGGACTGAAGGAAGAGCATGCCTGGGATTACTCACGGGAG
GAACTAGCGTTGTATGTGGACAAAGTGAAGAGATGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGCGGGATGTGTACGTTTTTTTCTTGAATG
ACGCCGAAGGAAAGGCACCAGAAAATGCTTTGCTGATGGGGGGAATGGTG
GCTTATGAGATGGGAGAGGGGGAGAGGGCCCCGAGAAAACCAGAGGCGGG
GATGCAAATAACTCGTTTTTTTGGCGCGAAGAAAACAAAGGAGGAAGTGG
TGGAACGAGGGGGGGGGGACGAGGGGGAGGGAAGAAGAGGAGGGAGAGAG
AGGACGATGGGGAGGGGAAAATGGATGGAGGGCGTTTAAGTGTGGGTAAC
GAACAAACGGGTGAATCCGGAGGAAGGGAAGAGAGGCAAGCGAAGGCAGG
GATAGAGGAGAGGCAGGAAACGGCGCCTGCAACGTCAGTCCCTCTGCCGG
GAGTTTACTGGAAAAGTGCGAACACGCTGCCTTCGCCTATAGGAGGAGGA
GGAGGGGGGGGGGGAGGAAGAGGAGGAGGAGGCGGCCGCGGTGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAT
TGAAGACAAAGACGACCCCGAGCAGCAACAGTAGTACAAAGAGCAGGAGC
CCCGGCAGTGGGAGCATGCTTCGCATCACTCAATTTTTTGGGAAGAAGGT
GATGGACGACAAACAGCAGCGCTAG
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Coding sequence (CDS) from alignment at chr4:242032..244106+

>NO04G00700.1 ID=NO04G00700.1|Name=NO04G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at chr4:242032..244106+ (Nannochloropsis oceanica)
ATGAAGGGGGAGCAGGACAATGGTACCACTAACGTCCCTCCTGCATCGCA
TGGCCGCCTCTTCCTTGGGACGGCGGGTTATTCGTACCCACACTGGCGGA
AGAGCTTTTACCCTCACGGACTATCCCATGCCAAGGAGTTGCAGTTTTAC
GCCCAGACGTTCAACGCGTGCGAGATAAACACCACCTTTTATGGCGTACC
GAGCGAAGCAACAATCGCCACCTGGATTGCCCAAGTCCAGCCCGTCAACC
CAAACTTCAAATTCACGCTCAAGATGAAGAAAACCATCACCCACGGGGGG
GAAGCCACCAGGAGCAGGAGCGCCAATACCAGCAGCAACACGCCGACAGA
TGTCTCCCCCTCATCCTCTTCTCCACCTTCCTCCTTCTCCTCCTCCTCTC
TACTCAAAAAAGAGCAACACTCCCGCCCCCTGCATCCTGCCGCTCTCTCA
CACGAGCTTCCCCTTTTCTTCGATCGCGCCTCCCTCCTCCCTCCCTCCCT
TCGTGGCCCCATACTCTTTCAATTCCCCCCTTCGTTCACCCTTGACCTCC
TCTCCCTCCACCGCCTCGCCACTGCCCTCCATCCCTACACATCTCTTGTT
TCCCCCTGTCCCTGGAAGGTCGCCTTCGAATTCCGTCATCCCTCGTGGTT
TTGCGCGGAGACGTACACCTTCCTTCACTCCCACGGGTGGATCCTCGTCC
TCCATGCGCTCCCTCAAACCAAAGCTCTAAGCAAGGAGATCGAGGAGCTG
CCTTCTCCTTCGTGTGTCTACTTAAGGCTGCATGGACTGAAGGAAGAGCA
TGCCTGGGATTACTCACGGGAGGAACTAGCGTTAGGCGGGGATGCAAATA
ACTCGTTTTTTTGGCGCGAAGAAAACAAAGGAGGAAGTGGTGGAACGAGG
GGGGGGGGACGAGGGGGAGGGAAGAAGAGGAGGGAGAGAGAGGACGATGG
GGAGGGGAAAATGGATGGAGGGCGTTTAAGTGTGGGTAACGAACAAACGG
GTGAATCCGGAGGAAGGGAAGAGAGGCAAGCGAAGGCAGGGATAGAGGAG
AGGCAGGAAACGGCGCCTGCAACGTCAGTCCCTCTGCCGGGAGTTTACTG
GAAAAGTGCGAACACGCTGCCTTCGCCTATAGGAGGAGGAGGAGGGGGGG
GGGGAGGAAGAGGAGGAGGAGGCGGCCGCGGTGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTGAAGACAAA
GACGACCCCGAGCAGCAACAGTAGTACAAAGAGCAGGAGCCCCGGCAGTG
GGAGCATGCTTCGCATCACTCAATTTTTTGGGAAGAAGGTGATGGACGAC
AAACAGCAGCGCTAG
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Synonyms
Publications