NO04G00690.1, NO04G00690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00690.1
Unique NameNO04G00690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1223
Alignment locationchr4:240327..241549 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:240327..241549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G00690.1 vs.
Match: EWM28494.1 (replication protein a 32 kda [Nannochloropsis gaditana])

HSP 1 Score: 412.9 bits (1060), Expect = 8.200e-112
Identity = 218/300 (72.67%), Postives = 252/300 (84.00%), Query Frame = 0
Query:    1 MSYGGYEYGAPTDAYGGGGGGGFMPGHGDFQGGAMGFGSPDAGAGGGG--KVSKEQKTLLPLTVHQLLNAGQDEPDAPTFTVDGCDLHQVKIVGQVLEIVETATMRAYKVDDGTGVLSCRVFVEQDETEYAQERRSYCQKGSYIRVVGQLREYQGQRHLSVHDMRVVKDGNEITHHLLEVIWVHCQNTKGRMQKPGAVGVMGMGLGNMAGGMMGGYGQ---KMM---GGGVGGGMSNLNQAVLDAFMEHNDGDVGADLATVIRSLSTRNITPQQVQQAVDFLAQEGQLYTTTDENHYKAT 293
            MSYGG+EYGAP D YGGGGGG FMPG GD+QG  MGFGSP  G  GGG  K SKEQKTLLPLTVHQ+LNAGQDEPDAPTF VDGCDLHQVKI+GQ+L+IVETA MRAYK+DDGTG+LSC VF EQDE+EYAQERRSYCQKG+Y+ VVGQ+R+YQG+RH+SVHDMRVVKDGNEIT+HLLE IWVHCQNTKGRM KPGA    GMGLG   G  MGGYG    KMM    GG+ GG +++++AVL+AFME++ GD GA+LATV+R+LS + ++  Q+QQA +FLAQEG+LYTT DENHYK T
Sbjct:    1 MSYGGFEYGAPADTYGGGGGG-FMPGVGDYQGQGMGFGSPGGGGPGGGPAKPSKEQKTLLPLTVHQVLNAGQDEPDAPTFKVDGCDLHQVKIIGQILDIVETAVMRAYKIDDGTGILSCHVFSEQDESEYAQERRSYCQKGAYVGVVGQVRDYQGKRHVSVHDMRVVKDGNEITYHLLEAIWVHCQNTKGRMLKPGAAVGSGMGLGMGMG--MGGYGGVSGKMMMAGPGGMNGGTNDVHEAVLNAFMEYSMGDNGAELATVVRALSGK-LSANQIQQATEFLAQEGRLYTTLDENHYKPT 296          
The following BLAST results are available for this feature:
BLAST of NO04G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28494.18.200e-11272.67replication protein a 32 kda [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00690NO04G00690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00690.1NO04G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00690.1.cds1NO04G00690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00690.1 ID=NO04G00690.1|Name=NO04G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp
CCACAGACACTCCCACACACAACACCCTCATGTCCTACGGCGGCTACGAA
TACGGCGCACCCACAGACGCTTACGGTGGCGGGGGCGGGGGAGGCTTCAT
GCCCGGCCATGGCGACTTTCAGGGCGGGGCGATGGGCTTTGGGTCTCCCG
ACGCGGGCGCGGGCGGTGGCGGCAAGGTGAGTAAGGAGCAAAAGACACTG
CTGCCTTTGACGGTCCACCAGCTCTTGAACGCGGGGCAGGACGAGCCGGA
CGCGCCGACATTCACGGTGGATGGATGTGATTTGCACCAGGTGAAGATCG
TGGGGCAAGTGCTGGAGATTGTCGAGACAGCGACGATGCGGGCCTACAAG
GTGGATGACGGGACTGGAGTGTTGAGCTGCCGTGTGTTTGTCGAGCAAGA
CGAGACGGAATATGCACAGGAACGACGGAGCTACTGTCAGAAAGGCTCTT
ACATTCGTGTGGTGGGCCAGCTGAGGGAGTACCAGGGACAGAGGCATTTG
AGTGTGCATGACATGCGGGTAGTGAAGGACGGGAACGAGATTACGCACCA
CTTGCTTGAAGTCATTTGGGTGCACTGTCAGAACACTAAGGGGAGGATGC
AGAAGCCTGGGGCGGTAGGGGTGATGGGAATGGGCTTGGGGAACATGGCG
GGAGGAATGATGGGTGGGTATGGACAGAAGATGATGGGAGGGGGAGTAGG
GGGAGGAATGAGCAACCTGAACCAAGCGGTGTTGGACGCGTTCATGGAGC
ATAATGATGGGGATGTGGGCGCGGATCTGGCGACTGTGATTCGGTCATTA
TCGACGCGGAACATCACCCCGCAGCAGGTGCAGCAGGCGGTTGATTTCCT
GGCGCAGGAGGGGCAGCTGTACACGACGACGGATGAGAACCACTACAAGG
CCACTTAGAGGGAGGGGAGGGGGAGGGCGGAAGGGGCTGCAGTGGTAGTG
GTGGGAGCTTGGTTGGGCGGGAAAAGGTGGGTGAGTGCGAAGAGCAAGCA
GGAAGGCGAAGGCAGGATCCGAGAAGGGGGAGAAGGAAGATGTTTACCTG
TGTCCATGTACGTGTGTGGAGACAGAGGATGGAGGGGGGGAAATGATGTG
AAGGGGAGAGGCAACAAAAAGAAATCATGAACAGTGGTAGCAACCCCAAT
GACAACAGAAGCAGCAACGGCGAAATTCCTGCCAAAAGAAAGATATGAAA
ACCCAAAACGAGAGAAACGGGGG
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protein sequence of NO04G00690.1

>NO04G00690.1-protein ID=NO04G00690.1-protein|Name=NO04G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MSYGGYEYGAPTDAYGGGGGGGFMPGHGDFQGGAMGFGSPDAGAGGGGKV
SKEQKTLLPLTVHQLLNAGQDEPDAPTFTVDGCDLHQVKIVGQVLEIVET
ATMRAYKVDDGTGVLSCRVFVEQDETEYAQERRSYCQKGSYIRVVGQLRE
YQGQRHLSVHDMRVVKDGNEITHHLLEVIWVHCQNTKGRMQKPGAVGVMG
MGLGNMAGGMMGGYGQKMMGGGVGGGMSNLNQAVLDAFMEHNDGDVGADL
ATVIRSLSTRNITPQQVQQAVDFLAQEGQLYTTTDENHYKAT*
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mRNA from alignment at chr4:240327..241549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00690.1 ID=NO04G00690.1|Name=NO04G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp|location=Sequence derived from alignment at chr4:240327..241549- (Nannochloropsis oceanica)
CCACAGACACTCCCACACACAACACCCTCATGTCCTACGGCGGCTACGAA TACGGCGCACCCACAGACGCTTACGGTGGCGGGGGCGGGGGAGGCTTCAT GCCCGGCCATGGCGACTTTCAGGGCGGGGCGATGGGCTTTGGGTCTCCCG ACGCGGGCGCGGGCGGTGGCGGCAAGGTGAGTAAGGAGCAAAAGACACTG CTGCCTTTGACGGTCCACCAGCTCTTGAACGCGGGGCAGGACGAGCCGGA CGCGCCGACATTCACGGTGGATGGATGTGATTTGCACCAGGTGAAGATCG TGGGGCAAGTGCTGGAGATTGTCGAGACAGCGACGATGCGGGCCTACAAG GTGGATGACGGGACTGGAGTGTTGAGCTGCCGTGTGTTTGTCGAGCAAGA CGAGACGGAATATGCACAGGAACGACGGAGCTACTGTCAGAAAGGCTCTT ACATTCGTGTGGTGGGCCAGCTGAGGGAGTACCAGGGACAGAGGCATTTG AGTGTGCATGACATGCGGGTAGTGAAGGACGGGAACGAGATTACGCACCA CTTGCTTGAAGTCATTTGGGTGCACTGTCAGAACACTAAGGGGAGGATGC AGAAGCCTGGGGCGGTAGGGGTGATGGGAATGGGCTTGGGGAACATGGCG GGAGGAATGATGGGTGGGTATGGACAGAAGATGATGGGAGGGGGAGTAGG GGGAGGAATGAGCAACCTGAACCAAGCGGTGTTGGACGCGTTCATGGAGC ATAATGATGGGGATGTGGGCGCGGATCTGGCGACTGTGATTCGGTCATTA TCGACGCGGAACATCACCCCGCAGCAGGTGCAGCAGGCGGTTGATTTCCT GGCGCAGGAGGGGCAGCTGTACACGACGACGGATGAGAACCACTACAAGG CCACTTAGAGGGAGGGGAGGGGGAGGGCGGAAGGGGCTGCAGTGGTAGTG GTGGGAGCTTGGTTGGGCGGGAAAAGGTGGGTGAGTGCGAAGAGCAAGCA GGAAGGCGAAGGCAGGATCCGAGAAGGGGGAGAAGGAAGATGTTTACCTG TGTCCATGTACGTGTGTGGAGACAGAGGATGGAGGGGGGGAAATGATGTG AAGGGGAGAGGCAACAAAAAGAAATCATGAACAGTGGTAGCAACCCCAAT GACAACAGAAGCAGCAACGGCGAAATTCCTGCCAAAAGAAAGATATGAAA ACCCAAAACGAGAGAAACGGGGG
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Coding sequence (CDS) from alignment at chr4:240327..241549-

>NO04G00690.1 ID=NO04G00690.1|Name=NO04G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr4:240327..241549- (Nannochloropsis oceanica)
ATGTCCTACGGCGGCTACGAATACGGCGCACCCACAGACGCTTACGGTGG
CGGGGGCGGGGGAGGCTTCATGCCCGGCCATGGCGACTTTCAGGGCGGGG
CGATGGGCTTTGGGTCTCCCGACGCGGGCGCGGGCGGTGGCGGCAAGGTG
AGTAAGGAGCAAAAGACACTGCTGCCTTTGACGGTCCACCAGCTCTTGAA
CGCGGGGCAGGACGAGCCGGACGCGCCGACATTCACGGTGGATGGATGTG
ATTTGCACCAGGTGAAGATCGTGGGGCAAGTGCTGGAGATTGTCGAGACA
GCGACGATGCGGGCCTACAAGGTGGATGACGGGACTGGAGTGTTGAGCTG
CCGTGTGTTTGTCGAGCAAGACGAGACGGAATATGCACAGGAACGACGGA
GCTACTGTCAGAAAGGCTCTTACATTCGTGTGGTGGGCCAGCTGAGGGAG
TACCAGGGACAGAGGCATTTGAGTGTGCATGACATGCGGGTAGTGAAGGA
CGGGAACGAGATTACGCACCACTTGCTTGAAGTCATTTGGGTGCACTGTC
AGAACACTAAGGGGAGGATGCAGAAGCCTGGGGCGGTAGGGGTGATGGGA
ATGGGCTTGGGGAACATGGCGGGAGGAATGATGGGTGGGTATGGACAGAA
GATGATGGGAGGGGGAGTAGGGGGAGGAATGAGCAACCTGAACCAAGCGG
TGTTGGACGCGTTCATGGAGCATAATGATGGGGATGTGGGCGCGGATCTG
GCGACTGTGATTCGGTCATTATCGACGCGGAACATCACCCCGCAGCAGGT
GCAGCAGGCGGTTGATTTCCTGGCGCAGGAGGGGCAGCTGTACACGACGA
CGGATGAGAACCACTACAAGGCCACTTAG
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Synonyms
Publications