NO04G00680.1, NO04G00680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00680.1
Unique NameNO04G00680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2108
Alignment locationchr4:238195..240302 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:238195..240302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00680.1 vs.
Match: EWM28492.1 (protein phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 554.7 bits (1428), Expect = 2.800e-154
Identity = 305/464 (65.73%), Postives = 355/464 (76.51%), Query Frame = 0 
Query:   11 RVTRSMMTRTATSVDEEDDSGMTSPTSTIQERQEQEKAV----AQRRGDE--HEQQLDDQWHDIPDSPSAAGTTSVQTTHTGLRKARRKLSVVSENVLVDGIQDIHLDETLNVGGDKGSVLPCLVSAYAGKSQKGFAPYHSRKKNQDALIMAEEPHTSTLFFCVLDGHGEFGELVSGFFQRELARNLFAHDCFEHDPRRAFVEVLTALEKALLRDTKVDTDFSGTTMSAVLLRGDRMLVFNCGDSRVTVGVKEEPSTPTAATSTAAVAREGNNSSSSSISKPTPTKIS--SFLSRRSLSLSSSKAATAPPL--LKATALSIDHKPDIPSEKARILAAGGRVFAVRYDDGVDGPQRVWLGHIDAPGLAMSRSLGDAVAHSVGVSSEPEVFEYTLDPKKEVFLILATDGLWEFCSDGEVVTMVGRARDPQDAVEGLIKEATARWLREEQVVDDTTVCVAFLGDWKK 465
            R TRS  TR+ TS             ++I ER ++E AV     ++R +   H ++ + ++ DIP+SPS  G+     T   L KARRKLSVVS N LVDGI DI LDETLNV   KGSVLPCLVSAYAGKSQKGFAPYH RKKNQDALIMAEEPHTSTLFFCVLDGHGEFGELVSGFFQRE+ARNLFAHD FE DPRRA +EV+ ALE AL++D ++DT FSGTT++AVLLRGDR+LVFN GDSRVTV + + P+  TA  S ++ +RE +          TP+K    SFLSRRSLSLS++    +PP   L++  LSIDHKPD+ +EKARILAA GRVFAVRYDDGVDGP RVWL  +D PGLAMSRSLGD VAH+VGVSSEPEVFEYTLD  ++VFL+LATDGLWEF SD EVV MVG A+DPQ+AVE LIKEA  RWL+EEQVVDDTTVCVAFLG+W+K
Sbjct:   10 RTTRS--TRSCTS-------------ASIAERTQEEDAVDGILVEKREETFIHREKHEVEFIDIPESPSPVGSIP-SNTRASLGKARRKLSVVSTNALVDGIHDIRLDETLNVDKQKGSVLPCLVSAYAGKSQKGFAPYHRRKKNQDALIMAEEPHTSTLFFCVLDGHGEFGELVSGFFQREMARNLFAHDHFEQDPRRAVIEVIAALESALVQDRRIDTAFSGTTLTAVLLRGDRVLVFNVGDSRVTVALHDAPN--TADASVSSTSRESSMPMKKETLACTPSKARGLSFLSRRSLSLSTASNLPSPPTPPLRSIRLSIDHKPDVAAEKARILAANGRVFAVRYDDGVDGPARVWLKDLDVPGLAMSRSLGDVVAHTVGVSSEPEVFEYTLDSARDVFLVLATDGLWEFMSDAEVVRMVGVAKDPQEAVETLIKEANTRWLKEEQVVDDTTVCVAFLGEWRK 455
The following BLAST results are available for this feature:
BLAST of NO04G00680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28492.12.800e-15465.73protein phosphatase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00680NO04G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00680.1NO04G00680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00680.1.cds1NO04G00680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00680.1 ID=NO04G00680.1|Name=NO04G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp
GGGAGGCACTTGGCTGGCCCCTCAAACCATTTAGGAGGGGTCACGATTTT
TGTAAGTGTGTGCTCCTGCCAAAGGAGCAAAAGCAGGCCACCAATAAAGA
ACCCTCTTAGCAGAGATGGCCTTCAGCACGACACATATATATGAAGCAAG
ACAAAAACAAACGGGCCGCTTGAACCGCCATTATCGCCAAATTTGAACCA
GAGCCGACCAGAGCGACCACCAGAGCTCCTTCGTCACGAGGTACCAAACT
TAGAAATCACATGCTCTCTATTTTCTAGACCACACATCACACCCATGCAC
TCAATCCTCGCCTTAAAACTCGTTATATAGGGCGCCGCATCCTGCAATCC
AGTCGCTGGAACGCTTCGATTCGCTGCAGATCGTCCCTGTGACAGAGTTA
GTTCCCCGCCCATATCAGATGACAGACCCCATAATCGCCCTCCCGGTCCG
TGTAACTCGGAGCATGATGACCCGCACCGCGACCAGTGTTGACGAGGAGG
ATGACAGCGGCATGACGTCCCCGACGTCGACGATACAGGAGCGTCAGGAG
CAGGAGAAAGCGGTAGCTCAACGGAGGGGGGACGAACACGAACAACAGCT
CGACGACCAGTGGCATGACATTCCGGATTCTCCCTCCGCAGCGGGCACCA
CCTCGGTGCAGACCACGCACACAGGCCTGCGCAAAGCTCGGCGGAAGCTG
AGTGTAGTAAGCGAGAATGTACTTGTCGATGGGATTCAAGACATTCACTT
GGACGAAACGCTGAACGTAGGGGGAGACAAAGGTAGCGTGCTGCCGTGTC
TGGTGAGTGCCTACGCGGGCAAGAGCCAAAAGGGCTTTGCCCCATACCAC
AGCCGAAAAAAGAATCAGGACGCCTTGATTATGGCGGAGGAGCCGCATAC
CTCTACCCTCTTCTTTTGTGTCTTGGATGGCCACGGCGAGTTTGGGGAGC
TCGTCTCAGGGTTTTTCCAAAGAGAACTGGCCCGCAATTTGTTCGCGCAC
GATTGCTTCGAGCATGACCCACGCCGGGCATTCGTCGAGGTTCTGACAGC
ACTGGAGAAGGCATTGCTGCGGGACACGAAGGTTGATACAGATTTTTCGG
GGACCACTATGTCGGCGGTGTTGCTAAGGGGGGATCGCATGCTGGTATTT
AACTGCGGCGACTCCCGCGTCACGGTCGGAGTCAAGGAAGAGCCATCCAC
TCCAACGGCAGCAACATCAACAGCCGCAGTTGCAAGGGAGGGTAACAACT
CTTCCTCGTCCTCCATCTCCAAACCAACCCCCACCAAGATCTCCTCCTTC
CTCTCCCGCCGGTCCCTCTCCCTCTCTTCCTCAAAAGCTGCCACCGCTCC
TCCCCTATTAAAAGCCACCGCGCTCTCGATCGACCACAAGCCAGACATTC
CATCGGAAAAGGCGCGGATTTTGGCAGCAGGCGGAAGGGTGTTTGCCGTC
CGTTACGACGACGGAGTGGACGGGCCTCAGAGGGTGTGGTTAGGCCACAT
CGACGCGCCTGGCTTGGCAATGTCAAGGTCACTGGGGGATGCAGTAGCTC
ACTCAGTGGGAGTGAGCAGCGAGCCGGAGGTGTTTGAATACACCCTGGAT
CCGAAAAAGGAAGTGTTTTTAATCTTGGCCACGGACGGGTTGTGGGAGTT
TTGTAGTGATGGGGAGGTGGTGACCATGGTGGGGAGGGCCAGAGACCCAC
AGGATGCAGTGGAGGGGTTGATCAAAGAGGCGACCGCTCGATGGTTGAGG
GAAGAGCAGGTGGTAGATGACACAACGGTGTGCGTGGCGTTTTTGGGGGA
TTGGAAGAAGTAGGAGGGAAGGAGGGAGCAGGTTGAAAGGGAAGAGGGAA
GAAAGTAAATCGAAGGACGACAGAGCTGTATGAACAAAGAGGCAATCCTC
TGCAGAAAAGGAGAGAAACGGAATGCGCGAAGAGGGAGAGGGGAGGCGGA
GGGGGAGGGAGAGAAAGAAGGACGGATGTAAAGTGGGTATGGATACAATA
GCTGCAGCACTCCCAAAAATGACTATATTCATAAATGTGGAGCAGCCGTG
CCATTGATGCGTTAGCAAGCACGCCTGAGGGAGTCCAAAGAAAAAGCACG
TTATTTAG
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protein sequence of NO04G00680.1

>NO04G00680.1-protein ID=NO04G00680.1-protein|Name=NO04G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MTDPIIALPVRVTRSMMTRTATSVDEEDDSGMTSPTSTIQERQEQEKAVA
QRRGDEHEQQLDDQWHDIPDSPSAAGTTSVQTTHTGLRKARRKLSVVSEN
VLVDGIQDIHLDETLNVGGDKGSVLPCLVSAYAGKSQKGFAPYHSRKKNQ
DALIMAEEPHTSTLFFCVLDGHGEFGELVSGFFQRELARNLFAHDCFEHD
PRRAFVEVLTALEKALLRDTKVDTDFSGTTMSAVLLRGDRMLVFNCGDSR
VTVGVKEEPSTPTAATSTAAVAREGNNSSSSSISKPTPTKISSFLSRRSL
SLSSSKAATAPPLLKATALSIDHKPDIPSEKARILAAGGRVFAVRYDDGV
DGPQRVWLGHIDAPGLAMSRSLGDAVAHSVGVSSEPEVFEYTLDPKKEVF
LILATDGLWEFCSDGEVVTMVGRARDPQDAVEGLIKEATARWLREEQVVD
DTTVCVAFLGDWKK*
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mRNA from alignment at chr4:238195..240302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00680.1 ID=NO04G00680.1|Name=NO04G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2108bp|location=Sequence derived from alignment at chr4:238195..240302+ (Nannochloropsis oceanica)
GGGAGGCACTTGGCTGGCCCCTCAAACCATTTAGGAGGGGTCACGATTTT
TGTAAGTGTGTGCTCCTGCCAAAGGAGCAAAAGCAGGCCACCAATAAAGA
ACCCTCTTAGCAGAGATGGCCTTCAGCACGACACATATATATGAAGCAAG
ACAAAAACAAACGGGCCGCTTGAACCGCCATTATCGCCAAATTTGAACCA
GAGCCGACCAGAGCGACCACCAGAGCTCCTTCGTCACGAGGTACCAAACT
TAGAAATCACATGCTCTCTATTTTCTAGACCACACATCACACCCATGCAC
TCAATCCTCGCCTTAAAACTCGTTATATAGGGCGCCGCATCCTGCAATCC
AGTCGCTGGAACGCTTCGATTCGCTGCAGATCGTCCCTGTGACAGAGTTA
GTTCCCCGCCCATATCAGATGACAGACCCCATAATCGCCCTCCCGGTCCG
TGTAACTCGGAGCATGATGACCCGCACCGCGACCAGTGTTGACGAGGAGG
ATGACAGCGGCATGACGTCCCCGACGTCGACGATACAGGAGCGTCAGGAG
CAGGAGAAAGCGGTAGCTCAACGGAGGGGGGACGAACACGAACAACAGCT
CGACGACCAGTGGCATGACATTCCGGATTCTCCCTCCGCAGCGGGCACCA
CCTCGGTGCAGACCACGCACACAGGCCTGCGCAAAGCTCGGCGGAAGCTG
AGTGTAGTAAGCGAGAATGTACTTGTCGATGGGATTCAAGACATTCACTT
GGACGAAACGCTGAACGTAGGGGGAGACAAAGGTAGCGTGCTGCCGTGTC
TGGTGAGTGCCTACGCGGGCAAGAGCCAAAAGGGCTTTGCCCCATACCAC
AGCCGAAAAAAGAATCAGGACGCCTTGATTATGGCGGAGGAGCCGCATAC
CTCTACCCTCTTCTTTTGTGTCTTGGATGGCCACGGCGAGTTTGGGGAGC
TCGTCTCAGGGTTTTTCCAAAGAGAACTGGCCCGCAATTTGTTCGCGCAC
GATTGCTTCGAGCATGACCCACGCCGGGCATTCGTCGAGGTTCTGACAGC
ACTGGAGAAGGCATTGCTGCGGGACACGAAGGTTGATACAGATTTTTCGG
GGACCACTATGTCGGCGGTGTTGCTAAGGGGGGATCGCATGCTGGTATTT
AACTGCGGCGACTCCCGCGTCACGGTCGGAGTCAAGGAAGAGCCATCCAC
TCCAACGGCAGCAACATCAACAGCCGCAGTTGCAAGGGAGGGTAACAACT
CTTCCTCGTCCTCCATCTCCAAACCAACCCCCACCAAGATCTCCTCCTTC
CTCTCCCGCCGGTCCCTCTCCCTCTCTTCCTCAAAAGCTGCCACCGCTCC
TCCCCTATTAAAAGCCACCGCGCTCTCGATCGACCACAAGCCAGACATTC
CATCGGAAAAGGCGCGGATTTTGGCAGCAGGCGGAAGGGTGTTTGCCGTC
CGTTACGACGACGGAGTGGACGGGCCTCAGAGGGTGTGGTTAGGCCACAT
CGACGCGCCTGGCTTGGCAATGTCAAGGTCACTGGGGGATGCAGTAGCTC
ACTCAGTGGGAGTGAGCAGCGAGCCGGAGGTGTTTGAATACACCCTGGAT
CCGAAAAAGGAAGTGTTTTTAATCTTGGCCACGGACGGGTTGTGGGAGTT
TTGTAGTGATGGGGAGGTGGTGACCATGGTGGGGAGGGCCAGAGACCCAC
AGGATGCAGTGGAGGGGTTGATCAAAGAGGCGACCGCTCGATGGTTGAGG
GAAGAGCAGGTGGTAGATGACACAACGGTGTGCGTGGCGTTTTTGGGGGA
TTGGAAGAAGTAGGAGGGAAGGAGGGAGCAGGTTGAAAGGGAAGAGGGAA
GAAAGTAAATCGAAGGACGACAGAGCTGTATGAACAAAGAGGCAATCCTC
TGCAGAAAAGGAGAGAAACGGAATGCGCGAAGAGGGAGAGGGGAGGCGGA
GGGGGAGGGAGAGAAAGAAGGACGGATGTAAAGTGGGTATGGATACAATA
GCTGCAGCACTCCCAAAAATGACTATATTCATAAATGTGGAGCAGCCGTG
CCATTGATGCGTTAGCAAGCACGCCTGAGGGAGTCCAAAGAAAAAGCACG
TTATTTAG
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Coding sequence (CDS) from alignment at chr4:238195..240302+

>NO04G00680.1 ID=NO04G00680.1|Name=NO04G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at chr4:238195..240302+ (Nannochloropsis oceanica)
ATGACAGACCCCATAATCGCCCTCCCGGTCCGTGTAACTCGGAGCATGAT
GACCCGCACCGCGACCAGTGTTGACGAGGAGGATGACAGCGGCATGACGT
CCCCGACGTCGACGATACAGGAGCGTCAGGAGCAGGAGAAAGCGGTAGCT
CAACGGAGGGGGGACGAACACGAACAACAGCTCGACGACCAGTGGCATGA
CATTCCGGATTCTCCCTCCGCAGCGGGCACCACCTCGGTGCAGACCACGC
ACACAGGCCTGCGCAAAGCTCGGCGGAAGCTGAGTGTAGTAAGCGAGAAT
GTACTTGTCGATGGGATTCAAGACATTCACTTGGACGAAACGCTGAACGT
AGGGGGAGACAAAGGTAGCGTGCTGCCGTGTCTGGTGAGTGCCTACGCGG
GCAAGAGCCAAAAGGGCTTTGCCCCATACCACAGCCGAAAAAAGAATCAG
GACGCCTTGATTATGGCGGAGGAGCCGCATACCTCTACCCTCTTCTTTTG
TGTCTTGGATGGCCACGGCGAGTTTGGGGAGCTCGTCTCAGGGTTTTTCC
AAAGAGAACTGGCCCGCAATTTGTTCGCGCACGATTGCTTCGAGCATGAC
CCACGCCGGGCATTCGTCGAGGTTCTGACAGCACTGGAGAAGGCATTGCT
GCGGGACACGAAGGTTGATACAGATTTTTCGGGGACCACTATGTCGGCGG
TGTTGCTAAGGGGGGATCGCATGCTGGTATTTAACTGCGGCGACTCCCGC
GTCACGGTCGGAGTCAAGGAAGAGCCATCCACTCCAACGGCAGCAACATC
AACAGCCGCAGTTGCAAGGGAGGGTAACAACTCTTCCTCGTCCTCCATCT
CCAAACCAACCCCCACCAAGATCTCCTCCTTCCTCTCCCGCCGGTCCCTC
TCCCTCTCTTCCTCAAAAGCTGCCACCGCTCCTCCCCTATTAAAAGCCAC
CGCGCTCTCGATCGACCACAAGCCAGACATTCCATCGGAAAAGGCGCGGA
TTTTGGCAGCAGGCGGAAGGGTGTTTGCCGTCCGTTACGACGACGGAGTG
GACGGGCCTCAGAGGGTGTGGTTAGGCCACATCGACGCGCCTGGCTTGGC
AATGTCAAGGTCACTGGGGGATGCAGTAGCTCACTCAGTGGGAGTGAGCA
GCGAGCCGGAGGTGTTTGAATACACCCTGGATCCGAAAAAGGAAGTGTTT
TTAATCTTGGCCACGGACGGGTTGTGGGAGTTTTGTAGTGATGGGGAGGT
GGTGACCATGGTGGGGAGGGCCAGAGACCCACAGGATGCAGTGGAGGGGT
TGATCAAAGAGGCGACCGCTCGATGGTTGAGGGAAGAGCAGGTGGTAGAT
GACACAACGGTGTGCGTGGCGTTTTTGGGGGATTGGAAGAAGTAG
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Synonyms
Publications