NO04G00600.1, NO04G00600.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G00600.1
Unique Name	NO04G00600.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1761
Alignment location	chr4:208759..210705 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:208759..210705 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO04G00600.1 vs.
Match: EWM28498.1 (gtp-binding protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 811.6 bits (2095), Expect = 1.600e-231
Identity = 452/589 (76.74%), Postives = 501/589 (85.06%), Query Frame = 0

Query:    1 MDNVTEKLPTALSLKKNEYDINKEVGPSSA---SSPPITNLKELVHESDDVDRFLPADLEDHAVDDEHPTC-MPSEMDDEDVRVAMIGNVDAGKSTLIGVLTNAMLDDGRGSARSLILKHRHEQENGRTSAVTIELLGYRNSGEQVLPSGRTQTNRWQEIVRSSGRTVTLIDLCGHERYLKTTIFGLTGLLPDFALLLVGSNMGVTVMTREHISIACALSIPLAVVLTKVDIAPEPVLKQTRQTLARYLRKNNKLPYPIKDLSQVEAAADSLASDRVTPVFAISSVTGQGLDLLRAFVSRLRRTSPLYQGLSSAPSLSSCP---DAPSIHIPIDGVYEVKGVGLVVGGTILRGHVRPNQSLLLGPDRGGAFVPLSVRSIECRRQPVKEAKQGMSITFAVRSLNKRVTLRRSYFRKGMVLVGAEDRPRPVRDFQASVVILHHATTMAKGYEPVLHMGTVRQAAEMTEILGGEDALRTGSRAEVLFHFRYFAEFLVVGSTFLFREGRAKGIGKVSKLLYPSAQPPPPAAAAAATTAI---------AAAGTGIGSSASSTSTSSSSPAGVSAAGAAGAAGGTVGVTGAARA 574
            MD VT+ L ++L++ K+      E   S A    +   TNL+ELV E  D +RFLPAD++D +   E+    +PS +DD+DVRVAMIGNVDAGKSTLIGVLTNA+LDDGRGSARSL+LKHRHEQENGRTSAVTIELLGY+ +GEQVLP GR QT+RWQEIVRSSGRTVTLIDLCGHERYLKTTIFGLTGLLPDFALLLVGSNMGVTVMTREHI+IACALSIPLAVVLTK+DIAPEPVLKQTRQTLARYLRKNNKLPYPIKD++QVEAAADSLASDRVTPVFAISSVTGQG+DLLRAFVSRLRRT  LYQGL+++P    CP   +APSIHIP+DGVYEVKGVGLVVGGT+LRGHV PNQSLLLGPDR GAF+PLSVRSIECRRQPVKEAK GMSITFAVRSLNK+VTLRRSYFRKGMVLVGAEDRPRPVRDF ASVVILHH+TTM+ GYEPVLHMGTVRQAAEMT+ILGGE+ALRTGSRAEVLFHFRYFAEFLVVGSTFLFREGRAKGIGKVS+LLY S  P  P A++A++TA           A G G+   AS+  TS+++  G    GA G+ GG  GV  A RA
Sbjct:    9 MDVVTKDLSSSLNVNKDNSPPGMEGSGSRALPTGTTQATNLRELVQE--DAERFLPADVDDCSASSENNAAPVPSAVDDDDVRVAMIGNVDAGKSTLIGVLTNAILDDGRGSARSLVLKHRHEQENGRTSAVTIELLGYKGTGEQVLPQGRNQTHRWQEIVRSSGRTVTLIDLCGHERYLKTTIFGLTGLLPDFALLLVGSNMGVTVMTREHIAIACALSIPLAVVLTKIDIAPEPVLKQTRQTLARYLRKNNKLPYPIKDMTQVEAAADSLASDRVTPVFAISSVTGQGMDLLRAFVSRLRRTPRLYQGLTTSP----CPGGSEAPSIHIPVDGVYEVKGVGLVVGGTVLRGHVVPNQSLLLGPDRNGAFLPLSVRSIECRRQPVKEAKVGMSITFAVRSLNKKVTLRRSYFRKGMVLVGAEDRPRPVRDFVASVVILHHSTTMSTGYEPVLHMGTVRQAAEMTQILGGEEALRTGSRAEVLFHFRYFAEFLVVGSTFLFREGRAKGIGKVSRLLYSS--PGAPTASSASSTAATVSPAVQTSVAKGDGV---ASTVRTSAAAGTGEVGRGAGGSGGGGGGVGVAVRA 586

The following BLAST results are available for this feature:

BLAST of NO04G00600.1 vs.

BLAST of NO04G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28498.1	1.600e-231	76.74	gtp-binding protein 1 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G00600	NO04G00600	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G00600.1	NO04G00600.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G00600.1.cds1	NO04G00600.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G00600.1.cds2	NO04G00600.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:208759..210705-
coding sequence from alignment at chr4:208759..210705-

mRNA sequence

>NO04G00600.1 ID=NO04G00600.1|Name=NO04G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1761bp
ATGGATAACGTCACGGAAAAGCTGCCGACCGCCCTCAGCCTCAAAAAAAA
CGAATACGATATCAATAAGGAAGTAGGCCCGTCCTCTGCCTCCTCTCCTC
CTATAACCAATCTAAAGGAGCTTGTGCACGAGAGCGACGATGTTGACCGC
TTTCTCCCCGCGGATCTTGAAGATCATGCTGTTGATGATGAACATCCCAC
CTGCATGCCTTCGGAGATGGATGACGAGGATGTTCGTGTGGCAATGATTG
GGAACGTGGACGCCGGCAAGTCTACCCTCATCGGTGTGCTCACCAACGCC
ATGCTTGACGACGGCCGCGGCTCCGCCCGTTCCCTCATCCTCAAGCACCG
TCATGAGCAAGAGAATGGCCGCACATCCGCCGTCACCATCGAACTCCTGG
GCTACCGTAACTCAGGCGAACAAGTCCTCCCTTCCGGCCGCACCCAAACT
AACCGCTGGCAAGAAATCGTGCGATCCTCAGGACGGACCGTCACCCTCAT
TGACCTCTGCGGCCACGAACGCTATTTGAAAACAACCATCTTTGGACTCA
CAGGCTTGCTGCCCGACTTTGCGTTGCTGCTGGTAGGGAGCAACATGGGT
GTCACCGTCATGACCCGGGAGCACATCTCCATTGCCTGCGCCCTCTCCAT
CCCCCTCGCCGTGGTGCTCACCAAAGTCGACATTGCTCCGGAACCTGTCC
TGAAGCAAACCCGTCAAACCCTTGCCCGATACCTCCGCAAGAACAACAAG
CTCCCGTACCCTATCAAGGACCTTTCGCAGGTAGAGGCGGCGGCGGACTC
CCTCGCCTCGGATCGCGTCACTCCCGTCTTTGCCATCTCCAGCGTCACCG
GCCAAGGGTTGGATCTTCTCCGAGCCTTTGTGTCGCGCTTGCGTCGCACC
TCCCCACTCTACCAAGGCCTTTCCTCCGCCCCTTCACTCTCGTCCTGCCC
TGATGCGCCCTCCATTCATATCCCTATCGACGGGGTCTACGAAGTGAAAG
GCGTGGGGTTGGTAGTGGGAGGAACGATCTTGCGGGGACATGTGCGACCG
AACCAAAGCCTTCTCCTGGGCCCTGATCGAGGTGGGGCGTTCGTTCCTCT
GTCTGTGCGCAGCATTGAATGTCGACGACAGCCGGTCAAGGAAGCGAAGC
AAGGGATGAGCATCACGTTTGCCGTGCGGTCTCTCAATAAACGAGTAACC
TTGAGAAGGTCTTACTTCAGAAAGGGAATGGTACTGGTCGGAGCGGAGGA
CAGACCGAGGCCAGTGAGGGATTTTCAGGCGTCCGTGGTAATTTTGCACC
ATGCCACGACGATGGCGAAGGGGTATGAACCTGTGCTACACATGGGAACC
GTCAGACAAGCGGCGGAAATGACGGAGATATTAGGCGGGGAAGATGCGCT
GCGGACGGGAAGTCGGGCGGAGGTGTTGTTTCATTTCAGGTATTTTGCCG
AGTTCTTGGTCGTCGGATCCACGTTTTTGTTTCGAGAAGGCCGGGCGAAG
GGCATCGGCAAAGTCTCCAAGTTGCTTTATCCGTCAGCCCAACCACCACC
ACCAGCAGCAGCAGCAGCAGCAACAACAGCAATAGCGGCAGCGGGCACCG
GGATAGGGTCGTCTGCCTCTTCGACGTCGACCTCGTCCTCATCGCCAGCA
GGAGTGTCAGCTGCAGGAGCAGCAGGAGCAGCAGGAGGAACAGTGGGTGT
GACAGGGGCGGCGAGGGCAGGAGAGGTAGAGATGGCGGCCGGTGTAGCAG
TGCATGCGTGA

protein sequence of NO04G00600.1

>NO04G00600.1-protein ID=NO04G00600.1-protein|Name=NO04G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MDNVTEKLPTALSLKKNEYDINKEVGPSSASSPPITNLKELVHESDDVDR
FLPADLEDHAVDDEHPTCMPSEMDDEDVRVAMIGNVDAGKSTLIGVLTNA
MLDDGRGSARSLILKHRHEQENGRTSAVTIELLGYRNSGEQVLPSGRTQT
NRWQEIVRSSGRTVTLIDLCGHERYLKTTIFGLTGLLPDFALLLVGSNMG
VTVMTREHISIACALSIPLAVVLTKVDIAPEPVLKQTRQTLARYLRKNNK
LPYPIKDLSQVEAAADSLASDRVTPVFAISSVTGQGLDLLRAFVSRLRRT
SPLYQGLSSAPSLSSCPDAPSIHIPIDGVYEVKGVGLVVGGTILRGHVRP
NQSLLLGPDRGGAFVPLSVRSIECRRQPVKEAKQGMSITFAVRSLNKRVT
LRRSYFRKGMVLVGAEDRPRPVRDFQASVVILHHATTMAKGYEPVLHMGT
VRQAAEMTEILGGEDALRTGSRAEVLFHFRYFAEFLVVGSTFLFREGRAK
GIGKVSKLLYPSAQPPPPAAAAAATTAIAAAGTGIGSSASSTSTSSSSPA
GVSAAGAAGAAGGTVGVTGAARAGEVEMAAGVAVHA*

mRNA from alignment at chr4:208759..210705-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G00600.1 ID=NO04G00600.1|Name=NO04G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp|location=Sequence derived from alignment at chr4:208759..210705- (Nannochloropsis oceanica)
ATGGATAACGTCACGGAAAAGCTGCCGACCGCCCTCAGCCTCAAAAAAAA
CGAATACGATATCAATAAGGAAGTAGGCCCGTCCTCTGCCTCCTCTCCTC
CTATAACCAATCTAAAGGAGCTTGTGCACGAGAGCGACGATGTTGACCGC
TTTCTCCCCGCGGATCTTGAAGATCATGCTGTTGATGATGAACATCCCAC
CTGCATGCCTTCGGAGATGGATGACGAGGATGTTCGTGTGGCAATGGTAA
GTAAACCCTTTTTGTCATGTGTCATTCCAGATGTCGCGCTTTTTTTTCTC
CAGTACCTTCGTGGACAGTATCACTTCCCGCAAAATCACAAGTGAATCTG
TAAATGATAAACATGATAAACAGGCATATAATCTTAGCGCTCGAATCTCG
GTACCCGACATCAATTTACAAAAAAACTACAGATTGGGAACGTGGACGCC
GGCAAGTCTACCCTCATCGGTGTGCTCACCAACGCCATGCTTGACGACGG
CCGCGGCTCCGCCCGTTCCCTCATCCTCAAGCACCGTCATGAGCAAGAGA
ATGGCCGCACATCCGCCGTCACCATCGAACTCCTGGGCTACCGTAACTCA
GGCGAACAAGTCCTCCCTTCCGGCCGCACCCAAACTAACCGCTGGCAAGA
AATCGTGCGATCCTCAGGACGGACCGTCACCCTCATTGACCTCTGCGGCC
ACGAACGCTATTTGAAAACAACCATCTTTGGACTCACAGGCTTGCTGCCC
GACTTTGCGTTGCTGCTGGTAGGGAGCAACATGGGTGTCACCGTCATGAC
CCGGGAGCACATCTCCATTGCCTGCGCCCTCTCCATCCCCCTCGCCGTGG
TGCTCACCAAAGTCGACATTGCTCCGGAACCTGTCCTGAAGCAAACCCGT
CAAACCCTTGCCCGATACCTCCGCAAGAACAACAAGCTCCCGTACCCTAT
CAAGGACCTTTCGCAGGTAGAGGCGGCGGCGGACTCCCTCGCCTCGGATC
GCGTCACTCCCGTCTTTGCCATCTCCAGCGTCACCGGCCAAGGGTTGGAT
CTTCTCCGAGCCTTTGTGTCGCGCTTGCGTCGCACCTCCCCACTCTACCA
AGGCCTTTCCTCCGCCCCTTCACTCTCGTCCTGCCCTGATGCGCCCTCCA
TTCATATCCCTATCGACGGGGTCTACGAAGTGAAAGGCGTGGGGTTGGTA
GTGGGAGGAACGATCTTGCGGGGACATGTGCGACCGAACCAAAGCCTTCT
CCTGGGCCCTGATCGAGGTGGGGCGTTCGTTCCTCTGTCTGTGCGCAGCA
TTGAATGTCGACGACAGCCGGTCAAGGAAGCGAAGCAAGGGATGAGCATC
ACGTTTGCCGTGCGGTCTCTCAATAAACGAGTAACCTTGAGAAGGTCTTA
CTTCAGAAAGGGAATGGTACTGGTCGGAGCGGAGGACAGACCGAGGCCAG
TGAGGGATTTTCAGGCGTCCGTGGTAATTTTGCACCATGCCACGACGATG
GCGAAGGGGTATGAACCTGTGCTACACATGGGAACCGTCAGACAAGCGGC
GGAAATGACGGAGATATTAGGCGGGGAAGATGCGCTGCGGACGGGAAGTC
GGGCGGAGGTGTTGTTTCATTTCAGGTATTTTGCCGAGTTCTTGGTCGTC
GGATCCACGTTTTTGTTTCGAGAAGGCCGGGCGAAGGGCATCGGCAAAGT
CTCCAAGTTGCTTTATCCGTCAGCCCAACCACCACCACCAGCAGCAGCAG
CAGCAGCAACAACAGCAATAGCGGCAGCGGGCACCGGGATAGGGTCGTCT
GCCTCTTCGACGTCGACCTCGTCCTCATCGCCAGCAGGAGTGTCAGCTGC
AGGAGCAGCAGGAGCAGCAGGAGGAACAGTGGGTGTGACAGGGGCGGCGA
GGGCAGGAGAGGTAGAGATGGCGGCCGGTGTAGCAGTGCATGCGTGA

Coding sequence (CDS) from alignment at chr4:208759..210705-

>NO04G00600.1 ID=NO04G00600.1|Name=NO04G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1761bp|location=Sequence derived from alignment at chr4:208759..210705- (Nannochloropsis oceanica)
ATGGATAACGTCACGGAAAAGCTGCCGACCGCCCTCAGCCTCAAAAAAAA
CGAATACGATATCAATAAGGAAGTAGGCCCGTCCTCTGCCTCCTCTCCTC
CTATAACCAATCTAAAGGAGCTTGTGCACGAGAGCGACGATGTTGACCGC
TTTCTCCCCGCGGATCTTGAAGATCATGCTGTTGATGATGAACATCCCAC
CTGCATGCCTTCGGAGATGGATGACGAGGATGTTCGTGTGGCAATGATTG
GGAACGTGGACGCCGGCAAGTCTACCCTCATCGGTGTGCTCACCAACGCC
ATGCTTGACGACGGCCGCGGCTCCGCCCGTTCCCTCATCCTCAAGCACCG
TCATGAGCAAGAGAATGGCCGCACATCCGCCGTCACCATCGAACTCCTGG
GCTACCGTAACTCAGGCGAACAAGTCCTCCCTTCCGGCCGCACCCAAACT
AACCGCTGGCAAGAAATCGTGCGATCCTCAGGACGGACCGTCACCCTCAT
TGACCTCTGCGGCCACGAACGCTATTTGAAAACAACCATCTTTGGACTCA
CAGGCTTGCTGCCCGACTTTGCGTTGCTGCTGGTAGGGAGCAACATGGGT
GTCACCGTCATGACCCGGGAGCACATCTCCATTGCCTGCGCCCTCTCCAT
CCCCCTCGCCGTGGTGCTCACCAAAGTCGACATTGCTCCGGAACCTGTCC
TGAAGCAAACCCGTCAAACCCTTGCCCGATACCTCCGCAAGAACAACAAG
CTCCCGTACCCTATCAAGGACCTTTCGCAGGTAGAGGCGGCGGCGGACTC
CCTCGCCTCGGATCGCGTCACTCCCGTCTTTGCCATCTCCAGCGTCACCG
GCCAAGGGTTGGATCTTCTCCGAGCCTTTGTGTCGCGCTTGCGTCGCACC
TCCCCACTCTACCAAGGCCTTTCCTCCGCCCCTTCACTCTCGTCCTGCCC
TGATGCGCCCTCCATTCATATCCCTATCGACGGGGTCTACGAAGTGAAAG
GCGTGGGGTTGGTAGTGGGAGGAACGATCTTGCGGGGACATGTGCGACCG
AACCAAAGCCTTCTCCTGGGCCCTGATCGAGGTGGGGCGTTCGTTCCTCT
GTCTGTGCGCAGCATTGAATGTCGACGACAGCCGGTCAAGGAAGCGAAGC
AAGGGATGAGCATCACGTTTGCCGTGCGGTCTCTCAATAAACGAGTAACC
TTGAGAAGGTCTTACTTCAGAAAGGGAATGGTACTGGTCGGAGCGGAGGA
CAGACCGAGGCCAGTGAGGGATTTTCAGGCGTCCGTGGTAATTTTGCACC
ATGCCACGACGATGGCGAAGGGGTATGAACCTGTGCTACACATGGGAACC
GTCAGACAAGCGGCGGAAATGACGGAGATATTAGGCGGGGAAGATGCGCT
GCGGACGGGAAGTCGGGCGGAGGTGTTGTTTCATTTCAGGTATTTTGCCG
AGTTCTTGGTCGTCGGATCCACGTTTTTGTTTCGAGAAGGCCGGGCGAAG
GGCATCGGCAAAGTCTCCAAGTTGCTTTATCCGTCAGCCCAACCACCACC
ACCAGCAGCAGCAGCAGCAGCAACAACAGCAATAGCGGCAGCGGGCACCG
GGATAGGGTCGTCTGCCTCTTCGACGTCGACCTCGTCCTCATCGCCAGCA
GGAGTGTCAGCTGCAGGAGCAGCAGGAGCAGCAGGAGGAACAGTGGGTGT
GACAGGGGCGGCGAGGGCAGGAGAGGTAGAGATGGCGGCCGGTGTAGCAG
TGCATGCGTGA

Synonyms

Publications