NO04G00530.3, NO04G00530.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00530.3
Unique NameNO04G00530.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1975
Alignment locationchr4:193586..195649 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:193586..195649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00530.3 vs.
Match: EWM28499.1 (72 kda inositol polyphosphate 5-phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 377.5 bits (968), Expect = 5.000e-101
Identity = 233/352 (66.19%), Postives = 268/352 (76.14%), Query Frame = 0 
Query:   40 PLHVCEVPCGVGNIIHNKGGQAALFRVGPHTSFLFINAHLAAHAHRVEDRNADVDRVMTELQNLLWYHLESNKKKKKTLPFSSSPLPSSPIQYQHHHPPAPSALLDKVDRLFFLGDLNYRLELQREDIEVPLRRVKNSKITVQEAVSRLLEYDQLMIERLEKKRVFQGLVEKEVCFLPTFKFNKGRDLYDTSPKKRAPAWTDRVLFKPCEGKVKCEKYESVGGARHSDHRPVVGVFTVQLE--EEEVLKKGGKKEEVPTYGKEDEGKGSDMEMGGNWKIERKVSSSLSMAEEEEGEE-EED--EEEDEEGEEEKEEAGLIEEEE-DEEYDDDSEYGSDDEEEEEEDDDDSDF 386
            PLHVCEVPCGVGN++HNKGGQA LFRV  HTSFLFINAHLAAHAHRVEDRN DVDRVMTE+Q+LL + L   + ++      S PL SS  + Q H PP PSAL+ KVDRLFFLGDLNYRLEL REDIEVPLRRVKN+K++++EAV+RLLEYDQL IERLEK+RVF+G+VE  V FLPTFKFNKGRD YDTSPKKRAPAWTDR+LFK CEG+V+CEKY+SVGGARHSDHRPVVGVF V LE  E  V   GG++      GKE + + S    G     E+ + +      EEEGEE EED  EE  EE EEE+EE  + EEEE ++E DDDS Y S+D   EEEDD DSDF
Sbjct:  110 PLHVCEVPCGVGNLLHNKGGQAVLFRVATHTSFLFINAHLAAHAHRVEDRNGDVDRVMTEVQSLLAFSLPGREGRRARASKESIPLSSSFPERQPHQPP-PSALVKKVDRLFFLGDLNYRLELPREDIEVPLRRVKNAKVSLEEAVARLLEYDQLSIERLEKRRVFEGMVESPVHFLPTFKFNKGRDRYDTSPKKRAPAWTDRILFKACEGRVRCEKYDSVGGARHSDHRPVVGVFVVPLEGGEGAVGSAGGRE------GKETKAQNSPPGHG-----EKVIPNEGGEEREEEGEEGEEDLVEELVEEEEEEEEEEKVGEEEEGEDESDDDSGYESED---EEEDDTDSDF 446
The following BLAST results are available for this feature:
BLAST of NO04G00530.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28499.15.000e-10166.1972 kda inositol polyphosphate 5-phosphatase [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00530NO04G00530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00530.3NO04G00530.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00530.3.cds1NO04G00530.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00530.3 ID=NO04G00530.3|Name=NO04G00530.3|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp
ACAGGGCCAGGGCGACGACGTGAACGGGCCAATGTTGTATCCCTGACAAT
CCTGCTCCTACAGTCTGCGTCCGTTTCCCTGCACTTTCCCACCTTTAAGC
TTAGCCTCCCCACTATCATCATGCGGACGTCCGTCCTTATCCTTACTCCT
CGTCGTCGCACGGCCTTGGCCCTTCCTTTCCACAAGCTACTGGTCATTGT
CCTCGTCTTTGTGCTAGGTTTGACTACTCCCAGCGTCTGCGCGAGCGGGA
GTACCCCATGGGGGGCGTCGTCGGTCCGAACGGTGCCTGTAGTGGGCCGC
AGTAAGTGGCCGTGGATGGGTTAGTAGAGGGCGAGACCACATTCATTTCG
CATTCATTTTTCTTGTCATGCGAGTGAAGGCTTAGTTCTAGAAGGAAGGA
TTGATCCCGCGTACAAACTATTACCTGTCCTCTATCATACAACACAAATG
CACACAGCAGGACGCCGTGGCCAGGGCCGACGAATGGAGGACCGCAAAAA
CCTGCCACCGCCACCCACCACTTTAAACATCAGTATCGTCACTTGGAACA
TGGCCGAAAGGTCCCCCCATTATCAGACGTCTCTCTCGTCGCTAGCGCTG
CCCAACTTAATACCTCCGACCTCTGTATTCTCGGCGTGCAAGAAATCGAA
AATTTGAAGCCGAGGCGACACGAAGGTTCCCGCTCCCGGGAATGGCGACG
GCTCATCCTTCATTCCCTGGGACGGACCCACACCCTCCTCTCGCTCACCA
AGTTAGGAGGGATGCAGTTGGCAGTGCTGGCCAAAAAAGCTCTGCTTCCC
CACCTCTCCCCCTACATGTGTGCGAAGTTCCGTGTGGTGTGGGGAACATC
ATTCACAACAAAGGAGGACAAGCCGCCCTGTTCCGCGTGGGTCCCCACAC
TTCCTTCCTCTTTATCAATGCCCATCTCGCGGCCCATGCCCATCGAGTCG
AAGACCGCAACGCAGACGTCGACCGCGTCATGACCGAGCTTCAGAACCTC
CTTTGGTACCACCTTGAGTCCAACAAGAAGAAGAAGAAGACCCTGCCCTT
CTCGTCCTCCCCCCTTCCCTCCTCCCCTATTCAGTACCAACACCACCACC
CTCCCGCTCCTTCCGCCCTCCTTGACAAGGTTGACCGCCTCTTTTTTTTG
GGCGACCTCAATTACCGTCTCGAGCTCCAACGAGAAGACATTGAAGTACC
CCTCCGCCGGGTTAAAAATTCAAAAATAACGGTCCAAGAAGCCGTTTCTC
GCCTCCTAGAATACGACCAGTTGATGATTGAAAGACTCGAAAAAAAGAGA
GTTTTTCAGGGCCTGGTGGAGAAGGAAGTCTGCTTCCTCCCGACATTTAA
GTTCAACAAGGGTAGGGATTTGTATGATACATCTCCCAAGAAACGCGCCC
CTGCTTGGACGGATCGGGTTTTGTTCAAGCCGTGTGAGGGGAAGGTGAAG
TGTGAGAAATACGAGTCTGTAGGAGGGGCACGGCACAGTGACCATCGGCC
AGTGGTCGGCGTGTTTACGGTGCAGTTGGAGGAGGAAGAGGTATTGAAGA
AGGGGGGAAAGAAGGAAGAAGTGCCGACGTATGGGAAGGAGGATGAGGGT
AAAGGGTCGGATATGGAGATGGGAGGGAACTGGAAAATAGAGAGGAAGGT
GTCGTCATCGTTGTCTATGGCCGAGGAGGAGGAGGGGGAGGAGGAGGAGG
ACGAGGAGGAGGATGAAGAGGGGGAGGAGGAGAAGGAAGAGGCGGGATTG
ATTGAAGAAGAGGAAGATGAAGAATATGACGACGACTCGGAGTACGGGAG
CGATGACGAGGAGGAGGAGGAGGAGGACGACGACGATAGTGACTTTTTTT
GAAATGAATACTGAATTTCAAAGAGAGAATATAAAGCACACACCAGCAAA
CTACCATGTGTGAGACACACATGTATCAGCAAAAACGTATTAGGAAAATA
ATTAAAACGATTCATGAAATATGGC
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protein sequence of NO04G00530.3

>NO04G00530.3-protein ID=NO04G00530.3-protein|Name=NO04G00530.3|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MATAHPSFPGTDPHPPLAHQVRRDAVGSAGQKSSASPPLPLHVCEVPCGV
GNIIHNKGGQAALFRVGPHTSFLFINAHLAAHAHRVEDRNADVDRVMTEL
QNLLWYHLESNKKKKKTLPFSSSPLPSSPIQYQHHHPPAPSALLDKVDRL
FFLGDLNYRLELQREDIEVPLRRVKNSKITVQEAVSRLLEYDQLMIERLE
KKRVFQGLVEKEVCFLPTFKFNKGRDLYDTSPKKRAPAWTDRVLFKPCEG
KVKCEKYESVGGARHSDHRPVVGVFTVQLEEEEVLKKGGKKEEVPTYGKE
DEGKGSDMEMGGNWKIERKVSSSLSMAEEEEGEEEEDEEEDEEGEEEKEE
AGLIEEEEDEEYDDDSEYGSDDEEEEEEDDDDSDFF*
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mRNA from alignment at chr4:193586..195649+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00530.3 ID=NO04G00530.3|Name=NO04G00530.3|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp|location=Sequence derived from alignment at chr4:193586..195649+ (Nannochloropsis oceanica)
ACAGGGCCAGGGCGACGACGTGAACGGGCCAATGTTGTATCCCTGACAAT
CCTGCTCCTACAGTCTGCGTCCGTTTCCCTGCACTTTCCCACCTTTAAGC
TTAGCCTCCCCACTATCATCATGCGGACGTCCGTCCTTATCCTTACTCCT
CGTCGTCGCACGGCCTTGGCCCTTCCTTTCCACAAGCTACTGGTCATTGT
CCTCGTCTTTGTGCTAGGTTTGACTACTCCCAGCGTCTGCGCGAGCGGGA
GTACCCCATGGGGGGCGTCGTCGGTCCGAACGGTGCCTGTAGTGGGCCGC
AGTAAGTGGCCGTGGATGGGTTAGTAGAGGGCGAGACCACATTCATTTCG
CATTCATTTTTCTTGTCATGCGAGTGAAGGCTTAGTTCTAGAAGGAAGGA
TTGATCCCGCGTACAAACTATTACCTGTCCTCTATCATACAACACAAATG
CACACAGCAGGACGCCGTGGCCAGGGCCGACGAATGGAGGACCGCAAAAA
CCTGCCACCGGTGCGCACACAAAAAAATCTTCCTTCCTCCTCGCTTTAAT
CAGCCCCCTCTTATTTCTCCCTCCTCTTTTTCACTCTGCCCCTTCCCAGC
CACCCACCACTTTAAACATCAGTATCGTCACTTGGAACATGGCCGAAAGG
TCCCCCCATTATCAGACGTCTCTCTCGTCGCTAGCGCTGCCCAACTTAAT
ACCTCCGACCTCTGTATTCTCGGCGTGCAAGAAATCGAAAATTTGAAGCC
GAGGCGACACGAAGGTTCCCGCTCCCGGGAATGGCGACGGCTCATCCTTC
ATTCCCTGGGACGGACCCACACCCTCCTCTCGCTCACCAAGTTAGGAGGG
ATGCAGTTGGCAGTGCTGGCCAAAAAAGCTCTGCTTCCCCACCTCTCCCC
CTACATGTGTGCGAAGTTCCGTGTGGTGTGGGGAACATCATTCACAACAA
AGGAGGACAAGCCGCCCTGTTCCGCGTGGGTCCCCACACTTCCTTCCTCT
TTATCAATGCCCATCTCGCGGCCCATGCCCATCGAGTCGAAGACCGCAAC
GCAGACGTCGACCGCGTCATGACCGAGCTTCAGAACCTCCTTTGGTACCA
CCTTGAGTCCAACAAGAAGAAGAAGAAGACCCTGCCCTTCTCGTCCTCCC
CCCTTCCCTCCTCCCCTATTCAGTACCAACACCACCACCCTCCCGCTCCT
TCCGCCCTCCTTGACAAGGTTGACCGCCTCTTTTTTTTGGGCGACCTCAA
TTACCGTCTCGAGCTCCAACGAGAAGACATTGAAGTACCCCTCCGCCGGG
TTAAAAATTCAAAAATAACGGTCCAAGAAGCCGTTTCTCGCCTCCTAGAA
TACGACCAGTTGATGATTGAAAGACTCGAAAAAAAGAGAGTTTTTCAGGG
CCTGGTGGAGAAGGAAGTCTGCTTCCTCCCGACATTTAAGTTCAACAAGG
GTAGGGATTTGTATGATACATCTCCCAAGAAACGCGCCCCTGCTTGGACG
GATCGGGTTTTGTTCAAGCCGTGTGAGGGGAAGGTGAAGTGTGAGAAATA
CGAGTCTGTAGGAGGGGCACGGCACAGTGACCATCGGCCAGTGGTCGGCG
TGTTTACGGTGCAGTTGGAGGAGGAAGAGGTATTGAAGAAGGGGGGAAAG
AAGGAAGAAGTGCCGACGTATGGGAAGGAGGATGAGGGTAAAGGGTCGGA
TATGGAGATGGGAGGGAACTGGAAAATAGAGAGGAAGGTGTCGTCATCGT
TGTCTATGGCCGAGGAGGAGGAGGGGGAGGAGGAGGAGGACGAGGAGGAG
GATGAAGAGGGGGAGGAGGAGAAGGAAGAGGCGGGATTGATTGAAGAAGA
GGAAGATGAAGAATATGACGACGACTCGGAGTACGGGAGCGATGACGAGG
AGGAGGAGGAGGAGGACGACGACGATAGTGACTTTTTTTGAAATGAATAC
TGAATTTCAAAGAGAGAATATAAAGCACACACCAGCAAACTACCATGTGT
GAGACACACATGTATCAGCAAAAACGTATTAGGAAAATAATTAAAACGAT
TCATGAAATATGGC
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Coding sequence (CDS) from alignment at chr4:193586..195649+

>NO04G00530.3 ID=NO04G00530.3|Name=NO04G00530.3|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at chr4:193586..195649+ (Nannochloropsis oceanica)
ATGGCGACGGCTCATCCTTCATTCCCTGGGACGGACCCACACCCTCCTCT
CGCTCACCAAGTTAGGAGGGATGCAGTTGGCAGTGCTGGCCAAAAAAGCT
CTGCTTCCCCACCTCTCCCCCTACATGTGTGCGAAGTTCCGTGTGGTGTG
GGGAACATCATTCACAACAAAGGAGGACAAGCCGCCCTGTTCCGCGTGGG
TCCCCACACTTCCTTCCTCTTTATCAATGCCCATCTCGCGGCCCATGCCC
ATCGAGTCGAAGACCGCAACGCAGACGTCGACCGCGTCATGACCGAGCTT
CAGAACCTCCTTTGGTACCACCTTGAGTCCAACAAGAAGAAGAAGAAGAC
CCTGCCCTTCTCGTCCTCCCCCCTTCCCTCCTCCCCTATTCAGTACCAAC
ACCACCACCCTCCCGCTCCTTCCGCCCTCCTTGACAAGGTTGACCGCCTC
TTTTTTTTGGGCGACCTCAATTACCGTCTCGAGCTCCAACGAGAAGACAT
TGAAGTACCCCTCCGCCGGGTTAAAAATTCAAAAATAACGGTCCAAGAAG
CCGTTTCTCGCCTCCTAGAATACGACCAGTTGATGATTGAAAGACTCGAA
AAAAAGAGAGTTTTTCAGGGCCTGGTGGAGAAGGAAGTCTGCTTCCTCCC
GACATTTAAGTTCAACAAGGGTAGGGATTTGTATGATACATCTCCCAAGA
AACGCGCCCCTGCTTGGACGGATCGGGTTTTGTTCAAGCCGTGTGAGGGG
AAGGTGAAGTGTGAGAAATACGAGTCTGTAGGAGGGGCACGGCACAGTGA
CCATCGGCCAGTGGTCGGCGTGTTTACGGTGCAGTTGGAGGAGGAAGAGG
TATTGAAGAAGGGGGGAAAGAAGGAAGAAGTGCCGACGTATGGGAAGGAG
GATGAGGGTAAAGGGTCGGATATGGAGATGGGAGGGAACTGGAAAATAGA
GAGGAAGGTGTCGTCATCGTTGTCTATGGCCGAGGAGGAGGAGGGGGAGG
AGGAGGAGGACGAGGAGGAGGATGAAGAGGGGGAGGAGGAGAAGGAAGAG
GCGGGATTGATTGAAGAAGAGGAAGATGAAGAATATGACGACGACTCGGA
GTACGGGAGCGATGACGAGGAGGAGGAGGAGGAGGACGACGACGATAGTG
ACTTTTTTTGA
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Synonyms
Publications