NO04G00480.1, NO04G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00480.1
Unique NameNO04G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1513
Alignment locationchr4:178878..181034 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:178878..181034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00480.1 vs.
Match: EWM28485.1 (hypothetical protein Naga_100058g5 [Nannochloropsis gaditana])

HSP 1 Score: 504.2 bits (1297), Expect = 3.200e-139
Identity = 259/350 (74.00%), Postives = 293/350 (83.71%), Query Frame = 0 
Query:    1 MVDSSISVRHHDPRSSAA-VMAGTFQPRHYDTLKEEFLGQHILADLAAAMGASALVAPFVSVIDKAIIQNQAGAASLESSILSSFASLLRNPLPFLRRPEVLMVWSVYGITYFSANVINTTSKAYTFKPELPRLLATTAANMGAGIAKDRTYARMFGTVTPRGLPASSYLFFFSRDLVTMGASFNIPEPLAEEMHTALGMPLEKAEIAAQLFCPVATQFLTTPMHLLGLDMYNRPASSWKNRYELIASSYRKTVMARIARILPAFGFGGLGNKRIRAEAHAWIKRMHQPKLKGGKEPVVVLGRGMHVDLGEGRQGGIGGGV-VPIFSPGLLPRPVLPSLLPVPAWAAGLK 349
            M+DSS SVR  DPR+ AA VM+GTFQP  ++TL++E LGQHI ADL AAMGASA+VAPFVSVIDKAIIQNQAGAASLESSI+SSF SL+R+PL FLRRPEVLMVW+VYG+TYF+AN++NTTSKAY ++ ++PRLLATT ANMGAGIAKDR YARMFGTV PRGLPASSYLFFFSRDLVTMGASFN+PEPLA EMHT LG+P   A++AAQLFCPVA QFLTTPMHLLGLD+YNRP SSW+ RY LIAS+Y+KTV ARIARILPAFGFGGLGNK+IR E  AWIKR      KG KEPVVVLGR  H     G +G +  G   P   PGLLPRPV+PS+LP+PAWA   K
Sbjct:    1 MIDSSTSVRPSDPRAVAAGVMSGTFQPHQHNTLEDELLGQHIFADLIAAMGASAMVAPFVSVIDKAIIQNQAGAASLESSIVSSFQSLVRDPLTFLRRPEVLMVWTVYGVTYFAANLVNTTSKAYDYQADVPRLLATTTANMGAGIAKDRAYARMFGTVAPRGLPASSYLFFFSRDLVTMGASFNVPEPLAHEMHTKLGVPAGAADVAAQLFCPVAMQFLTTPMHLLGLDLYNRPLSSWRQRYHLIASNYQKTVAARIARILPAFGFGGLGNKKIRQEERAWIKRRQNALHKGKKEPVVVLGRDRH----GGEEGLVRQGPDRPTLMPGLLPRPVVPSMLPLPAWAVNTK 346
The following BLAST results are available for this feature:
BLAST of NO04G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28485.13.200e-13974.00hypothetical protein Naga_100058g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00480NO04G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00480.1NO04G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00480.1.cds1NO04G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00480.1.cds2NO04G00480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00480.1.cds3NO04G00480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00480.1 ID=NO04G00480.1|Name=NO04G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1513bp
CGTGGTTGAGGACCTGAATATCCCGGTTGGCCACACATCTCCAAAGCTAA
CATAAATGTCATCCTACTTGCCATACAACGAGGTGATCTCGTTTGATTTC
TTGACCTTCGATTTCGGCATAACAAGTGAAGGGGAAGCGAAAATGAAGCC
GGCACTCAACTCCTAAAAAATGTCGAGGTCGCGTTGTTCCCCCGCCGGCT
TCTGCCTCCTAAAGCCCACGCATTGATCTACGCACAGCACTGCTCACACA
ACGCGCTTCTTTAATTCCTCTTTCAAACAGGGGGAAACAATCGTTTGCCG
TCCTTGGCTGGGGCAGGGTAGCCAGGGCCGGGAGTGCGGGCAGAGGCTGC
CGGCGGGGCGACTTTTCGGAGCAGCACGAGAACAGCGCGGCCTGATTTCG
ACTCAGCAGTCTTCTCGCTTGAGAAAAGAGAGAATGGTGGACAGTTCAAT
ATCGGTGCGGCACCATGACCCCAGGTCTTCCGCTGCAGTCATGGCAGGTA
CCTTCCAGCCTCGACACTACGACACGCTGAAAGAGGAATTTCTAGGCCAA
CACATCCTGGCAGACTTGGCTGCTGCCATGGGAGCATCGGCGTTGGTCGC
CCCTTTTGTTAGCGTCATCGACAAAGCCATCATCCAAAACCAAGCCGGTG
CTGCCTCGCTTGAATCCTCCATCCTCTCTTCATTTGCCTCCCTCCTCCGC
AATCCCCTCCCCTTTCTCCGCCGCCCCGAGGTCCTTATGGTCTGGTCCGT
CTATGGTATCACCTACTTTTCAGCCAACGTCATCAACACCACCAGCAAGG
CCTACACCTTCAAACCCGAACTCCCTCGGCTCCTCGCCACCACTGCCGCC
AACATGGGTGCTGGCATTGCCAAAGACAGGACGTACGCAAGAATGTTTGG
GACCGTCACTCCTCGCGGGCTCCCTGCCTCTTCCTACCTCTTCTTCTTTT
CGAGGGATTTGGTGACAATGGGCGCGTCGTTTAATATTCCTGAGCCTTTG
GCCGAGGAGATGCACACTGCCTTGGGCATGCCCTTGGAGAAGGCGGAGAT
AGCGGCGCAGCTTTTTTGTCCCGTGGCCACGCAGTTCCTGACCACGCCAA
TGCACCTGCTTGGCCTCGACATGTATAACCGCCCTGCATCCTCCTGGAAG
AATCGCTACGAGCTGATTGCGTCGAGCTACAGGAAAACGGTGATGGCGCG
GATAGCGAGGATTTTGCCTGCGTTTGGATTCGGCGGGTTGGGAAACAAGA
GGATTAGGGCTGAGGCACATGCATGGATTAAAAGAATGCATCAGCCGAAG
CTGAAGGGGGGGAAGGAGCCGGTGGTGGTGTTGGGGAGGGGGATGCATGT
GGATCTAGGGGAGGGGAGACAGGGAGGGATAGGGGGGGGTGTAGTGCCGA
TTTTTTCGCCGGGTTTGCTTCCACGGCCGGTCTTGCCGTCCTTGTTGCCC
GTGCCGGCGTGGGCGGCGGGCCTTAAATAGAAGCCCACGGAGGTAGAGAA
CGAGGGAGGGAGG
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protein sequence of NO04G00480.1

>NO04G00480.1-protein ID=NO04G00480.1-protein|Name=NO04G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MVDSSISVRHHDPRSSAAVMAGTFQPRHYDTLKEEFLGQHILADLAAAMG
ASALVAPFVSVIDKAIIQNQAGAASLESSILSSFASLLRNPLPFLRRPEV
LMVWSVYGITYFSANVINTTSKAYTFKPELPRLLATTAANMGAGIAKDRT
YARMFGTVTPRGLPASSYLFFFSRDLVTMGASFNIPEPLAEEMHTALGMP
LEKAEIAAQLFCPVATQFLTTPMHLLGLDMYNRPASSWKNRYELIASSYR
KTVMARIARILPAFGFGGLGNKRIRAEAHAWIKRMHQPKLKGGKEPVVVL
GRGMHVDLGEGRQGGIGGGVVPIFSPGLLPRPVLPSLLPVPAWAAGLK*
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mRNA from alignment at chr4:178878..181034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00480.1 ID=NO04G00480.1|Name=NO04G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp|location=Sequence derived from alignment at chr4:178878..181034+ (Nannochloropsis oceanica)
CGTGGTTGAGGACCTGAATATCCCGGTTGGCCACACATCTCCAAAGCTAA
CATAAATGTCATCCTACTTGCCATACAACGAGGTGATCTCGTTTGATTTC
TTGACCTTCGATTTCGGCATAACAAGTGAAGGGGAAGCGAAAATGAAGCC
GGCACTCAACTCCTAAAAAATGTCGAGGTCGCGTTGTTCCCCCGCCGGCT
TCTGCCTCCTAAAGCCCACGCATTGATCTACGCACAGCACTGCTCACACA
ACGCGCTTCTTTAATTCCTCTTTCAAACAGGGGGAAACAATCGTTTGCCG
TCCTTGGCTGGGGCAGGGTAGCCAGGGCCGGGAGTGCGGGCAGAGGCTGC
CGGCGGGGCGACTTTTCGGAGCAGCACGAGAACAGCGCGGCCTGATTTCG
ACTCAGCAGTCTTCTCGCTTGAGAAAAGGTGAGCGTACGCTAAACGCAGC
ATTAAAATATTCTTTTAACATCCTATGCCCAGCGATAGGGCGTCAAGCCG
TCTTGGTATGCGCCTCGCTGCGACCAAAAACCCGCACGTGACACCCCCAT
ACTCGCAGCGGCTCAAATATTCTCCGTGCCCATCCCCATATCGTTCGTCC
TCCTCTCACTCTTTTTCTCTGTCATTTTCCAAACTACCCGCATAGAGAGA
ATGGTGGACAGTTCAATATCGGTGCGGCACCATGACCCCAGGTCTTCCGC
TGCAGTCATGGCAGGTACCTTCCAGCCTCGACACTACGACACGCTGAAAG
AGGAATTTCTAGGCCAACACATCCTGGCAGACTTGGCTGCTGCCATGGGA
GCATCGGCGTTGGTCGCCCCTTTTGTTAGGTATGTGTGCGTCTGCTACGT
TTAATTGTGGTGGTACCTTGGATTTATAAGACCATTGGGACCACGGATCT
TCTACTCATTACCTCCATACCTCCCTCTTTCTTCATCCAGCGTCATCGAC
AAAGCCATCATCCAAAACCAAGCCGGTGCTGCCTCGCTTGAATCCTCCAT
CCTCTCTTCATTTGCCTCCCTCCTCCGCAATCCCCTCCCCTTTCTCCGCC
GCCCCGAGGTCCTTATGGTCTGGTCCGTCTATGGTATCACCTACTTTTCA
GCCAACGTCATCAACACCACCAGCAAGGCCTACACCTTCAAACCCGAACT
CCCTCGGCTCCTCGCCACCACTGCCGCCAACATGGGTGCTGGCATTGCCA
AAGACAGGACGTACGCAAGAATGTTTGGGACCGTCACTCCTCGCGGGCTC
CCTGCCTCTTCCTACCTCTTCTTCTTTTCGAGGGATTTGGTGACAATGGG
CGCGTCGTTTAATATTCCTGAGCCTTTGGCCGAGGAGATGCACACTGCCT
TGGGCATGCCCTTGGAGAAGGCGGAGATAGCGGCGCAGGTATGAGAGAGT
GGAAGGAAGAGAGGGAAATGCTGTAAGATGACCTCGCGTTTAGTTGTCTT
ATTTTAGCTGTCGTCGTGTATTCAATTTATTCCTACTCTATTGCTTCTGT
CTGCAATGGTAGTCTGTCTCCATGTTCTGTCTCCATGTAGAGGTGTGTAT
GTGGCTGAGTGTATGTGGCTGTGTGTATGTGGCCGTGAGTCTGAGGGACG
CCGCAAGATCTCACATAACTTTTATTCTTGCCCTTTACTCATCCCCCTCC
CCCTCCCTCACTTCCTCCTTCCCTCTTTCCCTCCTTCCCTCCCTCCCATC
CCAGCTTTTTTGTCCCGTGGCCACGCAGTTCCTGACCACGCCAATGCACC
TGCTTGGCCTCGACATGTATAACCGCCCTGCATCCTCCTGGAAGAATCGC
TACGAGCTGATTGCGTCGAGCTACAGGAAAACGGTGATGGCGCGGATAGC
GAGGATTTTGCCTGCGTTTGGATTCGGCGGGTTGGGAAACAAGAGGATTA
GGGCTGAGGCACATGCATGGATTAAAAGAATGCATCAGCCGAAGCTGAAG
GGGGGGAAGGAGCCGGTGGTGGTGTTGGGGAGGGGGATGCATGTGGATCT
AGGGGAGGGGAGACAGGGAGGGATAGGGGGGGGTGTAGTGCCGATTTTTT
CGCCGGGTTTGCTTCCACGGCCGGTCTTGCCGTCCTTGTTGCCCGTGCCG
GCGTGGGCGGCGGGCCTTAAATAGAAGCCCACGGAGGTAGAGAACGAGGG
AGGGAGG
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Coding sequence (CDS) from alignment at chr4:178878..181034+

>NO04G00480.1 ID=NO04G00480.1|Name=NO04G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr4:178878..181034+ (Nannochloropsis oceanica)
ATGGTGGACAGTTCAATATCGGTGCGGCACCATGACCCCAGGTCTTCCGC
TGCAGTCATGGCAGGTACCTTCCAGCCTCGACACTACGACACGCTGAAAG
AGGAATTTCTAGGCCAACACATCCTGGCAGACTTGGCTGCTGCCATGGGA
GCATCGGCGTTGGTCGCCCCTTTTGTTAGCGTCATCGACAAAGCCATCAT
CCAAAACCAAGCCGGTGCTGCCTCGCTTGAATCCTCCATCCTCTCTTCAT
TTGCCTCCCTCCTCCGCAATCCCCTCCCCTTTCTCCGCCGCCCCGAGGTC
CTTATGGTCTGGTCCGTCTATGGTATCACCTACTTTTCAGCCAACGTCAT
CAACACCACCAGCAAGGCCTACACCTTCAAACCCGAACTCCCTCGGCTCC
TCGCCACCACTGCCGCCAACATGGGTGCTGGCATTGCCAAAGACAGGACG
TACGCAAGAATGTTTGGGACCGTCACTCCTCGCGGGCTCCCTGCCTCTTC
CTACCTCTTCTTCTTTTCGAGGGATTTGGTGACAATGGGCGCGTCGTTTA
ATATTCCTGAGCCTTTGGCCGAGGAGATGCACACTGCCTTGGGCATGCCC
TTGGAGAAGGCGGAGATAGCGGCGCAGCTTTTTTGTCCCGTGGCCACGCA
GTTCCTGACCACGCCAATGCACCTGCTTGGCCTCGACATGTATAACCGCC
CTGCATCCTCCTGGAAGAATCGCTACGAGCTGATTGCGTCGAGCTACAGG
AAAACGGTGATGGCGCGGATAGCGAGGATTTTGCCTGCGTTTGGATTCGG
CGGGTTGGGAAACAAGAGGATTAGGGCTGAGGCACATGCATGGATTAAAA
GAATGCATCAGCCGAAGCTGAAGGGGGGGAAGGAGCCGGTGGTGGTGTTG
GGGAGGGGGATGCATGTGGATCTAGGGGAGGGGAGACAGGGAGGGATAGG
GGGGGGTGTAGTGCCGATTTTTTCGCCGGGTTTGCTTCCACGGCCGGTCT
TGCCGTCCTTGTTGCCCGTGCCGGCGTGGGCGGCGGGCCTTAAATAG
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Synonyms
Publications