NO04G00470.1, NO04G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00470.1
Unique NameNO04G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr4:176473..177930 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:176473..177930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO04G00470.1 vs.
Match: WP_051660882.1 (MFS transporter [Bosea sp. 117])

HSP 1 Score: 111.3 bits (277), Expect = 8.400e-21
Identity = 112/391 (28.64%), Postives = 170/391 (43.48%), Query Frame = 0
Query:    7 NANYLTPAAFYLLFAGRFIGGMIFGQFGDRYRRQVVLALCLLLIGLTTLAMGLYPFHEPGVDRPSVGWAALRFLQGVGVGGQWPGTILLALESCHNERHGALAAGISHSGVFLGLGLAAGAAYQLMGQDGGGNPMRKAFW----IAGGLVMPVAVWVYFGDNAVATFEDVQEGGGISRYSWWAMVKHNFWTFIFGWITLSIDALAQSLLIFQWPLILPHGSGPGPHGRQSLTNSPAAAAKDVHGCVAMGLLATAVMTIVSAFLRERSFSRCLLYRLGAFLTCLGLWIWFFLAAGTVRRHKPLAWLFGGYLLVLGPGLGTMQGPLAALVAEPFPSSIAYAGLGFAYHTVHSAMGAAFPSLTNWLL-VRGSSETVLILSADIRPIYLAVAVLI 393
            +A  L  + F+L F  R +G MIFG FGDR  R+  L   LLL+G++T+ +GL P +E      +V    LR LQG+GVGG+W G I +A E    ++   LAA     G  LG+ L A AA  L    G         W    +   +++ V +++  G      F+ +QE   I+R      V+  +W  I   +T  I    Q+  +     +L +G+      R  L N   AAA       A+ L  T +      +L +R   R  +Y +GAF+     + +F++    +     LA      +L+  P       P AA +AE FP S+ Y+G    Y       G   P +  WLL   G+S  +    A I  I    A+ +
Sbjct:   60 SATLLAFSTFFLGFVARPVGAMIFGHFGDRIGRKGTLVATLLLMGISTVLIGLVPTYESIGIWGAVALTVLRMLQGIGVGGEWGGAIAVATEWSKFDKRRGLAASWPQFGSPLGM-LLAVAALTLTSWAGSPEWFETIGWRIPFLISAVLIVVGLYIRLGVLETPVFQQIQEKKQIARTPVLEAVR-GYWREIV--LTCLIRTGQQAPFVLFTTFLLAYGTKNLGLERSFLFNCVLAAA-------ALSLFTTPLF----GYLSDR-IGRKRMYLIGAFMMLAFAFPYFWMLDSKIPFLVVLA------ILLSLPIHDMQYAPQAAFIAESFPPSVRYSGSSIGYQLASITSGGPAPMIAAWLLHTYGTSTAISTYIAVIAAISFTSALFL 428          
The following BLAST results are available for this feature:
BLAST of NO04G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_051660882.18.400e-2128.64MFS transporter [Bosea sp. 117][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00470NO04G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00470.1NO04G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00470.1.cds1NO04G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00470.1 ID=NO04G00470.1|Name=NO04G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGCCGGACCAAGCACGCAACGCCAATTACTTGACGCCCGCTGCCTTTTA
CTTGCTTTTTGCCGGTCGCTTCATAGGAGGGATGATTTTCGGACAATTTG
GAGACCGCTATAGGCGTCAGGTGGTTTTGGCTTTGTGTTTGCTCTTGATC
GGTCTCACCACGTTGGCCATGGGCCTGTACCCTTTTCATGAGCCGGGTGT
CGACAGGCCTTCGGTGGGCTGGGCAGCACTTCGGTTCTTGCAAGGCGTCG
GCGTAGGGGGTCAGTGGCCTGGCACAATCTTGCTCGCCCTAGAGTCGTGT
CACAACGAGAGGCATGGGGCATTAGCGGCGGGAATTTCTCATTCGGGTGT
CTTTCTGGGCCTGGGACTGGCAGCCGGTGCTGCGTATCAATTGATGGGGC
AAGATGGCGGGGGAAATCCAATGCGTAAAGCGTTCTGGATCGCAGGTGGA
TTGGTTATGCCGGTGGCCGTGTGGGTGTACTTTGGAGACAACGCGGTGGC
AACGTTCGAAGATGTACAGGAGGGGGGAGGGATCTCAAGGTACTCTTGGT
GGGCGATGGTGAAGCACAATTTTTGGACCTTCATTTTTGGATGGATAACG
CTTTCAATTGATGCCCTGGCCCAATCGCTTTTGATATTCCAGTGGCCCCT
CATTTTGCCTCATGGCAGTGGCCCAGGGCCCCATGGTCGTCAGTCACTCA
CTAATAGTCCAGCGGCAGCGGCCAAAGATGTGCATGGGTGCGTTGCCATG
GGTTTGCTCGCGACTGCCGTCATGACTATCGTAAGCGCCTTTTTGCGAGA
GCGCTCCTTCTCCCGCTGCCTTTTGTACCGTCTGGGAGCTTTCCTCACGT
GCTTGGGTTTGTGGATTTGGTTTTTCTTGGCAGCTGGAACTGTGCGACGC
CACAAGCCCCTCGCCTGGCTATTTGGAGGGTACCTCCTCGTACTTGGCCC
GGGCCTGGGCACGATGCAAGGACCCTTGGCTGCGCTGGTAGCTGAGCCCT
TCCCCTCTTCCATCGCATACGCAGGTTTAGGTTTCGCCTATCATACCGTC
CACTCTGCCATGGGTGCCGCTTTTCCTTCCTTGACCAACTGGCTTTTGGT
CCGAGGCTCGTCGGAGACCGTGCTAATATTAAGTGCTGACATCCGTCCTA
TCTATCTCGCGGTAGCCGTTTTGATTGTAACGGTCCTCTGCATGTACACG
ACGTCTTTCCTCAAGGGCAGTCAACGACGCTCTATCTTGTCACGCACTCA
AGGCTTGCGTGTCCGAGATTGTATTGGTTTGTCCACAAACCCCTCCTCTT
CCGTCTTTCGATCGACTGCGTCGGGCCATCACTCAATGCCCCTTCCCACG
ATGCAGCAGTCAGTATCACTTCCCACGATGCAACAGCTAGGACCGCTTCA
TACGATACAGCAGATAGGTAATGGATTACCGCGCCTGGAGGAAGACACAA
AGCAGTAA
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protein sequence of NO04G00470.1

>NO04G00470.1-protein ID=NO04G00470.1-protein|Name=NO04G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MPDQARNANYLTPAAFYLLFAGRFIGGMIFGQFGDRYRRQVVLALCLLLI
GLTTLAMGLYPFHEPGVDRPSVGWAALRFLQGVGVGGQWPGTILLALESC
HNERHGALAAGISHSGVFLGLGLAAGAAYQLMGQDGGGNPMRKAFWIAGG
LVMPVAVWVYFGDNAVATFEDVQEGGGISRYSWWAMVKHNFWTFIFGWIT
LSIDALAQSLLIFQWPLILPHGSGPGPHGRQSLTNSPAAAAKDVHGCVAM
GLLATAVMTIVSAFLRERSFSRCLLYRLGAFLTCLGLWIWFFLAAGTVRR
HKPLAWLFGGYLLVLGPGLGTMQGPLAALVAEPFPSSIAYAGLGFAYHTV
HSAMGAAFPSLTNWLLVRGSSETVLILSADIRPIYLAVAVLIVTVLCMYT
TSFLKGSQRRSILSRTQGLRVRDCIGLSTNPSSSVFRSTASGHHSMPLPT
MQQSVSLPTMQQLGPLHTIQQIGNGLPRLEEDTKQ*
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mRNA from alignment at chr4:176473..177930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00470.1 ID=NO04G00470.1|Name=NO04G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at chr4:176473..177930- (Nannochloropsis oceanica)
ATGCCGGACCAAGCACGCAACGCCAATTACTTGACGCCCGCTGCCTTTTA CTTGCTTTTTGCCGGTCGCTTCATAGGAGGGATGATTTTCGGACAATTTG GAGACCGCTATAGGCGTCAGGTGGTTTTGGCTTTGTGTTTGCTCTTGATC GGTCTCACCACGTTGGCCATGGGCCTGTACCCTTTTCATGAGCCGGGTGT CGACAGGCCTTCGGTGGGCTGGGCAGCACTTCGGTTCTTGCAAGGCGTCG GCGTAGGGGGTCAGTGGCCTGGCACAATCTTGCTCGCCCTAGAGTCGTGT CACAACGAGAGGCATGGGGCATTAGCGGCGGGAATTTCTCATTCGGGTGT CTTTCTGGGCCTGGGACTGGCAGCCGGTGCTGCGTATCAATTGATGGGGC AAGATGGCGGGGGAAATCCAATGCGTAAAGCGTTCTGGATCGCAGGTGGA TTGGTTATGCCGGTGGCCGTGTGGGTGTACTTTGGAGACAACGCGGTGGC AACGTTCGAAGATGTACAGGAGGGGGGAGGGATCTCAAGGTACTCTTGGT GGGCGATGGTGAAGCACAATTTTTGGACCTTCATTTTTGGATGGATAACG CTTTCAATTGATGCCCTGGCCCAATCGCTTTTGATATTCCAGTGGCCCCT CATTTTGCCTCATGGCAGTGGCCCAGGGCCCCATGGTCGTCAGTCACTCA CTAATAGTCCAGCGGCAGCGGCCAAAGATGTGCATGGGTGCGTTGCCATG GGTTTGCTCGCGACTGCCGTCATGACTATCGTAAGCGCCTTTTTGCGAGA GCGCTCCTTCTCCCGCTGCCTTTTGTACCGTCTGGGAGCTTTCCTCACGT GCTTGGGTTTGTGGATTTGGTTTTTCTTGGCAGCTGGAACTGTGCGACGC CACAAGCCCCTCGCCTGGCTATTTGGAGGGTACCTCCTCGTACTTGGCCC GGGCCTGGGCACGATGCAAGGACCCTTGGCTGCGCTGGTAGCTGAGCCCT TCCCCTCTTCCATCGCATACGCAGGTTTAGGTTTCGCCTATCATACCGTC CACTCTGCCATGGGTGCCGCTTTTCCTTCCTTGACCAACTGGCTTTTGGT CCGAGGCTCGTCGGAGACCGTGCTAATATTAAGTGCTGACATCCGTCCTA TCTATCTCGCGGTAGCCGTTTTGATTGTAACGGTCCTCTGCATGTACACG ACGTCTTTCCTCAAGGGCAGTCAACGACGCTCTATCTTGTCACGCACTCA AGGCTTGCGTGTCCGAGATTGTATTGGTTTGTCCACAAACCCCTCCTCTT CCGTCTTTCGATCGACTGCGTCGGGCCATCACTCAATGCCCCTTCCCACG ATGCAGCAGTCAGTATCACTTCCCACGATGCAACAGCTAGGACCGCTTCA TACGATACAGCAGATAGGTAATGGATTACCGCGCCTGGAGGAAGACACAA AGCAGTAA
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Coding sequence (CDS) from alignment at chr4:176473..177930-

>NO04G00470.1 ID=NO04G00470.1|Name=NO04G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr4:176473..177930- (Nannochloropsis oceanica)
ATGCCGGACCAAGCACGCAACGCCAATTACTTGACGCCCGCTGCCTTTTA
CTTGCTTTTTGCCGGTCGCTTCATAGGAGGGATGATTTTCGGACAATTTG
GAGACCGCTATAGGCGTCAGGTGGTTTTGGCTTTGTGTTTGCTCTTGATC
GGTCTCACCACGTTGGCCATGGGCCTGTACCCTTTTCATGAGCCGGGTGT
CGACAGGCCTTCGGTGGGCTGGGCAGCACTTCGGTTCTTGCAAGGCGTCG
GCGTAGGGGGTCAGTGGCCTGGCACAATCTTGCTCGCCCTAGAGTCGTGT
CACAACGAGAGGCATGGGGCATTAGCGGCGGGAATTTCTCATTCGGGTGT
CTTTCTGGGCCTGGGACTGGCAGCCGGTGCTGCGTATCAATTGATGGGGC
AAGATGGCGGGGGAAATCCAATGCGTAAAGCGTTCTGGATCGCAGGTGGA
TTGGTTATGCCGGTGGCCGTGTGGGTGTACTTTGGAGACAACGCGGTGGC
AACGTTCGAAGATGTACAGGAGGGGGGAGGGATCTCAAGGTACTCTTGGT
GGGCGATGGTGAAGCACAATTTTTGGACCTTCATTTTTGGATGGATAACG
CTTTCAATTGATGCCCTGGCCCAATCGCTTTTGATATTCCAGTGGCCCCT
CATTTTGCCTCATGGCAGTGGCCCAGGGCCCCATGGTCGTCAGTCACTCA
CTAATAGTCCAGCGGCAGCGGCCAAAGATGTGCATGGGTGCGTTGCCATG
GGTTTGCTCGCGACTGCCGTCATGACTATCGTAAGCGCCTTTTTGCGAGA
GCGCTCCTTCTCCCGCTGCCTTTTGTACCGTCTGGGAGCTTTCCTCACGT
GCTTGGGTTTGTGGATTTGGTTTTTCTTGGCAGCTGGAACTGTGCGACGC
CACAAGCCCCTCGCCTGGCTATTTGGAGGGTACCTCCTCGTACTTGGCCC
GGGCCTGGGCACGATGCAAGGACCCTTGGCTGCGCTGGTAGCTGAGCCCT
TCCCCTCTTCCATCGCATACGCAGGTTTAGGTTTCGCCTATCATACCGTC
CACTCTGCCATGGGTGCCGCTTTTCCTTCCTTGACCAACTGGCTTTTGGT
CCGAGGCTCGTCGGAGACCGTGCTAATATTAAGTGCTGACATCCGTCCTA
TCTATCTCGCGGTAGCCGTTTTGATTGTAACGGTCCTCTGCATGTACACG
ACGTCTTTCCTCAAGGGCAGTCAACGACGCTCTATCTTGTCACGCACTCA
AGGCTTGCGTGTCCGAGATTGTATTGGTTTGTCCACAAACCCCTCCTCTT
CCGTCTTTCGATCGACTGCGTCGGGCCATCACTCAATGCCCCTTCCCACG
ATGCAGCAGTCAGTATCACTTCCCACGATGCAACAGCTAGGACCGCTTCA
TACGATACAGCAGATAGGTAATGGATTACCGCGCCTGGAGGAAGACACAA
AGCAGTAA
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Synonyms
Publications