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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:176473..177930 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G00470.1 vs.
Match: WP_051660882.1 (MFS transporter [Bosea sp. 117]) HSP 1 Score: 111.3 bits (277), Expect = 8.400e-21 Identity = 112/391 (28.64%), Postives = 170/391 (43.48%), Query Frame = 0
Query: 7 NANYLTPAAFYLLFAGRFIGGMIFGQFGDRYRRQVVLALCLLLIGLTTLAMGLYPFHEPGVDRPSVGWAALRFLQGVGVGGQWPGTILLALESCHNERHGALAAGISHSGVFLGLGLAAGAAYQLMGQDGGGNPMRKAFW----IAGGLVMPVAVWVYFGDNAVATFEDVQEGGGISRYSWWAMVKHNFWTFIFGWITLSIDALAQSLLIFQWPLILPHGSGPGPHGRQSLTNSPAAAAKDVHGCVAMGLLATAVMTIVSAFLRERSFSRCLLYRLGAFLTCLGLWIWFFLAAGTVRRHKPLAWLFGGYLLVLGPGLGTMQGPLAALVAEPFPSSIAYAGLGFAYHTVHSAMGAAFPSLTNWLL-VRGSSETVLILSADIRPIYLAVAVLI 393
+A L + F+L F R +G MIFG FGDR R+ L LLL+G++T+ +GL P +E +V LR LQG+GVGG+W G I +A E ++ LAA G LG+ L A AA L G W + +++ V +++ G F+ +QE I+R V+ +W I +T I Q+ + +L +G+ R L N AAA A+ L T + +L +R R +Y +GAF+ + +F++ + LA +L+ P P AA +AE FP S+ Y+G Y G P + WLL G+S + A I I A+ +
Sbjct: 60 SATLLAFSTFFLGFVARPVGAMIFGHFGDRIGRKGTLVATLLLMGISTVLIGLVPTYESIGIWGAVALTVLRMLQGIGVGGEWGGAIAVATEWSKFDKRRGLAASWPQFGSPLGM-LLAVAALTLTSWAGSPEWFETIGWRIPFLISAVLIVVGLYIRLGVLETPVFQQIQEKKQIARTPVLEAVR-GYWREIV--LTCLIRTGQQAPFVLFTTFLLAYGTKNLGLERSFLFNCVLAAA-------ALSLFTTPLF----GYLSDR-IGRKRMYLIGAFMMLAFAFPYFWMLDSKIPFLVVLA------ILLSLPIHDMQYAPQAAFIAESFPPSVRYSGSSIGYQLASITSGGPAPMIAAWLLHTYGTSTAISTYIAVIAAISFTSALFL 428
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G00470.1 ID=NO04G00470.1|Name=NO04G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp ATGCCGGACCAAGCACGCAACGCCAATTACTTGACGCCCGCTGCCTTTTA CTTGCTTTTTGCCGGTCGCTTCATAGGAGGGATGATTTTCGGACAATTTG GAGACCGCTATAGGCGTCAGGTGGTTTTGGCTTTGTGTTTGCTCTTGATC GGTCTCACCACGTTGGCCATGGGCCTGTACCCTTTTCATGAGCCGGGTGT CGACAGGCCTTCGGTGGGCTGGGCAGCACTTCGGTTCTTGCAAGGCGTCG GCGTAGGGGGTCAGTGGCCTGGCACAATCTTGCTCGCCCTAGAGTCGTGT CACAACGAGAGGCATGGGGCATTAGCGGCGGGAATTTCTCATTCGGGTGT CTTTCTGGGCCTGGGACTGGCAGCCGGTGCTGCGTATCAATTGATGGGGC AAGATGGCGGGGGAAATCCAATGCGTAAAGCGTTCTGGATCGCAGGTGGA TTGGTTATGCCGGTGGCCGTGTGGGTGTACTTTGGAGACAACGCGGTGGC AACGTTCGAAGATGTACAGGAGGGGGGAGGGATCTCAAGGTACTCTTGGT GGGCGATGGTGAAGCACAATTTTTGGACCTTCATTTTTGGATGGATAACG CTTTCAATTGATGCCCTGGCCCAATCGCTTTTGATATTCCAGTGGCCCCT CATTTTGCCTCATGGCAGTGGCCCAGGGCCCCATGGTCGTCAGTCACTCA CTAATAGTCCAGCGGCAGCGGCCAAAGATGTGCATGGGTGCGTTGCCATG GGTTTGCTCGCGACTGCCGTCATGACTATCGTAAGCGCCTTTTTGCGAGA GCGCTCCTTCTCCCGCTGCCTTTTGTACCGTCTGGGAGCTTTCCTCACGT GCTTGGGTTTGTGGATTTGGTTTTTCTTGGCAGCTGGAACTGTGCGACGC CACAAGCCCCTCGCCTGGCTATTTGGAGGGTACCTCCTCGTACTTGGCCC GGGCCTGGGCACGATGCAAGGACCCTTGGCTGCGCTGGTAGCTGAGCCCT TCCCCTCTTCCATCGCATACGCAGGTTTAGGTTTCGCCTATCATACCGTC CACTCTGCCATGGGTGCCGCTTTTCCTTCCTTGACCAACTGGCTTTTGGT CCGAGGCTCGTCGGAGACCGTGCTAATATTAAGTGCTGACATCCGTCCTA TCTATCTCGCGGTAGCCGTTTTGATTGTAACGGTCCTCTGCATGTACACG ACGTCTTTCCTCAAGGGCAGTCAACGACGCTCTATCTTGTCACGCACTCA AGGCTTGCGTGTCCGAGATTGTATTGGTTTGTCCACAAACCCCTCCTCTT CCGTCTTTCGATCGACTGCGTCGGGCCATCACTCAATGCCCCTTCCCACG ATGCAGCAGTCAGTATCACTTCCCACGATGCAACAGCTAGGACCGCTTCA TACGATACAGCAGATAGGTAATGGATTACCGCGCCTGGAGGAAGACACAA AGCAGTAA back to topprotein sequence of NO04G00470.1 >NO04G00470.1-protein ID=NO04G00470.1-protein|Name=NO04G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp MPDQARNANYLTPAAFYLLFAGRFIGGMIFGQFGDRYRRQVVLALCLLLI GLTTLAMGLYPFHEPGVDRPSVGWAALRFLQGVGVGGQWPGTILLALESC HNERHGALAAGISHSGVFLGLGLAAGAAYQLMGQDGGGNPMRKAFWIAGG LVMPVAVWVYFGDNAVATFEDVQEGGGISRYSWWAMVKHNFWTFIFGWIT LSIDALAQSLLIFQWPLILPHGSGPGPHGRQSLTNSPAAAAKDVHGCVAM GLLATAVMTIVSAFLRERSFSRCLLYRLGAFLTCLGLWIWFFLAAGTVRR HKPLAWLFGGYLLVLGPGLGTMQGPLAALVAEPFPSSIAYAGLGFAYHTV HSAMGAAFPSLTNWLLVRGSSETVLILSADIRPIYLAVAVLIVTVLCMYT TSFLKGSQRRSILSRTQGLRVRDCIGLSTNPSSSVFRSTASGHHSMPLPT MQQSVSLPTMQQLGPLHTIQQIGNGLPRLEEDTKQ* back to topmRNA from alignment at chr4:176473..177930- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G00470.1 ID=NO04G00470.1|Name=NO04G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at chr4:176473..177930- (Nannochloropsis oceanica) ATGCCGGACCAAGCACGCAACGCCAATTACTTGACGCCCGCTGCCTTTTA
CTTGCTTTTTGCCGGTCGCTTCATAGGAGGGATGATTTTCGGACAATTTG
GAGACCGCTATAGGCGTCAGGTGGTTTTGGCTTTGTGTTTGCTCTTGATC
GGTCTCACCACGTTGGCCATGGGCCTGTACCCTTTTCATGAGCCGGGTGT
CGACAGGCCTTCGGTGGGCTGGGCAGCACTTCGGTTCTTGCAAGGCGTCG
GCGTAGGGGGTCAGTGGCCTGGCACAATCTTGCTCGCCCTAGAGTCGTGT
CACAACGAGAGGCATGGGGCATTAGCGGCGGGAATTTCTCATTCGGGTGT
CTTTCTGGGCCTGGGACTGGCAGCCGGTGCTGCGTATCAATTGATGGGGC
AAGATGGCGGGGGAAATCCAATGCGTAAAGCGTTCTGGATCGCAGGTGGA
TTGGTTATGCCGGTGGCCGTGTGGGTGTACTTTGGAGACAACGCGGTGGC
AACGTTCGAAGATGTACAGGAGGGGGGAGGGATCTCAAGGTACTCTTGGT
GGGCGATGGTGAAGCACAATTTTTGGACCTTCATTTTTGGATGGATAACG
CTTTCAATTGATGCCCTGGCCCAATCGCTTTTGATATTCCAGTGGCCCCT
CATTTTGCCTCATGGCAGTGGCCCAGGGCCCCATGGTCGTCAGTCACTCA
CTAATAGTCCAGCGGCAGCGGCCAAAGATGTGCATGGGTGCGTTGCCATG
GGTTTGCTCGCGACTGCCGTCATGACTATCGTAAGCGCCTTTTTGCGAGA
GCGCTCCTTCTCCCGCTGCCTTTTGTACCGTCTGGGAGCTTTCCTCACGT
GCTTGGGTTTGTGGATTTGGTTTTTCTTGGCAGCTGGAACTGTGCGACGC
CACAAGCCCCTCGCCTGGCTATTTGGAGGGTACCTCCTCGTACTTGGCCC
GGGCCTGGGCACGATGCAAGGACCCTTGGCTGCGCTGGTAGCTGAGCCCT
TCCCCTCTTCCATCGCATACGCAGGTTTAGGTTTCGCCTATCATACCGTC
CACTCTGCCATGGGTGCCGCTTTTCCTTCCTTGACCAACTGGCTTTTGGT
CCGAGGCTCGTCGGAGACCGTGCTAATATTAAGTGCTGACATCCGTCCTA
TCTATCTCGCGGTAGCCGTTTTGATTGTAACGGTCCTCTGCATGTACACG
ACGTCTTTCCTCAAGGGCAGTCAACGACGCTCTATCTTGTCACGCACTCA
AGGCTTGCGTGTCCGAGATTGTATTGGTTTGTCCACAAACCCCTCCTCTT
CCGTCTTTCGATCGACTGCGTCGGGCCATCACTCAATGCCCCTTCCCACG
ATGCAGCAGTCAGTATCACTTCCCACGATGCAACAGCTAGGACCGCTTCA
TACGATACAGCAGATAGGTAATGGATTACCGCGCCTGGAGGAAGACACAA
AGCAGTAA back to topCoding sequence (CDS) from alignment at chr4:176473..177930- >NO04G00470.1 ID=NO04G00470.1|Name=NO04G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr4:176473..177930- (Nannochloropsis oceanica) ATGCCGGACCAAGCACGCAACGCCAATTACTTGACGCCCGCTGCCTTTTA CTTGCTTTTTGCCGGTCGCTTCATAGGAGGGATGATTTTCGGACAATTTG GAGACCGCTATAGGCGTCAGGTGGTTTTGGCTTTGTGTTTGCTCTTGATC GGTCTCACCACGTTGGCCATGGGCCTGTACCCTTTTCATGAGCCGGGTGT CGACAGGCCTTCGGTGGGCTGGGCAGCACTTCGGTTCTTGCAAGGCGTCG GCGTAGGGGGTCAGTGGCCTGGCACAATCTTGCTCGCCCTAGAGTCGTGT CACAACGAGAGGCATGGGGCATTAGCGGCGGGAATTTCTCATTCGGGTGT CTTTCTGGGCCTGGGACTGGCAGCCGGTGCTGCGTATCAATTGATGGGGC AAGATGGCGGGGGAAATCCAATGCGTAAAGCGTTCTGGATCGCAGGTGGA TTGGTTATGCCGGTGGCCGTGTGGGTGTACTTTGGAGACAACGCGGTGGC AACGTTCGAAGATGTACAGGAGGGGGGAGGGATCTCAAGGTACTCTTGGT GGGCGATGGTGAAGCACAATTTTTGGACCTTCATTTTTGGATGGATAACG CTTTCAATTGATGCCCTGGCCCAATCGCTTTTGATATTCCAGTGGCCCCT CATTTTGCCTCATGGCAGTGGCCCAGGGCCCCATGGTCGTCAGTCACTCA CTAATAGTCCAGCGGCAGCGGCCAAAGATGTGCATGGGTGCGTTGCCATG GGTTTGCTCGCGACTGCCGTCATGACTATCGTAAGCGCCTTTTTGCGAGA GCGCTCCTTCTCCCGCTGCCTTTTGTACCGTCTGGGAGCTTTCCTCACGT GCTTGGGTTTGTGGATTTGGTTTTTCTTGGCAGCTGGAACTGTGCGACGC CACAAGCCCCTCGCCTGGCTATTTGGAGGGTACCTCCTCGTACTTGGCCC GGGCCTGGGCACGATGCAAGGACCCTTGGCTGCGCTGGTAGCTGAGCCCT TCCCCTCTTCCATCGCATACGCAGGTTTAGGTTTCGCCTATCATACCGTC CACTCTGCCATGGGTGCCGCTTTTCCTTCCTTGACCAACTGGCTTTTGGT CCGAGGCTCGTCGGAGACCGTGCTAATATTAAGTGCTGACATCCGTCCTA TCTATCTCGCGGTAGCCGTTTTGATTGTAACGGTCCTCTGCATGTACACG ACGTCTTTCCTCAAGGGCAGTCAACGACGCTCTATCTTGTCACGCACTCA AGGCTTGCGTGTCCGAGATTGTATTGGTTTGTCCACAAACCCCTCCTCTT CCGTCTTTCGATCGACTGCGTCGGGCCATCACTCAATGCCCCTTCCCACG ATGCAGCAGTCAGTATCACTTCCCACGATGCAACAGCTAGGACCGCTTCA TACGATACAGCAGATAGGTAATGGATTACCGCGCCTGGAGGAAGACACAA AGCAGTAA back to top
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