NO04G00420.1, NO04G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00420.1
Unique NameNO04G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1458
Alignment locationchr4:168382..169839 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:168382..169839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00420NO04G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00420.1NO04G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00420.1.cds1NO04G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00420.1 ID=NO04G00420.1|Name=NO04G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
ATGAACTGGTCCTCCTTTTTTTTCTTCTTCTTCTTCTTCCTAGCCGTGCT
TGCCTACACAGGTGCTGCGGTACAAACTCGCAGCGGGGCCGGGCAGCCTA
TTGTCGTAACGCCGCCAATAGCTCCAGTAGCTGTACATTCTGCACCGGCT
ACGCCTACTTTGCGTCTCCTCCCGACGCTAACCCCGGCCGGCGGCAGCGC
TTACTTAGTTGCTAATGTCCAGGACACAGGCGCTGGAGGTCCTAGCAGAG
GCGATGCCGAAGCCGCTGTGGGTGACGTGGTCCTCAAAAGAGATAACGTA
GCTATTGGTACGGCTGATAGTGTAGAGATACGACCGGGATTTGGAGCAGA
TGCTGACAGTCTCCTGCTGCAATATAATCATTCTCCCGTGGAAACCTACA
ACAGGCTGCGTGATACAAGTTATGAAGCGCTGCGATCGGTCCGAGGCATG
CTACTGTGGATTAGGAATGAGATTCAAGCTGTTATCGACCAATGTAAAAA
TATTGTGCTTGCACATCCTTTGGCATTGGACGCTACTGTTTCGGCAATCG
CGGTCATAACCGTCTATAACTATGGACCCACAATTTTGAACTTCGCCTTG
AAAGATATTCAGTGCTACGTGGATGGAAGTGAAGATTACCGCGCCGTACT
GCAAGCGGCCAATCCCCACGCTCCAATGAGTCGATATGAGGAATGGGCTG
TGTCATACCAGGGGCTTGAGGGCTGCCGCACTGGCACCCGTCCCTACCAA
GGCCGGCTACAGGAGGCGCGCCACGCGAAATTTTCTCAAGAGAGAGCAAA
GCAAGAACGCAAATACCAAGACAATTCGCATAGGCACATCCAAGCCTTGC
AATATGTCTATGAAGAGTATGAGGGCACGTGTGATGCCCCTCAGGGTGCC
GATCAGCGGCAACCGCAGGGCACTAAGGCCGGAGCGCACGATGAAGCGAG
TATTTTGAAGTCATGTGAGGATCAAGATGCAGTTTATAGGGCGTCATATA
CCAAGAAGCGAAGGCATGACAAAAATGACATCAAGCCATGGTTGGCGAAA
GAAAGCACGTATGACGAACTAAAAATTGGGGCTCTGGAGATTCATCAAAT
TCTGGACTTGGTCGTGCTTTGTGTGCCTGTTGTCATATATGTCATCTTTG
GGGATAATCAAGAGGTATTATTCGCCTTTTCGAGTCTGTCGCTTTTACTT
GGAATCATCTTTCTCTTCGGGGAGCAATCTTCTTTCTATGAAGACTTTGA
TCGACGTGCACGCGCGGGGGAGTTGGTCGAGCGAAAGGACCAAAATCAAT
TTGTGGCGCTACTGTTCATGATGGGAGTAATCAAAGACCTTGCCATTCTT
CTGGGCAGTCTTGCATTGTTCCAGATATTTGGCCATGTCTGGGTATGGGC
CACTCGTACCTATCCCACCTTGCTGTTGTGCGGTCCATCAGGAATAAGGA
GTAAGTAG
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protein sequence of NO04G00420.1

>NO04G00420.1-protein ID=NO04G00420.1-protein|Name=NO04G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MNWSSFFFFFFFFLAVLAYTGAAVQTRSGAGQPIVVTPPIAPVAVHSAPA
TPTLRLLPTLTPAGGSAYLVANVQDTGAGGPSRGDAEAAVGDVVLKRDNV
AIGTADSVEIRPGFGADADSLLLQYNHSPVETYNRLRDTSYEALRSVRGM
LLWIRNEIQAVIDQCKNIVLAHPLALDATVSAIAVITVYNYGPTILNFAL
KDIQCYVDGSEDYRAVLQAANPHAPMSRYEEWAVSYQGLEGCRTGTRPYQ
GRLQEARHAKFSQERAKQERKYQDNSHRHIQALQYVYEEYEGTCDAPQGA
DQRQPQGTKAGAHDEASILKSCEDQDAVYRASYTKKRRHDKNDIKPWLAK
ESTYDELKIGALEIHQILDLVVLCVPVVIYVIFGDNQEVLFAFSSLSLLL
GIIFLFGEQSSFYEDFDRRARAGELVERKDQNQFVALLFMMGVIKDLAIL
LGSLALFQIFGHVWVWATRTYPTLLLCGPSGIRSK*
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mRNA from alignment at chr4:168382..169839+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00420.1 ID=NO04G00420.1|Name=NO04G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at chr4:168382..169839+ (Nannochloropsis oceanica)
ATGAACTGGTCCTCCTTTTTTTTCTTCTTCTTCTTCTTCCTAGCCGTGCT TGCCTACACAGGTGCTGCGGTACAAACTCGCAGCGGGGCCGGGCAGCCTA TTGTCGTAACGCCGCCAATAGCTCCAGTAGCTGTACATTCTGCACCGGCT ACGCCTACTTTGCGTCTCCTCCCGACGCTAACCCCGGCCGGCGGCAGCGC TTACTTAGTTGCTAATGTCCAGGACACAGGCGCTGGAGGTCCTAGCAGAG GCGATGCCGAAGCCGCTGTGGGTGACGTGGTCCTCAAAAGAGATAACGTA GCTATTGGTACGGCTGATAGTGTAGAGATACGACCGGGATTTGGAGCAGA TGCTGACAGTCTCCTGCTGCAATATAATCATTCTCCCGTGGAAACCTACA ACAGGCTGCGTGATACAAGTTATGAAGCGCTGCGATCGGTCCGAGGCATG CTACTGTGGATTAGGAATGAGATTCAAGCTGTTATCGACCAATGTAAAAA TATTGTGCTTGCACATCCTTTGGCATTGGACGCTACTGTTTCGGCAATCG CGGTCATAACCGTCTATAACTATGGACCCACAATTTTGAACTTCGCCTTG AAAGATATTCAGTGCTACGTGGATGGAAGTGAAGATTACCGCGCCGTACT GCAAGCGGCCAATCCCCACGCTCCAATGAGTCGATATGAGGAATGGGCTG TGTCATACCAGGGGCTTGAGGGCTGCCGCACTGGCACCCGTCCCTACCAA GGCCGGCTACAGGAGGCGCGCCACGCGAAATTTTCTCAAGAGAGAGCAAA GCAAGAACGCAAATACCAAGACAATTCGCATAGGCACATCCAAGCCTTGC AATATGTCTATGAAGAGTATGAGGGCACGTGTGATGCCCCTCAGGGTGCC GATCAGCGGCAACCGCAGGGCACTAAGGCCGGAGCGCACGATGAAGCGAG TATTTTGAAGTCATGTGAGGATCAAGATGCAGTTTATAGGGCGTCATATA CCAAGAAGCGAAGGCATGACAAAAATGACATCAAGCCATGGTTGGCGAAA GAAAGCACGTATGACGAACTAAAAATTGGGGCTCTGGAGATTCATCAAAT TCTGGACTTGGTCGTGCTTTGTGTGCCTGTTGTCATATATGTCATCTTTG GGGATAATCAAGAGGTATTATTCGCCTTTTCGAGTCTGTCGCTTTTACTT GGAATCATCTTTCTCTTCGGGGAGCAATCTTCTTTCTATGAAGACTTTGA TCGACGTGCACGCGCGGGGGAGTTGGTCGAGCGAAAGGACCAAAATCAAT TTGTGGCGCTACTGTTCATGATGGGAGTAATCAAAGACCTTGCCATTCTT CTGGGCAGTCTTGCATTGTTCCAGATATTTGGCCATGTCTGGGTATGGGC CACTCGTACCTATCCCACCTTGCTGTTGTGCGGTCCATCAGGAATAAGGA GTAAGTAG
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Coding sequence (CDS) from alignment at chr4:168382..169839+

>NO04G00420.1 ID=NO04G00420.1|Name=NO04G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr4:168382..169839+ (Nannochloropsis oceanica)
ATGAACTGGTCCTCCTTTTTTTTCTTCTTCTTCTTCTTCCTAGCCGTGCT
TGCCTACACAGGTGCTGCGGTACAAACTCGCAGCGGGGCCGGGCAGCCTA
TTGTCGTAACGCCGCCAATAGCTCCAGTAGCTGTACATTCTGCACCGGCT
ACGCCTACTTTGCGTCTCCTCCCGACGCTAACCCCGGCCGGCGGCAGCGC
TTACTTAGTTGCTAATGTCCAGGACACAGGCGCTGGAGGTCCTAGCAGAG
GCGATGCCGAAGCCGCTGTGGGTGACGTGGTCCTCAAAAGAGATAACGTA
GCTATTGGTACGGCTGATAGTGTAGAGATACGACCGGGATTTGGAGCAGA
TGCTGACAGTCTCCTGCTGCAATATAATCATTCTCCCGTGGAAACCTACA
ACAGGCTGCGTGATACAAGTTATGAAGCGCTGCGATCGGTCCGAGGCATG
CTACTGTGGATTAGGAATGAGATTCAAGCTGTTATCGACCAATGTAAAAA
TATTGTGCTTGCACATCCTTTGGCATTGGACGCTACTGTTTCGGCAATCG
CGGTCATAACCGTCTATAACTATGGACCCACAATTTTGAACTTCGCCTTG
AAAGATATTCAGTGCTACGTGGATGGAAGTGAAGATTACCGCGCCGTACT
GCAAGCGGCCAATCCCCACGCTCCAATGAGTCGATATGAGGAATGGGCTG
TGTCATACCAGGGGCTTGAGGGCTGCCGCACTGGCACCCGTCCCTACCAA
GGCCGGCTACAGGAGGCGCGCCACGCGAAATTTTCTCAAGAGAGAGCAAA
GCAAGAACGCAAATACCAAGACAATTCGCATAGGCACATCCAAGCCTTGC
AATATGTCTATGAAGAGTATGAGGGCACGTGTGATGCCCCTCAGGGTGCC
GATCAGCGGCAACCGCAGGGCACTAAGGCCGGAGCGCACGATGAAGCGAG
TATTTTGAAGTCATGTGAGGATCAAGATGCAGTTTATAGGGCGTCATATA
CCAAGAAGCGAAGGCATGACAAAAATGACATCAAGCCATGGTTGGCGAAA
GAAAGCACGTATGACGAACTAAAAATTGGGGCTCTGGAGATTCATCAAAT
TCTGGACTTGGTCGTGCTTTGTGTGCCTGTTGTCATATATGTCATCTTTG
GGGATAATCAAGAGGTATTATTCGCCTTTTCGAGTCTGTCGCTTTTACTT
GGAATCATCTTTCTCTTCGGGGAGCAATCTTCTTTCTATGAAGACTTTGA
TCGACGTGCACGCGCGGGGGAGTTGGTCGAGCGAAAGGACCAAAATCAAT
TTGTGGCGCTACTGTTCATGATGGGAGTAATCAAAGACCTTGCCATTCTT
CTGGGCAGTCTTGCATTGTTCCAGATATTTGGCCATGTCTGGGTATGGGC
CACTCGTACCTATCCCACCTTGCTGTTGTGCGGTCCATCAGGAATAAGGA
GTAAGTAG
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Synonyms
Publications