NO04G00410.1, NO04G00410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00410.1
Unique NameNO04G00410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1118
Alignment locationchr4:165970..167649 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:165970..167649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G00410.1 vs.
Match: EWM28449.1 (aspartyl asparaginyl beta-hydroxylase [Nannochloropsis gaditana])

HSP 1 Score: 407.1 bits (1045), Expect = 4.500e-110
Identity = 207/323 (64.09%), Postives = 243/323 (75.23%), Query Frame = 0 
Query:    6 SAAASAARRQLQATIVKSGLLKTNAGVVPRPSPSLFYFPGITSKPVHAASNFHWARVLEEEHATIKKEYLNLRASKIQSDYTQQDGEHSLHQGKWDWHSYVLKGQVQAPFAEHCPETSRLLQEFHKQAFLMLGTPFSFSFFSTLHAQSVIAPHSGPSNLRLRCHLPIIVP----------------------KRKGKTGGKADGSQ-------TSSASTPGGASSPPSSSPP-----MDEYDSLEEIQATVPCGIRIGDQVRAWEEGECLVFDDAYEHEVWNRTEEERVLLLVDFWHPEIDREERVAIQGMFDYAAKQGWMKG 295
            SA AS    +LQATI++SG+LKTNAGV+PRPSPSLFYFPGITSKPVH A+  HWARVLEEE+ATIK+EY+ L++ +I SDY +QDGEHSLH G+WDWHSY+LKGQ+Q  FAE CPETSRLLQEF++Q+FLM  TPFSFSFFSTLH QSVIAPH+GPSNLRLRCHLP+IVP                      +R+G+ GG  +G +         SA+    + S P   PP       E+DSL  +QA +PCGIRIGDQVR W EG+CLVFDDAYEHEVWN TEEERVLLLVDFWHPEI  EER AIQ MF++AA+QGWM+G
Sbjct:    9 SAIASGFANKLQATIIRSGMLKTNAGVLPRPSPSLFYFPGITSKPVHDATQLHWARVLEEEYATIKQEYMGLKSRQIDSDYKRQDGEHSLHHGRWDWHSYILKGQIQPLFAELCPETSRLLQEFNRQSFLMRDTPFSFSFFSTLHGQSVIAPHTGPSNLRLRCHLPLIVPQGGKTEANEEKKEGMKEGRREGRREGEKGGSEEGRERGNQGEGLQSAAGKDSSQSRPDPVPPGCASSSAEFDSLATLQARLPCGIRIGDQVREWVEGKCLVFDDAYEHEVWNLTEEERVLLLVDFWHPEIALEEREAIQKMFEFAARQGWMQG 331
The following BLAST results are available for this feature:
BLAST of NO04G00410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28449.14.500e-11064.09aspartyl asparaginyl beta-hydroxylase [Nannochloro... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00410NO04G00410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00410.1NO04G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00410.1.cds1NO04G00410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00410.1.cds2NO04G00410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00410.1.cds3NO04G00410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00410.1.cds4NO04G00410.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00410.1 ID=NO04G00410.1|Name=NO04G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1118bp
CGCATGATGAGATCAGCAATTTCGTGAAAATGTAGGATCATACCGTTGGT
CAAATCAAGCAAGCATTGGTGAGAATGTCACACACAGTACAAACTGCACA
ACCTCGAACCTCCGTCTCCTTTCTCACAGGTGCATACAGGCAACCTCCTC
CGAGGAGTCCCTCCGCCTCTGCGCCCCTCCCTTCCTCCTTCCCAGTCCAT
GCCTGCCGCCGCCTCTGCCGCCGCTTCGGCTGCCAGAAGGCAACTGCAAG
CCACCATTGTCAAGAGCGGCTTGCTCAAGACGAATGCGGGGGTGGTGCCT
CGTCCATCTCCTTCCCTGTTTTACTTTCCGGGCATCACATCCAAGCCCGT
GCATGCCGCCAGCAACTTTCATTGGGCTCGAGTGCTGGAGGAGGAGCACG
CGACGATCAAGAAGGAGTACTTAAACCTCAGGGCGAGTAAGATTCAATCG
GACTATACGCAGCAGGATGGAGAGCACAGCTTGCACCAAGGCAAGTGGGA
CTGGCATTCTTACGTTCTCAAAGGCCAGGTCCAAGCCCCCTTTGCCGAGC
ATTGCCCCGAGACCAGCCGCCTCCTCCAAGAATTTCATAAGCAAGCCTTC
TTGATGCTCGGGACGCCCTTCTCCTTCTCCTTCTTCTCCACTCTGCATGC
CCAGAGTGTGATTGCCCCTCATTCGGGTCCTTCCAACCTGAGGCTGCGGT
GCCATTTGCCCATCATCGTGCCCAAGAGAAAGGGGAAGACGGGAGGGAAG
GCGGATGGGTCTCAAACATCTTCTGCTTCAACCCCTGGCGGGGCTTCCTC
CCCCCCTTCCTCCTCCCCTCCTATGGACGAATACGACTCCCTGGAGGAGA
TTCAAGCCACTGTCCCCTGTGGCATTCGTATAGGTGACCAAGTTCGGGCG
TGGGAGGAGGGGGAATGCTTGGTCTTTGACGACGCCTACGAGCACGAGGT
CTGGAATCGGACGGAGGAAGAACGAGTATTGCTGCTGGTGGACTTCTGGC
ATCCCGAAATCGACCGCGAGGAGCGGGTAGCGATCCAGGGAATGTTTGAT
TATGCGGCCAAGCAGGGTTGGATGAAAGGAGGATGAGAAAGGAAGGGAGG
GAGGGAGGGAGGGAGTGA
back to top

protein sequence of NO04G00410.1

>NO04G00410.1-protein ID=NO04G00410.1-protein|Name=NO04G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MPAAASAAASAARRQLQATIVKSGLLKTNAGVVPRPSPSLFYFPGITSKP
VHAASNFHWARVLEEEHATIKKEYLNLRASKIQSDYTQQDGEHSLHQGKW
DWHSYVLKGQVQAPFAEHCPETSRLLQEFHKQAFLMLGTPFSFSFFSTLH
AQSVIAPHSGPSNLRLRCHLPIIVPKRKGKTGGKADGSQTSSASTPGGAS
SPPSSSPPMDEYDSLEEIQATVPCGIRIGDQVRAWEEGECLVFDDAYEHE
VWNRTEEERVLLLVDFWHPEIDREERVAIQGMFDYAAKQGWMKGG*
back to top

mRNA from alignment at chr4:165970..167649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00410.1 ID=NO04G00410.1|Name=NO04G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp|location=Sequence derived from alignment at chr4:165970..167649- (Nannochloropsis oceanica)
CGCATGATGAGATCAGCAATTTCGTGAAAATGTAGGATCATACCGTTGGT
CAAATCAAGCAAGCATTGGTGAGAATGTCACACACAGTACAAACTGCACA
ACCTCGAACCTCCGTCTCCTTTCTCACAGGTGCATACAGGCAACCTCCTC
CGAGGAGTCCCTCCGCCTCTGCGCCCCTCCCTTCCTCCTTCCCAGTCCAT
GCCTGCCGCCGCCTCTGCCGCCGCTTCGGCTGCCAGAAGGCAACTGCAAG
CCACCATTGTCAAGAGCGGCTTGCTCAAGACGAATGCGGGGGTGGTGCCT
CGTCCATCTCCTTCCCTGTTTTACTTTCCGGGCATCACATCCAAGCCCGT
GCATGCCGCCAGCAACTTTCATTGGGCTCGAGTGTACGTATGCGGAGAGT
ATTGGGAGCAGGCAAGGGGAGGTGTTGGGATGCTAGAGTACGACAAATAT
AATTTTGGACTTTTAAAAGCAGGCATGACGTTCTTGTCTGATCGTGTGTC
TCTGCCCCCCTTGTTTTTTGGTCCCACGCAGGCTGGAGGAGGAGCACGCG
ACGATCAAGAAGGAGTACTTAAACCTCAGGGCGAGTAAGATTCAATCGGA
CTATACGCAGCAGGATGGAGAGCACAGCTTGCACCAAGGTCAGTGTGGGG
AACGGGAGGGAGTTGTAGGTACCGCGGGAGAGGGGGAGGGAGGGATGGAG
GCGCATAAGGCTTGACTAGCCATAAGAAATGTTTCTGTGTCGTATAACGA
ATTCCTCCTTCCTCTGTCTTGTGCCTTTTCCTCCCTATTCCTATCAGGCA
AGTGGGACTGGCATTCTTACGTTCTCAAAGGCCAGGTCCAAGCCCCCTTT
GCCGAGCATTGCCCCGAGACCAGCCGCCTCCTCCAAGAATTTCATAAGCA
AGCCTTCTTGATGCTCGGGACGCCCTTCTCCTTCTCCTTCTTCTCCACTC
TGCATGCCCAGAGTGTGATTGCCCCTCATTCGGGTCCTTCCAACCTGAGG
CTGCGGTGCCATTTGCCCATCATCGTGCCCAAGAGAAAGGGGAAGACGGG
AGGGAAGGCGGATGGGTCTCAAACATCTTCTGCTTCAACCCCTGGCGGGG
CTTCCTCCCCCCCTTCCTCCTCCCCTCCTATGGACGAATACGACTCCCTG
GAGGAGATTCAAGCCACTGTCCCCTGTGGCATTCGTATAGGTGACCAAGT
TCGGGCGTGGGAGGAGGGGGAATGCTTGGTCTTTGACGACGCCTACGAGC
ACGAGGTCTGGAATCGGACGGAGGAAGAACGAGTATTGCTGCTGGTGGAC
TTCTGGCATGTAAGCTAGGATGTGATGAAGAGTTGTATGTGTTTAATTTG
TTTTATCATGTGTGTGGTGCCATTGCCTTGTTCTTCTTGTTGTTCTTACA
TGTCTTTGCTCGTTCTGCTTGCTTTCCTCTCTGTCCTCTGTCCTGTGGGT
CGGCAGCGAGGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGACC
GACGCAGGAAGCCACTCGTTTTACACCTATGCTCACTACCACCACTCGTT
TCATATTTCAACAGCCCGAAATCGACCGCGAGGAGCGGGTAGCGATCCAG
GGAATGTTTGATTATGCGGCCAAGCAGGGTTGGATGAAAGGAGGATGAGA
AAGGAAGGGAGGGAGGGAGGGAGGGAGTGA
back to top

Coding sequence (CDS) from alignment at chr4:165970..167649-

>NO04G00410.1 ID=NO04G00410.1|Name=NO04G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at chr4:165970..167649- (Nannochloropsis oceanica)
ATGCCTGCCGCCGCCTCTGCCGCCGCTTCGGCTGCCAGAAGGCAACTGCA
AGCCACCATTGTCAAGAGCGGCTTGCTCAAGACGAATGCGGGGGTGGTGC
CTCGTCCATCTCCTTCCCTGTTTTACTTTCCGGGCATCACATCCAAGCCC
GTGCATGCCGCCAGCAACTTTCATTGGGCTCGAGTGCTGGAGGAGGAGCA
CGCGACGATCAAGAAGGAGTACTTAAACCTCAGGGCGAGTAAGATTCAAT
CGGACTATACGCAGCAGGATGGAGAGCACAGCTTGCACCAAGGCAAGTGG
GACTGGCATTCTTACGTTCTCAAAGGCCAGGTCCAAGCCCCCTTTGCCGA
GCATTGCCCCGAGACCAGCCGCCTCCTCCAAGAATTTCATAAGCAAGCCT
TCTTGATGCTCGGGACGCCCTTCTCCTTCTCCTTCTTCTCCACTCTGCAT
GCCCAGAGTGTGATTGCCCCTCATTCGGGTCCTTCCAACCTGAGGCTGCG
GTGCCATTTGCCCATCATCGTGCCCAAGAGAAAGGGGAAGACGGGAGGGA
AGGCGGATGGGTCTCAAACATCTTCTGCTTCAACCCCTGGCGGGGCTTCC
TCCCCCCCTTCCTCCTCCCCTCCTATGGACGAATACGACTCCCTGGAGGA
GATTCAAGCCACTGTCCCCTGTGGCATTCGTATAGGTGACCAAGTTCGGG
CGTGGGAGGAGGGGGAATGCTTGGTCTTTGACGACGCCTACGAGCACGAG
GTCTGGAATCGGACGGAGGAAGAACGAGTATTGCTGCTGGTGGACTTCTG
GCATCCCGAAATCGACCGCGAGGAGCGGGTAGCGATCCAGGGAATGTTTG
ATTATGCGGCCAAGCAGGGTTGGATGAAAGGAGGATGA
back to top
Synonyms
Publications