NO04G00330.1, NO04G00330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00330.1
Unique NameNO04G00330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2786
Alignment locationchr4:139663..142651 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:139663..142651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00330.1 vs.
Match: EWM28439.1 (golgi snap receptor complex member 2 [Nannochloropsis gaditana])

HSP 1 Score: 334.7 bits (857), Expect = 2.100e-88
Identity = 171/212 (80.66%), Postives = 192/212 (90.57%), Query Frame = 0 
Query:    1 MTSVAELLPKTKKLAFELQSQVRQVELGYVSPDNVFMGLSELERQIGILNTLVGQERPGAREQWRRKISELGNEAMFLRTVLDRFLQSRGRIVQEAKEREDLLARRYGKGQDGETPTIFMDQLMEEGASYQRSGVMMNDILMSGQATLSNLLDQRSSLKSARKKVLDILSLLGMSSRIMGMAERRDAVDKVIVGGGMCLTLVVLWVCWKAVS 213
            MTSVAELLPKTKKLAFELQ QVRQVE+GYVSPDNVFMGL ELERQI IL+TLV QERPGAREQW+R+I EL +EA+FLRTVL+RFLQSRG++ QEAKERE+LLARRYGKG D E P   +++L+EEGASYQRS  MMNDILMSGQATLSNLLDQRSSLKSARKKVLD+L+LLG+S RI GMAERRD VDK+IV GGM +TL+VLW+CWKAVS
Sbjct:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCWKAVS 212
The following BLAST results are available for this feature:
BLAST of NO04G00330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28439.12.100e-8880.66golgi snap receptor complex member 2 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00330NO04G00330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00330.1NO04G00330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00330.1.cds1NO04G00330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00330.1.cds2NO04G00330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00330.1 ID=NO04G00330.1|Name=NO04G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2786bp
CCCTCCCCCTCCTCCCTCCAACCCTTCCCGAAGAAGCCTCAATCCTCGGG
TGAGGGCCAGGGCGTCCGAGTTCAATAAACGAGGACATAAAGTCACTACA
GATGCCAATTCCTCCTTCCCCCCCTCCGTCCCTCCCTCCTCCTCCTCCTC
CTCCGCCTCCTCCTTCCCTTCCTCCGCCCTTTTCTCCATCCTCCGGGTAG
CTTGTAGCAGAGTTTGGAGGCGGGAATGGACGCTCTCGAGGGGGAGGGAG
AGGAGGTAAGGGGAGGCGATAAGGAGCTTGGCCTGGTTGATATTCGGGAG
GTAGGCGTGGAGGAGGGATTTGACCTCGAGATAGTGCTGGGATTGTGGGC
AAGAAGAGAGGGGGGTTAGGGAAGAGGATGTCGCTGCTGGTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCGGTCGTACCTCTCGCCACACGTGGGTC
CGATCCGGTGGAGGGGGAGGGAGGGAAGGAAGAGAAAAGGAGGGTAGGAA
CGGTGCTCAAGACCTTGATGCCCGCCGTGGGGGATAGATCAAAGTGCGCT
TCAAGGAGACCTAAAGCAGAGGTGACCGAGGATGTGGCTTCGGCCTGGGT
CTGGAGGAGGAGGGGGATGGCTCTGCGACAAACACGTGCGGCGTCTGCGC
CGGGTAGGAGGGCTTGCCAGGTGGTGAGTCGGGCTTGGACCTCGGGTGAG
GTGAGGTAGAGGAGGGGAGCAGCACGAGTAGCCAGGAAGCGGGGGGGGAG
GTCGTAGAGGGTTTTGTGGATGAAGGCCACGCGGCGGCTTATCTCGGCGG
GGGGAAGGAGGAGGAGTGGGGGGAAGCGGGAGACAAGCTCATTAACAGAC
ACGTCAGGCAAGGCGCGGGTGAGGGCGGCGAGGGATGGTTGGAGGACAGT
GCGCGGGTACCGCAGTTGGGGATGCTCCTCGGCGGCACGAATGAGATAGC
GGATGCGCTCTTTGGAGAGGCCTCTTTCGTCTTTCCAAAAGAGGGCGAGG
GCCTCGGGAGATAGCTCCTCTTCCTCTTCTATTTGGACGACTTCTGTGTC
TTCGGAGTGGGTAGCGTCTTGTGGTGCGTCCTTGGCAAAGAGAGGGGCTA
GGAGTGGTGGTGATCTTCTTGGTCTCCGATTATACGAGGCGTGCATGTCT
TGGGATCTTGGTTCGGAGGCGCTGGAGGACGGAGGGCATGGGGTTGATAA
GGAGGATGAAGAGGAGGGGGTGGAGGAGGAGGAAAAGGGCAAGCTTTTCG
AAAAAGCCGGGGATGCTGATGCTGTGGGGTTATGAGGCGAGGGCAAGAAC
AAAGCCCTCATTCGCCCTCCTCTACTGCCCATGCTGCTGCTGCTGCTGAC
CAAGATGACGATGAGGAGGGCGAGCAGCAGGAGGTAGCAGCCGAGGGTTG
ATGCTGGCGCTCTCATCCTCAACATCACTCTGGCGGGCCTTTGCCTTAAA
AGACGGCGCTGGAGCTTCAATAGGCCACGGTCGTCGACGACGTCATCTCT
TTGGCCACTGTGTACGCGCGTGGTGAAGGGAGGCATGGTGAATGTGCCGG
GGCCTTAGATTAGAATTGCCTCCAACGGAGTGAAGCAAACAGCAAGCGAG
TTAATGCCTTGCTTCTTTGCCCTGGGTCTCCTTGCATGCCTAGATGGTCT
AGCTTACCTCACGCGACACACAACATATCATCACCACAGGCACAAACACA
CGCGCAGGAAGCAACCTACCAAGCCCAAAATCCCCCCGGCTTTTTGAAGC
CATTATCAAAATCATCACCTCTCTCTCCCTCCATCCTTGCCGGCCCACTG
CTACTGCCACAATAACCACGCCACTACTCCCAAGAGCAACATCAGCAAGA
GAACCCCATCGCACACTTTAAAGCCCACCTTCGCTATGACATCCGTTGCA
GAGCTACTGCCTAAGACCAAGAAGCTGGCCTTTGAACTCCAAAGCCAAGT
CCGACAGGTGGAACTGGGCTATGTCTCGCCCGACAACGTATTTATGGGTC
TGAGCGAACTCGAACGGCAGATCGGCATCCTTAACACGCTTGTTGGTCAA
GAACGGCCAGGGGCGCGGGAACAGTGGAGGAGGAAAATAAGCGAGTTGGG
AAATGAGGCCATGTTCCTAAGGACGGTCTTAGATCGATTTTTGCAGTCAA
GGGGAAGGATAGTACAGGAGGCGAAGGAGAGGGAGGATTTGCTGGCGAGG
CGGTATGGGAAGGGGCAGGATGGGGAGACGCCGACGATTTTCATGGATCA
ATTGATGGAGGAAGGAGCAAGTTATCAGCGGAGTGGGGTGATGATGAATG
ACATACTCATGTCGGGGCAGGCGACGCTTTCGAACCTTCTAGATCAACGG
AGTTCCCTGAAAAGCGCGCGGAAGAAGGTGTTGGACATATTAAGCCTGCT
TGGGATGAGCAGTCGGATCATGGGGATGGCGGAGAGGAGGGATGCGGTGG
ATAAAGTGATCGTCGGGGGGGGGATGTGTCTGACGTTGGTGGTGCTATGG
GTCTGCTGGAAGGCCGTGTCATGAGACAGTCATCGGGTATAAATTGAGCC
CAAAATTAAGAATGTAAAACTAGGCTGTGAAGTGGTTGGTTGCTTTTTTT
AATGTGCCGTGTTGCTTACTCTTATCGTGGGGGGTTGTGCGGGGACGTAA
CGGCTTGGATCGTGCGGCAGGGTTGGCCGTTAGACCGCCTCGTGAAGAGG
AGGGAACGATGAGGAAGAGAGAGAGCACGGAACGCAATTTTTGCGCATGA
CTCCTTTACAAAACGAAAAAACAATAATTTTGAAAA
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protein sequence of NO04G00330.1

>NO04G00330.1-protein ID=NO04G00330.1-protein|Name=NO04G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MTSVAELLPKTKKLAFELQSQVRQVELGYVSPDNVFMGLSELERQIGILN
TLVGQERPGAREQWRRKISELGNEAMFLRTVLDRFLQSRGRIVQEAKERE
DLLARRYGKGQDGETPTIFMDQLMEEGASYQRSGVMMNDILMSGQATLSN
LLDQRSSLKSARKKVLDILSLLGMSSRIMGMAERRDAVDKVIVGGGMCLT
LVVLWVCWKAVS*
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mRNA from alignment at chr4:139663..142651+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00330.1 ID=NO04G00330.1|Name=NO04G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2989bp|location=Sequence derived from alignment at chr4:139663..142651+ (Nannochloropsis oceanica)
CCCTCCCCCTCCTCCCTCCAACCCTTCCCGAAGAAGCCTCAATCCTCGGG
TGAGGGCCAGGGCGTCCGAGTTCAATAAACGAGGACATAAAGTCACTACA
GATGCCAATTCCTCCTTCCCCCCCTCCGTCCCTCCCTCCTCCTCCTCCTC
CTCCGCCTCCTCCTTCCCTTCCTCCGCCCTTTTCTCCATCCTCCGGGTAG
CTTGTAGCAGAGTTTGGAGGCGGGAATGGACGCTCTCGAGGGGGAGGGAG
AGGAGGTAAGGGGAGGCGATAAGGAGCTTGGCCTGGTTGATATTCGGGAG
GTAGGCGTGGAGGAGGGATTTGACCTCGAGATAGTGCTGGGATTGTGGGC
AAGAAGAGAGGGGGGTTAGGGAAGAGGATGTCGCTGCTGGTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCGGTCGTACCTCTCGCCACACGTGGGTC
CGATCCGGTGGAGGGGGAGGGAGGGAAGGAAGAGAAAAGGAGGGTAGGAA
CGGTGCTCAAGACCTTGATGCCCGCCGTGGGGGATAGATCAAAGTGCGCT
TCAAGGAGACCTAAAGCAGAGGTGACCGAGGATGTGGCTTCGGCCTGGGT
CTGGAGGAGGAGGGGGATGGCTCTGCGACAAACACGTGCGGCGTCTGCGC
CGGGTAGGAGGGCTTGCCAGGTGGTGAGTCGGGCTTGGACCTCGGGTGAG
GTGAGGTAGAGGAGGGGAGCAGCACGAGTAGCCAGGAAGCGGGGGGGGAG
GTCGTAGAGGGTTTTGTGGATGAAGGCCACGCGGCGGCTTATCTCGGCGG
GGGGAAGGAGGAGGAGTGGGGGGAAGCGGGAGACAAGCTCATTAACAGAC
ACGTCAGGCAAGGCGCGGGTGAGGGCGGCGAGGGATGGTTGGAGGACAGT
GCGCGGGTACCGCAGTTGGGGATGCTCCTCGGCGGCACGAATGAGATAGC
GGATGCGCTCTTTGGAGAGGCCTCTTTCGTCTTTCCAAAAGAGGGCGAGG
GCCTCGGGAGATAGCTCCTCTTCCTCTTCTATTTGGACGACTTCTGTGTC
TTCGGAGTGGGTAGCGTCTTGTGGTGCGTCCTTGGCAAAGAGAGGGGCTA
GGAGTGGTGGTGATCTTCTTGGTCTCCGATTATACGAGGCGTGCATGTCT
TGGGATCTTGGTTCGGAGGCGCTGGAGGACGGAGGGCATGGGGTTGATAA
GGAGGATGAAGAGGAGGGGGTGGAGGAGGAGGAAAAGGGCAAGCTTTTCG
AAAAAGCCGGGGATGCTGATGCTGTGGGGTTATGAGGCGAGGGCAAGAAC
AAAGCCCTCATTCGCCCTCCTCTACTGCCCATGCTGCTGCTGCTGCTGAC
CAAGATGACGATGAGGAGGGCGAGCAGCAGGAGGTAGCAGCCGAGGGTTG
ATGCTGGCGCTCTCATCCTCAACATCACTCTGGCGGGCCTTTGCCTTAAA
AGACGGCGCTGGAGCTTCAATAGGCCACGGTCGTCGACGACGTCATCTCT
TTGGCCACTGTGTACGCGCGTGGTGAAGGGAGGCATGGTGAATGTGCCGG
GGCCTTAGATTAGAATTGCCTCCAACGGAGTGAAGCAAACAGCAAGCGAG
TTAATGCCTTGCTTCTTTGCCCTGGGTCTCCTTGCATGCCTAGATGGTCT
AGCTTACCTCACGCGACACACAACATATCATCACCACAGGCACAAACACA
CGCGCAGGAAGCAACCTACCAAGCCCAAAATCCCCCCGGCTTTTTGAAGC
CATTATCAAAATCATCACCTCTCTCTCCCTCCATCCTTGCCGGCCCACTG
CTACTGCCACAATAACCACGCCACTACTCCCAAGAGCAACATCAGCAAGA
GAACCCCATCGCACACTTTAAAGCCCACCTTCGCTATGACATCCGTTGCA
GAGCTACTGCCTAAGACCAAGAAGCTGGCCTTTGAACTCCAAAGCCAAGT
CCGACAGGTATTTTATGCGCCTTGTGCACGGCATGCCCTCTCCTTCCAGC
CCTCCTTTCCTCTGCGCCTCAGAAGGTTGACCTGCCATCCTTGCCCACTA
AATGCTTGTCTGGCTGGGATTGGCTTCAGCCTGAAGCGTCCTGTCATCCC
TAACTCGCTCCCTTCCGCCTTCTCCTAATTATCCCCCCTCCCTCCCTCTC
CCACCCACAGGTGGAACTGGGCTATGTCTCGCCCGACAACGTATTTATGG
GTCTGAGCGAACTCGAACGGCAGATCGGCATCCTTAACACGCTTGTTGGT
CAAGAACGGCCAGGGGCGCGGGAACAGTGGAGGAGGAAAATAAGCGAGTT
GGGAAATGAGGCCATGTTCCTAAGGACGGTCTTAGATCGATTTTTGCAGT
CAAGGGGAAGGATAGTACAGGAGGCGAAGGAGAGGGAGGATTTGCTGGCG
AGGCGGTATGGGAAGGGGCAGGATGGGGAGACGCCGACGATTTTCATGGA
TCAATTGATGGAGGAAGGAGCAAGTTATCAGCGGAGTGGGGTGATGATGA
ATGACATACTCATGTCGGGGCAGGCGACGCTTTCGAACCTTCTAGATCAA
CGGAGTTCCCTGAAAAGCGCGCGGAAGAAGGTGTTGGACATATTAAGCCT
GCTTGGGATGAGCAGTCGGATCATGGGGATGGCGGAGAGGAGGGATGCGG
TGGATAAAGTGATCGTCGGGGGGGGGATGTGTCTGACGTTGGTGGTGCTA
TGGGTCTGCTGGAAGGCCGTGTCATGAGACAGTCATCGGGTATAAATTGA
GCCCAAAATTAAGAATGTAAAACTAGGCTGTGAAGTGGTTGGTTGCTTTT
TTTAATGTGCCGTGTTGCTTACTCTTATCGTGGGGGGTTGTGCGGGGACG
TAACGGCTTGGATCGTGCGGCAGGGTTGGCCGTTAGACCGCCTCGTGAAG
AGGAGGGAACGATGAGGAAGAGAGAGAGCACGGAACGCAATTTTTGCGCA
TGACTCCTTTACAAAACGAAAAAACAATAATTTTGAAAA
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Coding sequence (CDS) from alignment at chr4:139663..142651+

>NO04G00330.1 ID=NO04G00330.1|Name=NO04G00330.1|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at chr4:139663..142651+ (Nannochloropsis oceanica)
ATGACATCCGTTGCAGAGCTACTGCCTAAGACCAAGAAGCTGGCCTTTGA
ACTCCAAAGCCAAGTCCGACAGGTGGAACTGGGCTATGTCTCGCCCGACA
ACGTATTTATGGGTCTGAGCGAACTCGAACGGCAGATCGGCATCCTTAAC
ACGCTTGTTGGTCAAGAACGGCCAGGGGCGCGGGAACAGTGGAGGAGGAA
AATAAGCGAGTTGGGAAATGAGGCCATGTTCCTAAGGACGGTCTTAGATC
GATTTTTGCAGTCAAGGGGAAGGATAGTACAGGAGGCGAAGGAGAGGGAG
GATTTGCTGGCGAGGCGGTATGGGAAGGGGCAGGATGGGGAGACGCCGAC
GATTTTCATGGATCAATTGATGGAGGAAGGAGCAAGTTATCAGCGGAGTG
GGGTGATGATGAATGACATACTCATGTCGGGGCAGGCGACGCTTTCGAAC
CTTCTAGATCAACGGAGTTCCCTGAAAAGCGCGCGGAAGAAGGTGTTGGA
CATATTAAGCCTGCTTGGGATGAGCAGTCGGATCATGGGGATGGCGGAGA
GGAGGGATGCGGTGGATAAAGTGATCGTCGGGGGGGGGATGTGTCTGACG
TTGGTGGTGCTATGGGTCTGCTGGAAGGCCGTGTCATGA
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Synonyms
Publications