NO04G00320.1, NO04G00320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00320.1
Unique NameNO04G00320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1752
Alignment locationchr4:139336..141087 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:139336..141087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00320.1 vs.
Match: EWM28441.1 (hypothetical protein Naga_100495g7 [Nannochloropsis gaditana])

HSP 1 Score: 255.4 bits (651), Expect = 4.400e-64
Identity = 185/416 (44.47%), Postives = 241/416 (57.93%), Query Frame = 0 
Query:   76 LSTPCPPSSSASEPRSQDMHASYNR--RPRRSPPLLAPLFAKDAPQDATHSEDTEVVQIE---EEEELSPEALALFWKDERGLSKERIRYLIRAAEEHPQLRYPRTVLQPSLAALTRALPDVSVNELVSRFPPLLLLPPAEISRRVAFIHKTLYDLPPRFLATRAAPLLYLTSPEVQARLTTWQALLPGADAARVCRRAIPLLLQTQAEATSSVTSALGLLEAHFDLSPTAGIKVLSTVPTLLFSSFPPSPSTGSDPRVARGTTAAAAAAAAAAAPAATSSSLTPLSSCPQSQHYLEVKSLLHAYLPNINQAKLLIASPYLLSLPLESVHSRLQTLLQATRRMEKRAEEGKEEAEEEEEEGGTEGGKEE------LASVVTLCPRLLNSDALALTRGLRLLREGLEGGG-GGREGG 480
            L  P PPSS+A    S      YN+      +  LL  L   ++ QD+T  E  E  +     EEE LSPEAL ++W++E+GLS +R  YL+ AA++HP LRYP TVL+PSLAA  RA PDV+V +L+SRFP LLLL PA+I  R+  +   L DLPPR LATRAAPLL L   EV ARL TWQ+L PG D AR+CRR++PLLL + + A + VT A+ LL AH +LS TA + VL+  P LL       P  G      RG                  + +  +  C  ++H   VK+LL  Y+P  + AKLL+ASP LL LPL ++  RL+ +                  EE  +EGG EGGKEE      LA ++TLCPR+L ++A A+ RG+R +R GLE GG GG EGG
Sbjct:   53 LHHPLPPSSAAI---SLPYDGRYNKVLSTDNAKVLLFGLTYVNS-QDSTALEPAEGPETGADYEEEALSPEALRIYWEEEKGLSPKRSHYLVVAAKKHPSLRYPHTVLEPSLAAFGRAFPDVAVPDLMSRFPALLLLSPAQILARLRTLQHCLPDLPPRLLATRAAPLLLLRPAEVHARLDTWQSLFPGRDTARLCRRSLPLLLLSPSCAETLVTDAMALLHAHLNLSSTAAVDVLTEAPALLV------PREGGGRGGGRGRGRGGG-----------RNDMKKVELCWDAEHLQNVKNLLEGYVPGASPAKLLLASPSLLLLPLPTLEGRLRAV------------------EEVGKEGGREGGKEEVREGEGLARLLTLCPRVLKAEAEAVRRGVRSIRAGLEAGGEGGGEGG 429
The following BLAST results are available for this feature:
BLAST of NO04G00320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28441.14.400e-6444.47hypothetical protein Naga_100495g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00320NO04G00320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00320.1NO04G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00320.1.cds1NO04G00320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00320.1 ID=NO04G00320.1|Name=NO04G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
ATGTTGAGGATGAGAGCGCCAGCATCAACCCTCGGCTGCTACCTCCTGCT
GCTCGCCCTCCTCATCGTCATCTTGGTCAGCAGCAGCAGCAGCATGGGCA
GTAGAGGAGGGCGAATGAGGGCTTTGTTCTTGCCCTCGCCTCATAACCCC
ACAGCATCAGCATCCCCGGCTTTTTCGAAAAGCTTGCCCTTTTCCTCCTC
CTCCACCCCCTCCTCTTCATCCTCCTTATCAACCCCATGCCCTCCGTCCT
CCAGCGCCTCCGAACCAAGATCCCAAGACATGCACGCCTCGTATAATCGG
AGACCAAGAAGATCACCACCACTCCTAGCCCCTCTCTTTGCCAAGGACGC
ACCACAAGACGCTACCCACTCCGAAGACACAGAAGTCGTCCAAATAGAAG
AGGAAGAGGAGCTATCTCCCGAGGCCCTCGCCCTCTTTTGGAAAGACGAA
AGAGGCCTCTCCAAAGAGCGCATCCGCTATCTCATTCGTGCCGCCGAGGA
GCATCCCCAACTGCGGTACCCGCGCACTGTCCTCCAACCATCCCTCGCCG
CCCTCACCCGCGCCTTGCCTGACGTGTCTGTTAATGAGCTTGTCTCCCGC
TTCCCCCCACTCCTCCTCCTTCCCCCCGCCGAGATAAGCCGCCGCGTGGC
CTTCATCCACAAAACCCTCTACGACCTCCCCCCCCGCTTCCTGGCTACTC
GTGCTGCTCCCCTCCTCTACCTCACCTCACCCGAGGTCCAAGCCCGACTC
ACCACCTGGCAAGCCCTCCTACCCGGCGCAGACGCCGCACGTGTTTGTCG
CAGAGCCATCCCCCTCCTCCTCCAGACCCAGGCCGAAGCCACATCCTCGG
TCACCTCTGCTTTAGGTCTCCTTGAAGCGCACTTTGATCTATCCCCCACG
GCGGGCATCAAGGTCTTGAGCACCGTTCCTACCCTCCTTTTCTCTTCCTT
CCCTCCCTCCCCCTCCACCGGATCGGACCCACGTGTGGCGAGAGGTACGA
CCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGCGACATCC
TCTTCCCTAACCCCCCTCTCTTCTTGCCCACAATCCCAGCACTATCTCGA
GGTCAAATCCCTCCTCCACGCCTACCTCCCGAATATCAACCAGGCCAAGC
TCCTTATCGCCTCCCCTTACCTCCTCTCCCTCCCCCTCGAGAGCGTCCAT
TCCCGCCTCCAAACTCTGCTACAAGCTACCCGGAGGATGGAGAAAAGGGC
GGAGGAAGGGAAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGAGGGACGG
AGGGGGGGAAGGAGGAATTGGCATCTGTAGTGACTTTATGTCCTCGTTTA
TTGAACTCGGACGCCCTGGCCCTCACCCGAGGATTGAGGCTTCTTCGGGA
AGGGTTGGAGGGAGGAGGGGGAGGGAGGGAGGGAGGAAGGGTGAACATGA
CGCAGCTGGCGTGTAAATGTCCGGCGTTGTTGCTCAAGGCCGTGGAGGGG
GTGGACCTCGCGGCCCGGGCACAGGAATGGCAAGCGGCCTTCGGGGAGGG
AGGACAGGAGGCAGGGGGGGAGGGAGGGAGGGAGGGAGGGGGGATCGACA
CGAAGGCCCTGCTCCGCAAACACCCTCTTCTCCTCCTTCCCGATTTCAAT
ACGATCCTCCAACGCTTCACCGCCTTTGAACGCGGCCTCCGAGCACCCTT
CCCTCCCCCTCCCTCCTTCCCTCCCCCTCCCTCCCCCCTCCCTTCCCTCT
AG
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protein sequence of NO04G00320.1

>NO04G00320.1-protein ID=NO04G00320.1-protein|Name=NO04G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MLRMRAPASTLGCYLLLLALLIVILVSSSSSMGSRGGRMRALFLPSPHNP
TASASPAFSKSLPFSSSSTPSSSSSLSTPCPPSSSASEPRSQDMHASYNR
RPRRSPPLLAPLFAKDAPQDATHSEDTEVVQIEEEEELSPEALALFWKDE
RGLSKERIRYLIRAAEEHPQLRYPRTVLQPSLAALTRALPDVSVNELVSR
FPPLLLLPPAEISRRVAFIHKTLYDLPPRFLATRAAPLLYLTSPEVQARL
TTWQALLPGADAARVCRRAIPLLLQTQAEATSSVTSALGLLEAHFDLSPT
AGIKVLSTVPTLLFSSFPPSPSTGSDPRVARGTTAAAAAAAAAAAPAATS
SSLTPLSSCPQSQHYLEVKSLLHAYLPNINQAKLLIASPYLLSLPLESVH
SRLQTLLQATRRMEKRAEEGKEEAEEEEEEGGTEGGKEELASVVTLCPRL
LNSDALALTRGLRLLREGLEGGGGGREGGRVNMTQLACKCPALLLKAVEG
VDLAARAQEWQAAFGEGGQEAGGEGGREGGGIDTKALLRKHPLLLLPDFN
TILQRFTAFERGLRAPFPPPPSFPPPPSPLPSL*
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mRNA from alignment at chr4:139336..141087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00320.1 ID=NO04G00320.1|Name=NO04G00320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp|location=Sequence derived from alignment at chr4:139336..141087- (Nannochloropsis oceanica)
ATGTTGAGGATGAGAGCGCCAGCATCAACCCTCGGCTGCTACCTCCTGCT
GCTCGCCCTCCTCATCGTCATCTTGGTCAGCAGCAGCAGCAGCATGGGCA
GTAGAGGAGGGCGAATGAGGGCTTTGTTCTTGCCCTCGCCTCATAACCCC
ACAGCATCAGCATCCCCGGCTTTTTCGAAAAGCTTGCCCTTTTCCTCCTC
CTCCACCCCCTCCTCTTCATCCTCCTTATCAACCCCATGCCCTCCGTCCT
CCAGCGCCTCCGAACCAAGATCCCAAGACATGCACGCCTCGTATAATCGG
AGACCAAGAAGATCACCACCACTCCTAGCCCCTCTCTTTGCCAAGGACGC
ACCACAAGACGCTACCCACTCCGAAGACACAGAAGTCGTCCAAATAGAAG
AGGAAGAGGAGCTATCTCCCGAGGCCCTCGCCCTCTTTTGGAAAGACGAA
AGAGGCCTCTCCAAAGAGCGCATCCGCTATCTCATTCGTGCCGCCGAGGA
GCATCCCCAACTGCGGTACCCGCGCACTGTCCTCCAACCATCCCTCGCCG
CCCTCACCCGCGCCTTGCCTGACGTGTCTGTTAATGAGCTTGTCTCCCGC
TTCCCCCCACTCCTCCTCCTTCCCCCCGCCGAGATAAGCCGCCGCGTGGC
CTTCATCCACAAAACCCTCTACGACCTCCCCCCCCGCTTCCTGGCTACTC
GTGCTGCTCCCCTCCTCTACCTCACCTCACCCGAGGTCCAAGCCCGACTC
ACCACCTGGCAAGCCCTCCTACCCGGCGCAGACGCCGCACGTGTTTGTCG
CAGAGCCATCCCCCTCCTCCTCCAGACCCAGGCCGAAGCCACATCCTCGG
TCACCTCTGCTTTAGGTCTCCTTGAAGCGCACTTTGATCTATCCCCCACG
GCGGGCATCAAGGTCTTGAGCACCGTTCCTACCCTCCTTTTCTCTTCCTT
CCCTCCCTCCCCCTCCACCGGATCGGACCCACGTGTGGCGAGAGGTACGA
CCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGCGACATCC
TCTTCCCTAACCCCCCTCTCTTCTTGCCCACAATCCCAGCACTATCTCGA
GGTCAAATCCCTCCTCCACGCCTACCTCCCGAATATCAACCAGGCCAAGC
TCCTTATCGCCTCCCCTTACCTCCTCTCCCTCCCCCTCGAGAGCGTCCAT
TCCCGCCTCCAAACTCTGCTACAAGCTACCCGGAGGATGGAGAAAAGGGC
GGAGGAAGGGAAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGAGGGACGG
AGGGGGGGAAGGAGGAATTGGCATCTGTAGTGACTTTATGTCCTCGTTTA
TTGAACTCGGACGCCCTGGCCCTCACCCGAGGATTGAGGCTTCTTCGGGA
AGGGTTGGAGGGAGGAGGGGGAGGGAGGGAGGGAGGAAGGGTGAACATGA
CGCAGCTGGCGTGTAAATGTCCGGCGTTGTTGCTCAAGGCCGTGGAGGGG
GTGGACCTCGCGGCCCGGGCACAGGAATGGCAAGCGGCCTTCGGGGAGGG
AGGACAGGAGGCAGGGGGGGAGGGAGGGAGGGAGGGAGGGGGGATCGACA
CGAAGGCCCTGCTCCGCAAACACCCTCTTCTCCTCCTTCCCGATTTCAAT
ACGATCCTCCAACGCTTCACCGCCTTTGAACGCGGCCTCCGAGCACCCTT
CCCTCCCCCTCCCTCCTTCCCTCCCCCTCCCTCCCCCCTCCCTTCCCTCT
AG
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Coding sequence (CDS) from alignment at chr4:139336..141087-

>NO04G00320.1 ID=NO04G00320.1|Name=NO04G00320.1|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at chr4:139336..141087- (Nannochloropsis oceanica)
ATGTTGAGGATGAGAGCGCCAGCATCAACCCTCGGCTGCTACCTCCTGCT
GCTCGCCCTCCTCATCGTCATCTTGGTCAGCAGCAGCAGCAGCATGGGCA
GTAGAGGAGGGCGAATGAGGGCTTTGTTCTTGCCCTCGCCTCATAACCCC
ACAGCATCAGCATCCCCGGCTTTTTCGAAAAGCTTGCCCTTTTCCTCCTC
CTCCACCCCCTCCTCTTCATCCTCCTTATCAACCCCATGCCCTCCGTCCT
CCAGCGCCTCCGAACCAAGATCCCAAGACATGCACGCCTCGTATAATCGG
AGACCAAGAAGATCACCACCACTCCTAGCCCCTCTCTTTGCCAAGGACGC
ACCACAAGACGCTACCCACTCCGAAGACACAGAAGTCGTCCAAATAGAAG
AGGAAGAGGAGCTATCTCCCGAGGCCCTCGCCCTCTTTTGGAAAGACGAA
AGAGGCCTCTCCAAAGAGCGCATCCGCTATCTCATTCGTGCCGCCGAGGA
GCATCCCCAACTGCGGTACCCGCGCACTGTCCTCCAACCATCCCTCGCCG
CCCTCACCCGCGCCTTGCCTGACGTGTCTGTTAATGAGCTTGTCTCCCGC
TTCCCCCCACTCCTCCTCCTTCCCCCCGCCGAGATAAGCCGCCGCGTGGC
CTTCATCCACAAAACCCTCTACGACCTCCCCCCCCGCTTCCTGGCTACTC
GTGCTGCTCCCCTCCTCTACCTCACCTCACCCGAGGTCCAAGCCCGACTC
ACCACCTGGCAAGCCCTCCTACCCGGCGCAGACGCCGCACGTGTTTGTCG
CAGAGCCATCCCCCTCCTCCTCCAGACCCAGGCCGAAGCCACATCCTCGG
TCACCTCTGCTTTAGGTCTCCTTGAAGCGCACTTTGATCTATCCCCCACG
GCGGGCATCAAGGTCTTGAGCACCGTTCCTACCCTCCTTTTCTCTTCCTT
CCCTCCCTCCCCCTCCACCGGATCGGACCCACGTGTGGCGAGAGGTACGA
CCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGCGACATCC
TCTTCCCTAACCCCCCTCTCTTCTTGCCCACAATCCCAGCACTATCTCGA
GGTCAAATCCCTCCTCCACGCCTACCTCCCGAATATCAACCAGGCCAAGC
TCCTTATCGCCTCCCCTTACCTCCTCTCCCTCCCCCTCGAGAGCGTCCAT
TCCCGCCTCCAAACTCTGCTACAAGCTACCCGGAGGATGGAGAAAAGGGC
GGAGGAAGGGAAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGGAGGGACGG
AGGGGGGGAAGGAGGAATTGGCATCTGTAGTGACTTTATGTCCTCGTTTA
TTGAACTCGGACGCCCTGGCCCTCACCCGAGGATTGAGGCTTCTTCGGGA
AGGGTTGGAGGGAGGAGGGGGAGGGAGGGAGGGAGGAAGGGTGAACATGA
CGCAGCTGGCGTGTAAATGTCCGGCGTTGTTGCTCAAGGCCGTGGAGGGG
GTGGACCTCGCGGCCCGGGCACAGGAATGGCAAGCGGCCTTCGGGGAGGG
AGGACAGGAGGCAGGGGGGGAGGGAGGGAGGGAGGGAGGGGGGATCGACA
CGAAGGCCCTGCTCCGCAAACACCCTCTTCTCCTCCTTCCCGATTTCAAT
ACGATCCTCCAACGCTTCACCGCCTTTGAACGCGGCCTCCGAGCACCCTT
CCCTCCCCCTCCCTCCTTCCCTCCCCCTCCCTCCCCCCTCCCTTCCCTCT
AG
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Synonyms
Publications