NO04G00260.1, NO04G00260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00260.1
Unique NameNO04G00260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1920
Alignment locationchr4:116765..119151 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:116765..119151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00260.1 vs.
Match: EWM28430.1 (Yippee-like protein [Nannochloropsis gaditana])

HSP 1 Score: 167.2 bits (422), Expect = 7.500e-38
Identity = 121/267 (45.32%), Postives = 153/267 (57.30%), Query Frame = 0 
Query:   22 QSHQEGDSDSDEEVEHLQEEEENDE----EEGEGPVVPWWAQQLPQAPAEEGGRSDQQ-----------QHQQQQQQQRQHESGRCEGSVTYLLRQLFFPLLRPLSAALKKAQGHAVGQQHQQQQQQQHPHHHGERSEDGSYTRQEQQQKKKNKKDEDEGRMVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYDKAFEPSQKYKEGKFVLEMVHVRLEEE 274
            Q  Q+     +EE E  +EEEE D     EE E  +VPWWA Q      EEG RSD +             ++++ +    E GR  G           P +R          GH VG     +  +  P        DG+   Q Q+ +KK  K+E+  R+  L GP VY+C  CR HLATDMEVVSRAF GRGGRAFLLD VVN+S GPSE+R+LMTGLH+VSD+ CA C TV+GW+YDKA+E +QKYKEGKF+LE VH+ +EEE
Sbjct:   80 QQQQQQQQQYEEEEEEEEEEEEGDGSEEGEEEEAGMVPWWAVQQQHRNLEEG-RSDNRYGELREHEYASDEEEEEDEDEVGEEGRGGG-----------PFVR--------RTGH-VGFASVSRSHRSFPG-------DGTARTQSQRTRKKKAKEEEGWRV--LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKYDKAYEATQKYKEGKFILEKVHLVVEEE 316
The following BLAST results are available for this feature:
BLAST of NO04G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28430.17.500e-3845.32Yippee-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00260NO04G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00260.1NO04G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00260.1.cds1NO04G00260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00260.1.cds2NO04G00260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00260.1.cds3NO04G00260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00260.1.cds4NO04G00260.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00260.1 ID=NO04G00260.1|Name=NO04G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1920bp
ACTGTAGCGGGAGTGTCGCTGTTACAACAAGCGCCGCATAAGAAGTGGGA
GACGCAAAAGAGCTGAGATATGGCCACGACGGTGATGCCTTCAACGCCTT
TCTTCGTTCACCCTCCTGCTCATCCTCCTGTGCAGAGCCACCAGGAGGGC
GATAGCGATAGCGACGAAGAGGTTGAGCACTTGCAGGAGGAGGAGGAAAA
TGATGAGGAAGAGGGAGAGGGCCCGGTGGTACCTTGGTGGGCGCAGCAGC
TCCCGCAAGCTCCCGCGGAAGAAGGTGGGAGGTCAGATCAGCAGCAGCAC
CAACAGCAACAGCAGCAGCAACGGCAGCACGAAAGTGGTCGTTGCGAGGG
GTCCGTGACATACCTTCTCCGTCAGCTCTTTTTCCCGCTCCTGAGGCCTC
TGTCCGCGGCATTAAAAAAGGCGCAAGGGCATGCAGTAGGGCAACAGCAC
CAACAGCAGCAGCAGCAGCAGCACCCCCATCACCATGGAGAACGGTCGGA
AGATGGATCGTATACGAGACAAGAGCAGCAACAGAAAAAGAAGAACAAGA
AGGACGAGGACGAGGGTAGGATGGTGCACCTGGACGGGCCTTCGGTTTAT
TCCTGTTGCATGTGTCGCACGCATTTGGCCACGGATATGGAGGTGGTTTC
AAGGGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCCTCGACAAAGTCG
TCAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTTATGACGGGCCTC
CACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACACAGTGCTGGGGTG
GCAATATGACAAGGCATTTGAGCCCAGTCAGAAGTACAAGGAGGGGAAAT
TCGTCCTGGAGATGGTGCACGTGCGCTTGGAGGAGGAAGAGGAGGAAGAG
GAGGCGGAATGGTGAAAGAGGGAGGGAGGGAGAAGGGGAGGGAGAGTGTG
AATACGAAGGAGATGTGAGTAGATATCAAGGAGGTGTGAAGCAAGAGGGA
GGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGATAGTGGCGGT
GTACAGATAGACGTCATTTATGGGTTCAAACAATAGAAAGAAAATGTAGA
GAGTGCACGAGAAAAAGGAGAAGAAGCGTAAGAAAGAGAGCAGAGAAGGA
GGGGACAATTAAGAGAGGGGAAGAAGAAGACGAAAAAGACGAAGAACAAG
AAGAAGAAGGAGGAGTAGAAGAAGACAAAGAGAGAGCGAAAGAGAGAGAG
AGAGGATGATGGATATAGCTAGGGGAGAAGACGGTTTGCCATCACGCCAC
TGACAAACACTCATGGTTCGGTGAAAAACAACAAGGAGAGATAGAAATTG
ACGGCGATGTAGCAGAAGAAGGAAGGAAGCAAGTGTGTGTATATATGTGA
GGGTCATCTCGGCGGGAGTCCATGCGAGATCGTGCAAATGTCCGAGGAAA
TCGACAAAGGACAAAGAGGGGCTTGGAGCGAAGGAGGAGGGAGAGTAATA
TCAGCAGGTCTCATGTCGTGTGAGGTTTCCCACCCTCTGTTTGCATTATC
GTCGCTCTGCCTGTCGTTGCGGTTGTTGTTGTCGTCGGGGTGATGAAAAA
GAGCGAGAGAGAACGCGCATGAGCGTTGATGAAATAGTGTTGATGTATTT
CATAGTGTGGATGTAATGCGCCCATGCCCCGTGTAGAGAGGAAGGATAAG
AAGAACAGGAAGAAGACGACGACGACGACGAAGAAACAGACGAATGAGAA
GATGAAGACGACGACGACGAAGAAGAATAAGTAGAAGAAGAAGACGAAGA
AAAGAATAGAGGAAGGAAACGGGGAGTGGGATGATTGAGCAGAGGAAGAG
AAGAAATCCCGCCTTGATACAAATCCCTAAAACCAAAACACACAAAAGAT
GGAACGAATCAAAACAGCCT
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protein sequence of NO04G00260.1

>NO04G00260.1-protein ID=NO04G00260.1-protein|Name=NO04G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MATTVMPSTPFFVHPPAHPPVQSHQEGDSDSDEEVEHLQEEEENDEEEGE
GPVVPWWAQQLPQAPAEEGGRSDQQQHQQQQQQQRQHESGRCEGSVTYLL
RQLFFPLLRPLSAALKKAQGHAVGQQHQQQQQQQHPHHHGERSEDGSYTR
QEQQQKKKNKKDEDEGRMVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGR
GGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYDKAF
EPSQKYKEGKFVLEMVHVRLEEEEEEEEAEW*
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mRNA from alignment at chr4:116765..119151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00260.1 ID=NO04G00260.1|Name=NO04G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2387bp|location=Sequence derived from alignment at chr4:116765..119151- (Nannochloropsis oceanica)
ACTGTAGCGGGAGTGTCGCTGTTACAACAAGCGCCGCATAAGAAGTGGGA
GACGCAAAAGAGCTGAGATATGGCCACGACGGTGATGCCTTCAACGCCTT
TCTTCGTTCACCCTCCTGCTCATCCTCCTGTGCAGAGCCACCAGGAGGGC
GATAGCGATAGCGACGAAGAGGTTGAGCACTTGCAGGAGGAGGAGGAAAA
TGATGAGGAAGAGGGAGAGGGCCCGGTGGTACCTTGGTGGGCGCAGCAGC
TCCCGCAAGCTCCCGCGGAAGAAGGTGGGAGGTCAGATCAGCAGCAGCAC
CAACAGCAACAGCAGCAGCAACGGCAGCACGAAAGTGGTCGTTGCGAGGG
GTCCGTGACATACCTTCTCCGTCAGCTCTTTTTCCCGCTCCTGAGGCCTC
TGTCCGCGGCATTAAAAAAGGCGCAAGGGCATGCAGTAGGGCAACAGCAC
CAACAGCAGCAGCAGCAGCAGCACCCCCATCACCATGGAGAACGGTCGGA
AGATGGATCGTATACGAGACAAGAGCAGCAACAGAAAAAGAAGAACAAGA
AGGACGAGGACGAGGGTAGGATGGTGCACCTGGACGGGCCTTCGGTTTAT
TCCTGTTGCATGTGTCGCACGCATTTGGCCACGGATATGGAGGTGGTTTC
AAGGGTGAGGAAGACGGGAGGGTGGCAAGGCGGCGGGGGGGGAGGGAGGG
GGGATAGTCGAAGGGGATGAAGGGGAATGTTGGGAACACTAGATGCATGT
ATCACACACAGACATAACTCGTCCCCTCTCCCGCCTTAACACCTCACACA
TACATATATAGGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCCTCGAC
AAAGTGTGAGTACCTCCTCATCCCTCCCTCCCTCTCTTTCCCTCCCACCC
ATTTTTCCCTTTCGCCCGCCAACTACTTATGCTCGACGGCCTTGCGATTC
CCTCCCTCCCTCCCTCCCTCTCTCCCTTCCTCCCCTTCCTCACCCAGCGT
CAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTTATGACGGGCCTCC
ACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACACAGTGCTGGGGTGG
CAATATGTACGTAGGGAGAGGGAGGGAGGGAGGAAGGGGTCAGGGAGGGA
GGAATGGAAAGAAGGATGAAAGACGGAGAACAAGGGAATCTCGACGAATG
GGAGAAAGGGAGGGAGAGAGAGAGGGAACGGCATCGGACTCACGTCGTAT
TGTTTTCATTACGCATGCATGCAGGACAAGGCATTTGAGCCCAGTCAGAA
GTACAAGGAGGGGAAATTCGTCCTGGAGATGGTGCACGTGCGCTTGGAGG
AGGAAGAGGAGGAAGAGGAGGCGGAATGGTGAAAGAGGGAGGGAGGGAGA
AGGGGAGGGAGAGTGTGAATACGAAGGAGATGTGAGTAGATATCAAGGAG
GTGTGAAGCAAGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAG
GGAGGGATAGTGGCGGTGTACAGATAGACGTCATTTATGGGTTCAAACAA
TAGAAAGAAAATGTAGAGAGTGCACGAGAAAAAGGAGAAGAAGCGTAAGA
AAGAGAGCAGAGAAGGAGGGGACAATTAAGAGAGGGGAAGAAGAAGACGA
AAAAGACGAAGAACAAGAAGAAGAAGGAGGAGTAGAAGAAGACAAAGAGA
GAGCGAAAGAGAGAGAGAGAGGATGATGGATATAGCTAGGGGAGAAGACG
GTTTGCCATCACGCCACTGACAAACACTCATGGTTCGGTGAAAAACAACA
AGGAGAGATAGAAATTGACGGCGATGTAGCAGAAGAAGGAAGGAAGCAAG
TGTGTGTATATATGTGAGGGTCATCTCGGCGGGAGTCCATGCGAGATCGT
GCAAATGTCCGAGGAAATCGACAAAGGACAAAGAGGGGCTTGGAGCGAAG
GAGGAGGGAGAGTAATATCAGCAGGTCTCATGTCGTGTGAGGTTTCCCAC
CCTCTGTTTGCATTATCGTCGCTCTGCCTGTCGTTGCGGTTGTTGTTGTC
GTCGGGGTGATGAAAAAGAGCGAGAGAGAACGCGCATGAGCGTTGATGAA
ATAGTGTTGATGTATTTCATAGTGTGGATGTAATGCGCCCATGCCCCGTG
TAGAGAGGAAGGATAAGAAGAACAGGAAGAAGACGACGACGACGACGAAG
AAACAGACGAATGAGAAGATGAAGACGACGACGACGAAGAAGAATAAGTA
GAAGAAGAAGACGAAGAAAAGAATAGAGGAAGGAAACGGGGAGTGGGATG
ATTGAGCAGAGGAAGAGAAGAAATCCCGCCTTGATACAAATCCCTAAAAC
CAAAACACACAAAAGATGGAACGAATCAAAACAGCCT
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Coding sequence (CDS) from alignment at chr4:116765..119151-

>NO04G00260.1 ID=NO04G00260.1|Name=NO04G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr4:116765..119151- (Nannochloropsis oceanica)
ATGGCCACGACGGTGATGCCTTCAACGCCTTTCTTCGTTCACCCTCCTGC
TCATCCTCCTGTGCAGAGCCACCAGGAGGGCGATAGCGATAGCGACGAAG
AGGTTGAGCACTTGCAGGAGGAGGAGGAAAATGATGAGGAAGAGGGAGAG
GGCCCGGTGGTACCTTGGTGGGCGCAGCAGCTCCCGCAAGCTCCCGCGGA
AGAAGGTGGGAGGTCAGATCAGCAGCAGCACCAACAGCAACAGCAGCAGC
AACGGCAGCACGAAAGTGGTCGTTGCGAGGGGTCCGTGACATACCTTCTC
CGTCAGCTCTTTTTCCCGCTCCTGAGGCCTCTGTCCGCGGCATTAAAAAA
GGCGCAAGGGCATGCAGTAGGGCAACAGCACCAACAGCAGCAGCAGCAGC
AGCACCCCCATCACCATGGAGAACGGTCGGAAGATGGATCGTATACGAGA
CAAGAGCAGCAACAGAAAAAGAAGAACAAGAAGGACGAGGACGAGGGTAG
GATGGTGCACCTGGACGGGCCTTCGGTTTATTCCTGTTGCATGTGTCGCA
CGCATTTGGCCACGGATATGGAGGTGGTTTCAAGGGCCTTCCACGGACGG
GGTGGACGTGCCTTTCTCCTCGACAAAGTCGTCAACATATCACCTGGTCC
CTCGGAGCAGCGCATGCTTATGACGGGCCTCCACTCCGTGTCCGATTTGA
GGTGTGCCACATGTCACACAGTGCTGGGGTGGCAATATGACAAGGCATTT
GAGCCCAGTCAGAAGTACAAGGAGGGGAAATTCGTCCTGGAGATGGTGCA
CGTGCGCTTGGAGGAGGAAGAGGAGGAAGAGGAGGCGGAATGGTGA
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Synonyms
Publications