NO04G00200.1, NO04G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00200.1
Unique NameNO04G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1089
Alignment locationchr4:81646..83492 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:81646..83492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00200.1 vs.
Match: EWM28424.1 (Protein of unknown function DUF707 [Nannochloropsis gaditana])

HSP 1 Score: 515.0 bits (1325), Expect = 1.900e-142
Identity = 242/363 (66.67%), Postives = 284/363 (78.24%), Query Frame = 0 
Query:    4 TSPVAASSSTNAPPSEACPSYHATALQPPHQGRRKPGECVGPRGSVWSERGFNYYLFRDMFYPYEKGQSEFKSLVLFTAGRSAMANIDGLVRLWGLDNFDYVLMHFDDSATEWNQFDWYKHTVGITAQNQAKFWFYKRFASPWLVSGYRYIHFVDSDAGSPPDRPFNLTTYENFLSDRDLLIAQPAITKVGRSSDHKVCQVHNHTLYRTTSVVENGPFYSVSQQAYACYWEMIDSNAVSGWGPDVCWCQYLHEVCGFPLESACSIIDAFPLDHLDKKTASAHKFRGKDYWQYGFEEWASYEKRMKELLVSKFQKTAGYFKTLKEWPLEG-----GVGRMGAEEREERRRRWEEERVKEDARIL 362
            +S  + S  ++ P  E CPSY A     PH GRR+PGECVGPRGSVW ERGFNY+  RDMF+PYE+  S F+SLV+FTAGRSAM NID LVR WG ++FDYVLMH+DDS++EWN+FDWYKH V IT Q QAKFWFYKRFA+PWLV GYRY+HFVDSDAGSPP RPFNLT YENFLSD  LLIAQPAI K GRSSDH VC+ HN TLYR TSVVENGP YSVSQ+AYACYWEMID++AVSGWGPD CWCQYLHEVCG+P+ES CS+ID FP++HL+ KTAS   +RGK Y++YGF+EW  Y KRM +LL S FQ++A  F+T +  PL       GV +   + R ERR+  EE R  +DAR+L
Sbjct:   92 SSDPSHSPCSSVPLREPCPSYPAIPSSKPHLGRRRPGECVGPRGSVWDERGFNYFPNRDMFFPYEEEDSSFRSLVIFTAGRSAMENIDNLVRSWGFEHFDYVLMHYDDSSSEWNRFDWYKHAVAITGQQQAKFWFYKRFATPWLVRGYRYVHFVDSDAGSPPSRPFNLTQYENFLSDHGLLIAQPAIIKAGRSSDHDVCREHNDTLYRVTSVVENGPLYSVSQEAYACYWEMIDADAVSGWGPDACWCQYLHEVCGYPVESVCSVIDVFPIEHLNGKTASESSYRGKKYYEYGFKEWERYGKRMDKLLRSPFQRSAAQFRTFRSLPLPAERWVDGVSKPVIDVR-ERRKMQEEARRAKDARLL 453
The following BLAST results are available for this feature:
BLAST of NO04G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28424.11.900e-14266.67Protein of unknown function DUF707 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00200NO04G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00200.1NO04G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00200.1.cds1NO04G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00200.1.cds2NO04G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00200.1.cds3NO04G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00200.1.cds4NO04G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00200.1.cds5NO04G00200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00200.1 ID=NO04G00200.1|Name=NO04G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
ATGATTATCACTTCTCCTGTGGCTGCATCTTCCTCCACAAATGCTCCTCC
CTCCGAAGCCTGCCCTTCCTACCATGCCACCGCTCTGCAACCCCCGCACC
AGGGCCGTCGCAAGCCGGGGGAATGCGTTGGACCGCGTGGAAGTGTATGG
TCGGAGCGAGGTTTCAATTACTACCTGTTTCGCGACATGTTTTATCCGTA
CGAGAAGGGTCAGTCTGAATTCAAGAGCTTGGTGTTGTTCACGGCGGGCA
GGAGTGCGATGGCGAATATAGATGGGCTGGTCCGGTTGTGGGGATTGGAT
AATTTTGACTATGTGCTGATGCATTTTGATGACTCGGCGACAGAGTGGAA
TCAGTTCGACTGGTACAAGCACACTGTTGGTATCACAGCCCAGAACCAGG
CCAAGTTCTGGTTCTACAAGCGCTTCGCCTCGCCCTGGCTCGTCTCCGGC
TACAGATACATTCATTTTGTCGACTCGGACGCCGGCTCTCCCCCTGACCG
TCCCTTCAACCTGACTACATATGAAAACTTCCTGTCCGACCGCGACCTGC
TCATCGCCCAGCCGGCCATCACCAAGGTTGGGCGCTCGAGCGACCATAAG
GTGTGTCAGGTGCACAACCACACTCTTTATCGCACAACCAGCGTCGTTGA
AAACGGTCCATTCTACTCTGTCTCGCAACAGGCTTATGCGTGCTACTGGG
AAATGATCGACAGCAACGCCGTCAGTGGCTGGGGGCCGGACGTGTGCTGG
TGCCAGTACCTTCATGAGGTGTGTGGCTTCCCCCTGGAGAGCGCCTGTAG
CATCATCGACGCATTTCCCTTGGACCACTTGGACAAGAAGACGGCGAGCG
CCCACAAGTTCCGAGGGAAAGACTACTGGCAATACGGCTTTGAGGAATGG
GCGTCGTATGAAAAGCGGATGAAGGAGCTGCTGGTTAGTAAGTTCCAGAA
GACTGCCGGGTATTTTAAAACGCTGAAGGAATGGCCGTTAGAGGGGGGGG
TAGGGAGAATGGGCGCGGAGGAGAGAGAGGAGAGGAGGAGGAGGTGGGAG
GAGGAGAGGGTGAAAGAGGATGCGAGGATTTTGAAATGA
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protein sequence of NO04G00200.1

>NO04G00200.1-protein ID=NO04G00200.1-protein|Name=NO04G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MIITSPVAASSSTNAPPSEACPSYHATALQPPHQGRRKPGECVGPRGSVW
SERGFNYYLFRDMFYPYEKGQSEFKSLVLFTAGRSAMANIDGLVRLWGLD
NFDYVLMHFDDSATEWNQFDWYKHTVGITAQNQAKFWFYKRFASPWLVSG
YRYIHFVDSDAGSPPDRPFNLTTYENFLSDRDLLIAQPAITKVGRSSDHK
VCQVHNHTLYRTTSVVENGPFYSVSQQAYACYWEMIDSNAVSGWGPDVCW
CQYLHEVCGFPLESACSIIDAFPLDHLDKKTASAHKFRGKDYWQYGFEEW
ASYEKRMKELLVSKFQKTAGYFKTLKEWPLEGGVGRMGAEEREERRRRWE
EERVKEDARILK*
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mRNA from alignment at chr4:81646..83492+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00200.1 ID=NO04G00200.1|Name=NO04G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1847bp|location=Sequence derived from alignment at chr4:81646..83492+ (Nannochloropsis oceanica)
ATGATTATCACTTCTCCTGTGGCTGCATCTTCCTCCACAAATGCTCCTCC
CTCCGAAGCCTGCCCTTCCTACCATGCCACCGCTCTGCAACCCCCGCACC
AGGGCCGTCGCAAGCCGGGGGAATGCGTTGGACCGCGTGGAAGTGTATGG
TCGGAGCGAGGTTTCAATTACTACCTGTTTCGCGACATGTTTTATCCGTA
CGAGAAGGGTCAGTCTGAATTCAAGAGCTTGGTGTTGTTCACGGCGGGCA
GGAGTGCGATGGCGAATATAGATGGGCTGGTCCGGTTGTGGGGATTGGAT
AATTTTGACTATGTGCTGATGCATTTTGATGACTCGGCGACAGAGTGGAA
TCAGTAAGTGCGGCATTCTCTTCTCTCTCTTCTCCCTTGTGAACTGTCGT
CGGGTTGTTGCCCTTGTCCTTGCTGTGAGGAATCTTGATGGGCTGATCAG
GCTGTAGGGGTTGCTCACAGAATTGAAAGGAAACTTCGATGACCGGGTGA
CAGATGGGAATAAGTTCTGCTTCTTCCTCGACGTCATTTCATGTGTGGTG
TAGGAGGAGTGTTTATGATTCGAGTGCTGGAAATGAAAAAAAAAACATTC
TAACATTGCTCCCCCTCCCTGCCTTGCCCGCAAGGTTCGACTGGTACAAG
CACACTGTTGGTATCACAGCCCAGAACCAGGCCAAGTTCTGGTTCTACAA
GCGCTTCGCCTCGCCCTGGCTCGTCTCCGGCTACAGGTAGAGAAGTGTAG
GAGGAAAGGAGGAAAAGGCATGAGAATGATATAAAGATGCATTTTATTAT
CCACATTCTCACGAGATGGAGAAATGAATCCATTTCGTTTTGTGGATTCC
GAAACCGGCTGTTCCCCCGACCACAATCCTTTACCCGCTGCCAACGCTCT
CACATCTCCATCATTCCCTCTTCACCTCCTCTTACTCATACCCTCCTTCA
GATACATTCATTTTGTCGACTCGGACGCCGGCTCTCCCCCTGACCGTCCC
TTCAACCTGACTACATATGAAAACTTCCTGTCCGACCGCGACCTGCTCAT
CGCCCAGCCGGCCATCACCAAGGTAAAGAAGGCAAAGGAAGAAGTAGACA
GAAAATGTTTTTTTTTAAGTAGAATAGTAGAGAAAGAAAGGGCGTGTTAT
ATCACCTTAGTCATCTTTCTCTCCTTTCCCTTCCCCCCCTTCCTCCCCTT
TTTTTCTCCAGGTTGGGCGCTCGAGCGACCATAAGGTGTGTCAGGTGCAC
AACCACACTCTTTATCGCACAACCAGCGTCGTTGAAAACGGTCCATTCTA
CTCTGTCTCGCAACAGGTGAGGAGAAAATTGGAAATGTTGGAAGGAGGGA
GGGAAGGGAAGGGGGATACAATCTACATGTCAACAAGAGAAGAGAAGGTG
AAATAAGAGCACGTTCTCCCTCCCTTCTTCCCTCCTTAGGCTTATGCGTG
CTACTGGGAAATGATCGACAGCAACGCCGTCAGTGGCTGGGGGCCGGACG
TGTGCTGGTGCCAGTACCTTCATGAGGTGTGTGGCTTCCCCCTGGAGAGC
GCCTGTAGCATCATCGACGCATTTCCCTTGGACCACTTGGACAAGAAGAC
GGCGAGCGCCCACAAGTTCCGAGGGAAAGACTACTGGCAATACGGCTTTG
AGGAATGGGCGTCGTATGAAAAGCGGATGAAGGAGCTGCTGGTTAGTAAG
TTCCAGAAGACTGCCGGGTATTTTAAAACGCTGAAGGAATGGCCGTTAGA
GGGGGGGGTAGGGAGAATGGGCGCGGAGGAGAGAGAGGAGAGGAGGAGGA
GGTGGGAGGAGGAGAGGGTGAAAGAGGATGCGAGGATTTTGAAATGA
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Coding sequence (CDS) from alignment at chr4:81646..83492+

>NO04G00200.1 ID=NO04G00200.1|Name=NO04G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr4:81646..83492+ (Nannochloropsis oceanica)
ATGATTATCACTTCTCCTGTGGCTGCATCTTCCTCCACAAATGCTCCTCC
CTCCGAAGCCTGCCCTTCCTACCATGCCACCGCTCTGCAACCCCCGCACC
AGGGCCGTCGCAAGCCGGGGGAATGCGTTGGACCGCGTGGAAGTGTATGG
TCGGAGCGAGGTTTCAATTACTACCTGTTTCGCGACATGTTTTATCCGTA
CGAGAAGGGTCAGTCTGAATTCAAGAGCTTGGTGTTGTTCACGGCGGGCA
GGAGTGCGATGGCGAATATAGATGGGCTGGTCCGGTTGTGGGGATTGGAT
AATTTTGACTATGTGCTGATGCATTTTGATGACTCGGCGACAGAGTGGAA
TCAGTTCGACTGGTACAAGCACACTGTTGGTATCACAGCCCAGAACCAGG
CCAAGTTCTGGTTCTACAAGCGCTTCGCCTCGCCCTGGCTCGTCTCCGGC
TACAGATACATTCATTTTGTCGACTCGGACGCCGGCTCTCCCCCTGACCG
TCCCTTCAACCTGACTACATATGAAAACTTCCTGTCCGACCGCGACCTGC
TCATCGCCCAGCCGGCCATCACCAAGGTTGGGCGCTCGAGCGACCATAAG
GTGTGTCAGGTGCACAACCACACTCTTTATCGCACAACCAGCGTCGTTGA
AAACGGTCCATTCTACTCTGTCTCGCAACAGGCTTATGCGTGCTACTGGG
AAATGATCGACAGCAACGCCGTCAGTGGCTGGGGGCCGGACGTGTGCTGG
TGCCAGTACCTTCATGAGGTGTGTGGCTTCCCCCTGGAGAGCGCCTGTAG
CATCATCGACGCATTTCCCTTGGACCACTTGGACAAGAAGACGGCGAGCG
CCCACAAGTTCCGAGGGAAAGACTACTGGCAATACGGCTTTGAGGAATGG
GCGTCGTATGAAAAGCGGATGAAGGAGCTGCTGGTTAGTAAGTTCCAGAA
GACTGCCGGGTATTTTAAAACGCTGAAGGAATGGCCGTTAGAGGGGGGGG
TAGGGAGAATGGGCGCGGAGGAGAGAGAGGAGAGGAGGAGGAGGTGGGAG
GAGGAGAGGGTGAAAGAGGATGCGAGGATTTTGAAATGA
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Synonyms
Publications