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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:54588..56504 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G00110.2 vs.
Match: EWM28407.1 (translation initiation factor if-3 [Nannochloropsis gaditana]) HSP 1 Score: 199.1 bits (505), Expect = 1.900e-47 Identity = 144/319 (45.14%), Postives = 184/319 (57.68%), Query Frame = 0
Query: 1 MLPRVSRLAVLLPT--------AITHTTVCKKICA----VTSSRRRPRQDNPPLLPQSLSGLGGGGGRSISTTLPTAAPAPKRAGGGGGPRGKSPNNLAKESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKERRMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKVRVD---------------------RWGGGEGGEGRGGE-RTLNARRAKGRMSEGDRKIVIEKENR 286
MLP + R+ LPT ++ T I VT R RP+ PPL P ++SG G + TLP A A G G S K+ V+N+AI+A TVRLV K + + GP +S+++SR EALAKA+ GLDLVLVT AS+PWVCKL +A+RE+YQR KKE++ K + LKEISIRGNISDHDLLIKLRRV FFE G+SVR+II+PTG Q++LRP RL E+ +FIL DY +KYK V+ GGG GG +G + RT N +R RK+ I KE+R
Sbjct: 1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPL-PFAVSGASCRGAMA---TLPAGRAASTNASGSGD--NISTIIPPKKGDLVVNKAIQAGTVRLVVKND-AGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVEIKPSPGSLRREMIVHPKRNASGGGGGGGGASKGAQNRTGNQKRV--------RKVEINKESR 304
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G00110.2 ID=NO04G00110.2|Name=NO04G00110.2|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp AGATCTCTGGCTGAGCCCTGCTCAAGGACAGTGCGCTCCTCCCCGTCACA AGCATCCCCATCATCGCCTCCCCACTCTCACTCTACAATGCTGCCTCGAG TGAGCCGTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTC TGCAAAAAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGA CAACCCTCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTG GGAGGAGCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGA GCCGGTGGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTGGCTAA AGAGAGTGCCTTTGTGATCAACGAGGCCATCAAAGCGCGTACCGTCCGTC TGGTATTTAAAGAAGAAGGGTCGAGTGGGCCGCCCACCTCTACCGTTGTC TCTCGACAGGAGGCATTGGCGAAGGCGAAGGAGGTGGGGCTAGACCTGGT GTTGGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAGCTCATGAACGCCC GTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACGGATGAAGAAGAGC AGCAACACTTTGAAGGAGATCAGCATCAGGGGAAACATCTCGGACCACGA TTTGCTGATCAAACTGAGGCGTGTCGACGAGTTCTTCGAGCAAGGCCACA GCGTCCGGGTCATCATCCTTCCCACTGGCAGCCAGATGAATCTCCGCCCC CAGCGCTTGCTCGAGCTTCGAAACTTCATCTTGGACGATTACTTTGACAA CAAGTATAAGGTCAGGGTAGACAGATGGGGAGGGGGGGAGGGAGGGGAAG GGCGTGGAGGAGAGAGGACGTTGAACGCGCGACGTGCTAAAGGTAGGATG AGCGAGGGGGATCGCAAGATAGTGATAGAAAAAGAGAATAGGATCAATGA TCCAGGAATATAATGAAGCGCAATCAGTATTCACTCGGTATTTCCTTCGT CCCTCCGCTCCCTTTCTCCTGTCACAGAGCGTGGTCGAGATCCAACCCCC GACCCCGACCTCGGTAAGGAGAGAGATTATCCTGCACCCCAAGCGCCATC CGTCACCCCCACCAGCGGGGGGAGACGTGCCCAAACAGATACGAATGAAG TCAATGCCGGAAGAGCTGGGGGAAGAGGAGCGGGAGGCGACGACAACCAC ATAGAGATAGGAGGATGTTGACGTGGTGAACGGTAGCTAGTAACGGAGAG AGGGGAGAGGGGGCCCGCGGGCGAAAGCAAAGGAAGTGACTGTAAGCAA back to topprotein sequence of NO04G00110.2 >NO04G00110.2-protein ID=NO04G00110.2-protein|Name=NO04G00110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp MLPRVSRLAVLLPTAITHTTVCKKICAVTSSRRRPRQDNPPLLPQSLSGL GGGGGRSISTTLPTAAPAPKRAGGGGGPRGKSPNNLAKESAFVINEAIKA RTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCK LMNARREEYQRQKKERRMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFF EQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKVRVDRWGGG EGGEGRGGERTLNARRAKGRMSEGDRKIVIEKENRINDPGI* back to topmRNA from alignment at chr4:54588..56504- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G00110.2 ID=NO04G00110.2|Name=NO04G00110.2|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at chr4:54588..56504- (Nannochloropsis oceanica) AGATCTCTGGCTGAGCCCTGCTCAAGGACAGTGCGCTCCTCCCCGTCACA
AGCATCCCCATCATCGCCTCCCCACTCTCACTCTACAATGCTGCCTCGAG
TGAGCCGTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTC
TGCAAAAAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGA
CAACCCTCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTG
GGAGGAGCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGA
GCCGGTGGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTGGCTAA
AGAGAGGTAGGTGCAGGGCGAAAGACAGTATGGGTGAGCAAGTGGTAGGA
GTAGCGTGATGCTCCTCTTTCCCTCTCTCCCCCTCTCACCCCGCCCCTTC
CGCCCTCCCTTCTCTCAGTGCCTTTGTGATCAACGAGGCCATCAAAGCGC
GTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGAGTGGGCCGCCCACC
TCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAGGCGAAGGAGGTGGG
GCTAGACCTGGTGTTGGGTAAGGATTGGATGGAAAGAGAGCTGGGAAAAC
GGGAGAGACAGAAAAGATGAAGAAGTTCTAGCCCATTTTCACTTTTTTTT
TCATCCGTTATAATATTCAGCAGCCGCACCTTTCACTATGCGCTAATTCT
CCTCTCCCAACTTTCCCCCCTGTCCACGCTGGCAGTTACCACGGCCTCGG
AGCCCTGGGTTTGCAAGCTCATGAACGCCCGTCGTGAAGAGTACCAGCGG
CAGAAGAAGGAGAGACGGATGAAGAAGAGCAGCAACACTTTGAAGGAGAT
CAGCATCAGGGTAGGGAGGCAGGGAGGGAGGAATAGAGAGATGTGAAAGC
AAGCACGAAGGCGACCCTGCCGTGTCAACGCGCGAAATTGGCCCTCACCG
ACCACAATATCTCTCCCTTCCTCTTCCGACATCTTTCAGGGAAACATCTC
GGACCACGATTTGCTGATCAAACTGAGGCGTGTCGACGAGTTCTTCGAGC
AAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGGCAGCCAGGTATGG
GCGGCTTCTTCTCCCCTCGTCCTTATTCCGTATTCCTGTCGTTGATATGC
CTCTGTTGCGTCGGGTGGTCGTAGGAGCTGTCTTTGCCATAATTTGTCGC
AAGACGTTTGTCGTCCGCTCACATGCCAATATCGTCCTCCGTCCTTCCCT
TCTTTTCTCCCTTTCTCCCCCCCCCGCCCCCCACTTCCACCAATTCACTC
TAGATGAATCTCCGCCCCCAGCGCTTGCTCGAGCTTCGAAACTTCATCTT
GGACGATTACTTTGACAACAAGTATAAGGTCAGGGTAGACAGATGGGGAG
GGGGGGAGGGAGGGGAAGGGCGTGGAGGAGAGAGGACGTTGAACGCGCGA
CGTGCTAAAGGTAGGATGAGCGAGGGGGATCGCAAGATAGTGATAGAAAA
AGAGAATAGGATCAATGATCCAGGAATATAATGAAGCGCAATCAGTATTC
ACTCGGTATTTCCTTCGTCCCTCCGCTCCCTTTCTCCTGTCACAGAGCGT
GGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGATTATCC
TGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACGTGCCC
AAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAGGAGCG
GGAGGCGACGACAACCACATAGAGATAGGAGGATGTTGACGTGGTGAACG
GTAGCTAGTAACGGAGAGAGGGGAGAGGGGGCCCGCGGGCGAAAGCAAAG
GAAGTGACTGTAAGCAA back to topCoding sequence (CDS) from alignment at chr4:54588..56504- >NO04G00110.2 ID=NO04G00110.2|Name=NO04G00110.2|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr4:54588..56504- (Nannochloropsis oceanica) ATGCTGCCTCGAGTGAGCCGTCTCGCCGTCCTCCTCCCTACAGCCATTAC ACACACCACCGTCTGCAAAAAAATATGTGCCGTCACAAGCTCAAGAAGGA GGCCAAGGCAAGACAACCCTCCCCTCCTGCCGCAGTCGCTCTCCGGACTT GGTGGGGGTGGTGGGAGGAGCATCAGCACAACCCTTCCGACCGCCGCCCC GGCGCCCAAGCGAGCCGGTGGCGGTGGTGGCCCTAGAGGGAAAAGCCCGA ACAATCTGGCTAAAGAGAGTGCCTTTGTGATCAACGAGGCCATCAAAGCG CGTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGAGTGGGCCGCCCAC CTCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAGGCGAAGGAGGTGG GGCTAGACCTGGTGTTGGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAG CTCATGAACGCCCGTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACG GATGAAGAAGAGCAGCAACACTTTGAAGGAGATCAGCATCAGGGGAAACA TCTCGGACCACGATTTGCTGATCAAACTGAGGCGTGTCGACGAGTTCTTC GAGCAAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGGCAGCCAGAT GAATCTCCGCCCCCAGCGCTTGCTCGAGCTTCGAAACTTCATCTTGGACG ATTACTTTGACAACAAGTATAAGGTCAGGGTAGACAGATGGGGAGGGGGG GAGGGAGGGGAAGGGCGTGGAGGAGAGAGGACGTTGAACGCGCGACGTGC TAAAGGTAGGATGAGCGAGGGGGATCGCAAGATAGTGATAGAAAAAGAGA ATAGGATCAATGATCCAGGAATATAA back to top
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