NO04G00090.1, NO04G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00090.1
Unique NameNO04G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1795
Alignment locationchr4:39391..41465 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:39391..41465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00090.1 vs.
Match: EWM28409.1 (hypothetical protein Naga_100088g9 [Nannochloropsis gaditana]; EWM28410.1 hypothetical protein Naga_100088g9 [Nannochloropsis gaditana])

HSP 1 Score: 714.1 bits (1842), Expect = 2.900e-202
Identity = 344/485 (70.93%), Postives = 400/485 (82.47%), Query Frame = 0 
Query:    1 MECRSFQAAPSSLFSFILMLDTTWLVVIAWSSLEILFYFVICRLIHPRIERLRTAPSHPSQQPPRECLARLTDTLHRLQGAYSPETFWSGWFKGAAHAEIWRENVKAFLCWAIWNVDTPGDLPEAEDALALEATVKLMEGLQGKPFPRGYNPDIEHVAFTREALHFSHRLLMFYVAVKVAQMMGHGFLRLMGHRRYLTPTHNLVYWHRPCQQQEGSVKQPPLIFFHGISPGIWFYIPFLSRLGKGREIILLEVPHIITQLSFEAPDRAETVESLAEILSLHSIAHCAVAGHSFGSIVAGWAVAAFPSQVQQLVLIDPVCLLLCLPDVAVNFLYRSPPSNLFHRTLKDLLDPSSEITVSHALRRHFWWYQNVTWLQDVTCPLVVALSSEDDIVPSTAIRAYVQRHYGMWE-LKQKEKQEREELEDQRNKKGNGRLVYWKGIGHGQMLLSLSAQDRLIEAMHCQAKESGLVRIAANDMTEKRRQKRK 485
            M+       PS LFSF+L  +      + W SLE+LFYFVI RLI+PRI++LR APSHP ++ P ECLARLTD LHRL+G YSPE+FWSGWFKGA H  I R NVK FLCWAIW+V +  +L ++ D LALE TV LME LQGK FP G+NP++EHVAFTRE L+F+HRLL+FYV VK AQ+MGHGFL L GHRRY+TPTHNL YWHRPCQQ+EGS+KQPPL+FFHGISPGIWFYIPFL+RLG+GREIILLEVPHI+TQLSFEAPDR ETV+SLAE+L+LHSI+ CAVAGHSFGSI+AGWA  AFP  V+QLVLIDPVCLLLCLPDVAVNFLYRSPP+NLFHRTLKD +DPSSEITVSHALRRHFWWYQN+ WLQDV+CPLVVALSSEDDIVPSTAI  YVQRHY M E +K +++ +  E+ DQ N  G+GRL+YW+GIGHGQML+SL AQDRLI A+  QA ESGL   A +     ++  R+
Sbjct:    1 MDSSKTSDTPSFLFSFLLSAENASKAFLLWCSLEVLFYFVINRLIYPRIKQLRAAPSHPPEKSPLECLARLTDALHRLRGVYSPESFWSGWFKGAMHENIRRNNVKEFLCWAIWHVKSSEELAKS-DVLALEKTVVLMERLQGKSFPAGHNPEVEHVAFTREPLYFAHRLLIFYVVVKCAQLMGHGFLLLTGHRRYVTPTHNLTYWHRPCQQEEGSIKQPPLLFFHGISPGIWFYIPFLTRLGRGREIILLEVPHIVTQLSFEAPDRIETVQSLAEVLALHSISKCAVAGHSFGSIIAGWAATAFPQHVKQLVLIDPVCLLLCLPDVAVNFLYRSPPTNLFHRTLKDFIDPSSEITVSHALRRHFWWYQNICWLQDVSCPLVVALSSEDDIVPSTAIHYYVQRHYRMQEAVKHEKEDDAGEMTDQSNASGSGRLIYWRGIGHGQMLVSLKAQDRLIAAICKQAMESGLATRAEDIKNSGQKSVRR 484
The following BLAST results are available for this feature:
BLAST of NO04G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28409.12.900e-20270.93hypothetical protein Naga_100088g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00090NO04G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00090.1NO04G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00090.1.cds1NO04G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00090.1.cds2NO04G00090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00090.1 ID=NO04G00090.1|Name=NO04G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp
CACAGCCATGGAATGCCGCTCTTTCCAGGCGGCCCCCTCCTCCCTTTTCT
CCTTTATTCTGATGCTAGACACGACCTGGCTAGTCGTCATTGCGTGGTCC
AGTCTGGAGATCCTCTTTTACTTCGTCATCTGCCGCCTCATCCACCCCCG
GATCGAGCGGCTGCGCACCGCGCCCTCCCACCCTTCCCAGCAACCCCCGC
GCGAGTGCCTGGCCAGGCTGACTGACACTTTGCATCGGCTACAAGGTGCC
TACAGCCCAGAAACATTCTGGTCGGGTTGGTTCAAGGGGGCGGCGCATGC
GGAGATCTGGCGGGAGAACGTGAAGGCTTTCTTGTGCTGGGCCATCTGGA
ATGTGGACACGCCAGGAGACCTGCCCGAGGCTGAAGACGCCCTCGCTTTG
GAGGCGACGGTGAAGCTGATGGAGGGGCTGCAGGGCAAGCCCTTCCCTCG
CGGGTATAATCCGGACATTGAGCACGTGGCTTTCACCCGAGAGGCCCTCC
ACTTCTCCCACCGCCTACTCATGTTCTACGTTGCTGTCAAGGTGGCTCAG
ATGATGGGGCACGGCTTTCTCCGCCTCATGGGTCACCGGCGATATCTGAC
CCCCACCCACAACCTCGTCTATTGGCATCGGCCCTGTCAGCAGCAAGAAG
GCTCGGTCAAGCAACCGCCTCTAATCTTTTTTCATGGCATTAGTCCAGGT
ATCTGGTTCTATATTCCATTTCTTTCTCGTCTTGGCAAGGGTCGGGAGAT
TATCCTGCTGGAGGTGCCGCACATTATCACCCAGCTCTCCTTCGAAGCGC
CCGACCGGGCCGAGACAGTGGAGTCGCTGGCCGAGATCCTTTCCTTACAT
TCCATAGCTCATTGTGCCGTGGCCGGGCACTCCTTCGGCTCCATCGTTGC
CGGATGGGCCGTAGCAGCATTTCCATCCCAGGTCCAGCAGCTGGTGCTGA
TCGACCCGGTCTGCCTCCTCCTTTGCCTGCCCGACGTGGCAGTTAACTTC
CTGTACAGGTCTCCTCCCTCCAATCTCTTCCACCGCACTCTGAAAGATCT
GCTAGACCCCTCCAGCGAGATCACAGTCTCTCATGCCTTGAGGCGGCACT
TCTGGTGGTACCAGAACGTGACGTGGCTGCAGGATGTGACCTGCCCCTTG
GTCGTGGCCCTCTCCTCCGAGGACGACATTGTCCCCTCGACCGCCATCCG
GGCCTACGTCCAGCGGCACTACGGCATGTGGGAATTGAAACAGAAAGAGA
AGCAAGAAAGAGAGGAGTTGGAGGACCAGAGGAATAAGAAAGGAAATGGA
CGGCTAGTGTATTGGAAGGGTATTGGACACGGACAGATGCTGCTGTCGCT
GAGTGCACAGGACAGGTTGATCGAAGCCATGCACTGCCAAGCCAAGGAGT
CGGGGCTGGTGAGAATAGCAGCCAATGACATGACCGAGAAGCGCAGGCAG
AAACGGAAGGGATTGAGCGCCGCTTGAATTATACGTGTTGATCCTTGAAG
GGTATGTGCATAGGAGGAAAAAATATGGGACAAAGGAACCCTTTACAAGA
AGAGAAGTTTTTCACGCCGTTTTGGCAGGATTAAAGGGTGAAGGGATGGA
GGCAAATGATTTACTCATGCATAATGACTGTTACAATTTGTACAAGAGAA
TGTATGTTTAGTGCTGCTGAAGTGTGATGCATGTATGTTTGCGTCCTGTC
GTATCGTCAAGTCGAGCTAGGACCAGAGGTAAAAATGGATGCGAGGAGAA
AGAAAGGAAAAAACGAAGAACAAATGCTGTAAAAGAAAAGACCAG
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protein sequence of NO04G00090.1

>NO04G00090.1-protein ID=NO04G00090.1-protein|Name=NO04G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MECRSFQAAPSSLFSFILMLDTTWLVVIAWSSLEILFYFVICRLIHPRIE
RLRTAPSHPSQQPPRECLARLTDTLHRLQGAYSPETFWSGWFKGAAHAEI
WRENVKAFLCWAIWNVDTPGDLPEAEDALALEATVKLMEGLQGKPFPRGY
NPDIEHVAFTREALHFSHRLLMFYVAVKVAQMMGHGFLRLMGHRRYLTPT
HNLVYWHRPCQQQEGSVKQPPLIFFHGISPGIWFYIPFLSRLGKGREIIL
LEVPHIITQLSFEAPDRAETVESLAEILSLHSIAHCAVAGHSFGSIVAGW
AVAAFPSQVQQLVLIDPVCLLLCLPDVAVNFLYRSPPSNLFHRTLKDLLD
PSSEITVSHALRRHFWWYQNVTWLQDVTCPLVVALSSEDDIVPSTAIRAY
VQRHYGMWELKQKEKQEREELEDQRNKKGNGRLVYWKGIGHGQMLLSLSA
QDRLIEAMHCQAKESGLVRIAANDMTEKRRQKRKGLSAA*
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mRNA from alignment at chr4:39391..41465+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00090.1 ID=NO04G00090.1|Name=NO04G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2075bp|location=Sequence derived from alignment at chr4:39391..41465+ (Nannochloropsis oceanica)
CACAGCCATGGAATGCCGCTCTTTCCAGGCGGCCCCCTCCTCCCTTTTCT
CCTTTATTCTGATGCTAGACACGACCTGGCTAGTCGTCATTGCGTGGTCC
AGTCTGGAGATCCTCTTTTACTTCGTCATCTGCCGCCTCATCCACCCCCG
GATCGAGCGGCTGCGCACCGCGCCCTCCCACCCTTCCCAGCAACCCCCGC
GCGAGTGCCTGGCCAGGCTGACTGACACTTTGCATCGGCTACAAGGTGCC
TACAGCCCAGAAACATTCTGGTCGGGTTGGTTCAAGGGGGCGGCGCATGC
GGAGATCTGGCGGGAGAACGTGAAGGCTTTCTTGTGCTGGGCCATCTGGA
ATGTGGACACGCCAGGAGACCTGCCCGAGGCTGAAGACGCCCTCGCTTTG
GAGGCGACGGTGAAGCTGATGGAGGGGCTGCAGGGCAAGCCCTTCCCTCG
CGGGTATAATCCGGACATTGAGCACGTGGCTTTCACCCGAGAGGCCCTCC
ACTTCTCCCACCGCCTACTCATGTTCTACGTTGCTGTCAAGGTGGCTCAG
ATGATGGGGCACGGCTTTCTCCGCCTCATGGGTCACCGGCGATATCTGAC
CCCCACCCACAACCTCGTCTATTGGCATCGGCCCTGTCAGCAGCAAGAAG
GCTCGGTCAAGCAACCGCCTCTAATCTTTTTTCATGGCATTAGTCCAGGT
AGGTTGGTTACGATGGGGACTGGGGGTGGGTGGATGGTGAGTGTGTGGGT
TTGGGGGTTTGAGGGAATAATGCGTACGTGTGCGTAGAGCATAAAGTCAT
TTTACACTTACTCTCGCACGTTGCATCATTTTTTAATCCCCCCCTCTCTT
TGGATTCAGTCAGAAAGGAACCTAAAGGGTTTTTGGTGGATTGTCGATCC
TTTGCCTATCCCTTCTCCTTCACCTTTCCCTCTCTCCCCCACCTCCCTCT
TCCTCCAATTCTACCACTCCCTCAAAAGGTATCTGGTTCTATATTCCATT
TCTTTCTCGTCTTGGCAAGGGTCGGGAGATTATCCTGCTGGAGGTGCCGC
ACATTATCACCCAGCTCTCCTTCGAAGCGCCCGACCGGGCCGAGACAGTG
GAGTCGCTGGCCGAGATCCTTTCCTTACATTCCATAGCTCATTGTGCCGT
GGCCGGGCACTCCTTCGGCTCCATCGTTGCCGGATGGGCCGTAGCAGCAT
TTCCATCCCAGGTCCAGCAGCTGGTGCTGATCGACCCGGTCTGCCTCCTC
CTTTGCCTGCCCGACGTGGCAGTTAACTTCCTGTACAGGTCTCCTCCCTC
CAATCTCTTCCACCGCACTCTGAAAGATCTGCTAGACCCCTCCAGCGAGA
TCACAGTCTCTCATGCCTTGAGGCGGCACTTCTGGTGGTACCAGAACGTG
ACGTGGCTGCAGGATGTGACCTGCCCCTTGGTCGTGGCCCTCTCCTCCGA
GGACGACATTGTCCCCTCGACCGCCATCCGGGCCTACGTCCAGCGGCACT
ACGGCATGTGGGAATTGAAACAGAAAGAGAAGCAAGAAAGAGAGGAGTTG
GAGGACCAGAGGAATAAGAAAGGAAATGGACGGCTAGTGTATTGGAAGGG
TATTGGACACGGACAGATGCTGCTGTCGCTGAGTGCACAGGACAGGTTGA
TCGAAGCCATGCACTGCCAAGCCAAGGAGTCGGGGCTGGTGAGAATAGCA
GCCAATGACATGACCGAGAAGCGCAGGCAGAAACGGAAGGGATTGAGCGC
CGCTTGAATTATACGTGTTGATCCTTGAAGGGTATGTGCATAGGAGGAAA
AAATATGGGACAAAGGAACCCTTTACAAGAAGAGAAGTTTTTCACGCCGT
TTTGGCAGGATTAAAGGGTGAAGGGATGGAGGCAAATGATTTACTCATGC
ATAATGACTGTTACAATTTGTACAAGAGAATGTATGTTTAGTGCTGCTGA
AGTGTGATGCATGTATGTTTGCGTCCTGTCGTATCGTCAAGTCGAGCTAG
GACCAGAGGTAAAAATGGATGCGAGGAGAAAGAAAGGAAAAAACGAAGAA
CAAATGCTGTAAAAGAAAAGACCAG
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Coding sequence (CDS) from alignment at chr4:39391..41465+

>NO04G00090.1 ID=NO04G00090.1|Name=NO04G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at chr4:39391..41465+ (Nannochloropsis oceanica)
ATGGAATGCCGCTCTTTCCAGGCGGCCCCCTCCTCCCTTTTCTCCTTTAT
TCTGATGCTAGACACGACCTGGCTAGTCGTCATTGCGTGGTCCAGTCTGG
AGATCCTCTTTTACTTCGTCATCTGCCGCCTCATCCACCCCCGGATCGAG
CGGCTGCGCACCGCGCCCTCCCACCCTTCCCAGCAACCCCCGCGCGAGTG
CCTGGCCAGGCTGACTGACACTTTGCATCGGCTACAAGGTGCCTACAGCC
CAGAAACATTCTGGTCGGGTTGGTTCAAGGGGGCGGCGCATGCGGAGATC
TGGCGGGAGAACGTGAAGGCTTTCTTGTGCTGGGCCATCTGGAATGTGGA
CACGCCAGGAGACCTGCCCGAGGCTGAAGACGCCCTCGCTTTGGAGGCGA
CGGTGAAGCTGATGGAGGGGCTGCAGGGCAAGCCCTTCCCTCGCGGGTAT
AATCCGGACATTGAGCACGTGGCTTTCACCCGAGAGGCCCTCCACTTCTC
CCACCGCCTACTCATGTTCTACGTTGCTGTCAAGGTGGCTCAGATGATGG
GGCACGGCTTTCTCCGCCTCATGGGTCACCGGCGATATCTGACCCCCACC
CACAACCTCGTCTATTGGCATCGGCCCTGTCAGCAGCAAGAAGGCTCGGT
CAAGCAACCGCCTCTAATCTTTTTTCATGGCATTAGTCCAGGTATCTGGT
TCTATATTCCATTTCTTTCTCGTCTTGGCAAGGGTCGGGAGATTATCCTG
CTGGAGGTGCCGCACATTATCACCCAGCTCTCCTTCGAAGCGCCCGACCG
GGCCGAGACAGTGGAGTCGCTGGCCGAGATCCTTTCCTTACATTCCATAG
CTCATTGTGCCGTGGCCGGGCACTCCTTCGGCTCCATCGTTGCCGGATGG
GCCGTAGCAGCATTTCCATCCCAGGTCCAGCAGCTGGTGCTGATCGACCC
GGTCTGCCTCCTCCTTTGCCTGCCCGACGTGGCAGTTAACTTCCTGTACA
GGTCTCCTCCCTCCAATCTCTTCCACCGCACTCTGAAAGATCTGCTAGAC
CCCTCCAGCGAGATCACAGTCTCTCATGCCTTGAGGCGGCACTTCTGGTG
GTACCAGAACGTGACGTGGCTGCAGGATGTGACCTGCCCCTTGGTCGTGG
CCCTCTCCTCCGAGGACGACATTGTCCCCTCGACCGCCATCCGGGCCTAC
GTCCAGCGGCACTACGGCATGTGGGAATTGAAACAGAAAGAGAAGCAAGA
AAGAGAGGAGTTGGAGGACCAGAGGAATAAGAAAGGAAATGGACGGCTAG
TGTATTGGAAGGGTATTGGACACGGACAGATGCTGCTGTCGCTGAGTGCA
CAGGACAGGTTGATCGAAGCCATGCACTGCCAAGCCAAGGAGTCGGGGCT
GGTGAGAATAGCAGCCAATGACATGACCGAGAAGCGCAGGCAGAAACGGA
AGGGATTGAGCGCCGCTTGA
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Synonyms
Publications