NO04G00080.1, NO04G00080.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G00080.1
Unique Name	NO04G00080.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2225
Alignment location	chr4:36695..39390 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:36695..39390 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO04G00080.1 vs.
Match: EWM28405.1 (cen [Nannochloropsis gaditana])

HSP 1 Score: 284.6 bits (727), Expect = 2.800e-73
Identity = 147/201 (73.13%), Postives = 164/201 (81.59%), Query Frame = 0

Query:   45 MKFLVTSALAFLALAPFALAVPVTTVAAEALTSLKTAQIIPDVISSFVPTATLTVDYGRMTPVKMGEEMLPSEVAKEPVVTFTGTDPKKMYTLVMTDPGVLDIKTLRVEQQSAWQWLHWIVVNVPGDMAVPAAGKVVQPYGPPAPPAGNHRYTFLLFEQKAEINPATPKERGSFDTRAFAAANSLTPVGGFYFLAQPEAAQ 246
            M FL   AL  L + P ALA P T  AA +L SLKTA IIPDVIS+F PTATL V YG+  P++MGE++LPSE A  P VTF GT+P+K+YTLVMTDPGVLDIKTLR  QQSAWQWLHWIVVNVPG+ AVPAAG+V+QPYG PAPPAGNHRYTF+LFEQKAEINPA PK R +FDTRAFA AN LTP+GGFYFLA PE AQ
Sbjct:    1 MNFLRPLALTLL-MVPSALAAPATPAAA-SLESLKTAHIIPDVISNFDPTATLRVQYGKQAPLEMGEQILPSEAADPPSVTFMGTNPQKLYTLVMTDPGVLDIKTLRGPQQSAWQWLHWIVVNVPGEKAVPAAGQVLQPYGQPAPPAGNHRYTFILFEQKAEINPAVPKGRDAFDTRAFAIANGLTPIGGFYFLAGPETAQ 199

The following BLAST results are available for this feature:

BLAST of NO04G00080.1 vs.

BLAST of NO04G00080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28405.1	2.800e-73	73.13	cen [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO04G00080	NO04G00080	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO04G00080.1	NO04G00080.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO04G00080.1.cds1	NO04G00080.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G00080.1.cds2	NO04G00080.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO04G00080.1.cds3	NO04G00080.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:36695..39390-
coding sequence from alignment at chr4:36695..39390-

mRNA sequence

>NO04G00080.1 ID=NO04G00080.1|Name=NO04G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2225bp
GGTGGGGTGTTGTAGCGTGGAGGAGGAGAGAAAAGGGTGAAAAAGATGGG
AGGTAAGTATGGTCATCGGGAAAAGACCAGGTAACCAAATGTGCAAAAGG
ATCGACCCAAAGGGAAACAGGAGGTAGGGGTCAATCCCCCCTCGGCAGCA
GCACACAAGGCCGGGGGGGTACCGGAGTGGGAATCGAGGGGAGGAGGACA
GTGGGTATGTAGGTGAATTCGTCTTTTCGAGCTGTACCTGGAAAAGGGGG
GCGAGTACTTGTATTGATTGGGTTGGAAATAGGCGCACAGAGTGTATGGC
CGGGTAGACGCAGAGCATTACGTTCTGGAAAAAGAATATAATGAGCCAAG
ACGACAACGACACTCCGCTAAGCGACCAGAAGAAGTCGTCCCCGACTCCG
TCTGTGGAGTCACGAGTGCAGAATCGTGAAAGGGGATGCACATGACTGCT
TTGAGCGAATGGAGTCAAGTATTCATTGGCCAGTGGGTGCGCTTGATTGG
ACACGACGGGTCGGCAGTCACCCGGCAGAGAATAACAATGTGTGTGAGAG
AGTACCTTCGACTGCAGGGGTAAAGGTTCTGTCGCCCTTATGTAAATGCC
GGGGTACAAGGTGTATGTGCAAAAGTGACACGTCGAAGAAAGAGGTTTTG
GGAGAGCATACGTCGTGTCGCAGAACCCGTGCCTTCCTCTGAGGATTCCA
CTGAGGGGAAGCTCGATGCCGAGGGGTGGCAGGCGATAGAGTAGTTTTCG
TCGTGTTGTATTTGCTCTCTTAAAGAAGTTGTCATGGTGTAGCGAGAACC
AGAAAGTTGGGGCTGAGTGCTAGGGTCGACGGCGTAAGAGAGCCCGTGCG
GTAGCAAAGGATCGACCTGCTTATTTTTGAAAAGCTGTTAATCTGCATTT
AAAAAAATGACCTTCCGTCTTTTCGCTGATCGGTGACTGCATCCCCCCAA
AAAGGCAGAGAGGCATCCCCAGGGCAAGATCCTTCTGGATATCATAATTA
TATTGTTCTTTATAGAAAAACACTTGTTGTGTTGGCGGTTGATTTCAATC
TCGTCTTTTGTGGTCTATCCTCTGCAGCTACTGCATGCACAGGCAGTGTC
CAAGCAAGGAAGTAACAAGGCCCAAGCCACAATCCTTCCTCACCCTCACT
GAGTATCACCCCACACATCATCCTACACATGTGTTTTCGCATCTTGCTGT
GTTTGTGGCATGCCCTTGCTCTATCCTGTATGGCACAAGACGCGTACACA
AGCCACCAACCCCGCTTCCCCACACCAACCAACAGCCCCACACGAAACAG
TCCCAAAATCATGAAGTTCCTCGTCACCTCTGCCCTGGCATTTCTTGCTC
TTGCACCCTTTGCCCTGGCTGTCCCTGTCACCACGGTGGCTGCCGAGGCC
CTGACGTCGCTCAAGACCGCACAGATTATTCCGGACGTGATCAGCAGCTT
TGTGCCCACGGCTACGCTGACAGTGGACTACGGCAGAATGACCCCTGTTA
AAATGGGAGAGGAGATGCTGCCCTCAGAGGTCGCTAAAGAGCCCGTGGTC
ACTTTCACCGGCACGGATCCCAAGAAGATGTACACCCTGGTCATGACGGA
CCCTGGCGTTCTCGACATTAAGACTCTGCGTGTCGAGCAGCAGAGTGCGT
GGCAGTGGCTGCACTGGATCGTGGTGAACGTGCCGGGCGACATGGCAGTC
CCCGCGGCTGGCAAGGTCGTCCAGCCCTACGGCCCGCCTGCACCGCCGGC
TGGCAACCACCGCTATACCTTCCTCCTGTTTGAGCAAAAGGCTGAGATCA
ACCCCGCAACCCCTAAGGAGCGCGGCTCCTTCGACACTCGCGCTTTTGCC
GCCGCCAACAGCCTTACCCCCGTGGGTGGCTTCTACTTCCTGGCCCAGCC
CGAGGCGGCTCAGTAAAGCGTGGATGCAGAGTTTGAAGGGAGAAAAGAAG
CAAGGAGTATACATTCCTGGATTCTTTTAATGAGGATATGGCTGGGAATT
GCCGAAGAGAGACGGAATTGCCCATGCCTCCCAGACGTACGGAGCCGATT
GCCAAAAGGGTGCGGCGTGTTTGCTTGTCGAGGTTGAGCCCTGTCCAGTT
ATTAAGTTGTACATTTATATGATGATCAAGAGGGAAAATCTGCGCAAACG
TGTACAAGAAGCAGTCGAGTGTCATGACAGATTGAGTGTCTTCGCTCTTG
CTACAGATCGGGGAGTCAGGATGTG

protein sequence of NO04G00080.1

>NO04G00080.1-protein ID=NO04G00080.1-protein|Name=NO04G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MCFRILLCLWHALALSCMAQDAYTSHQPRFPTPTNSPTRNSPKIMKFLVT
SALAFLALAPFALAVPVTTVAAEALTSLKTAQIIPDVISSFVPTATLTVD
YGRMTPVKMGEEMLPSEVAKEPVVTFTGTDPKKMYTLVMTDPGVLDIKTL
RVEQQSAWQWLHWIVVNVPGDMAVPAAGKVVQPYGPPAPPAGNHRYTFLL
FEQKAEINPATPKERGSFDTRAFAAANSLTPVGGFYFLAQPEAAQ*

mRNA from alignment at chr4:36695..39390-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO04G00080.1 ID=NO04G00080.1|Name=NO04G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2696bp|location=Sequence derived from alignment at chr4:36695..39390- (Nannochloropsis oceanica)
GGTGGGGTGTTGTAGCGTGGAGGAGGAGAGAAAAGGGTGAAAAAGATGGG
AGGTAAGTATGGTCATCGGGAAAAGACCAGGTAACCAAATGTGCAAAAGG
ATCGACCCAAAGGGAAACAGGAGGTAGGGGTCAATCCCCCCTCGGCAGCA
GCACACAAGGCCGGGGGGGTACCGGAGTGGGAATCGAGGGGAGGAGGACA
GTGGGTATGTAGGTGAATTCGTCTTTTCGAGCTGTACCTGGAAAAGGGGG
GCGAGTACTTGTATTGATTGGGTTGGAAATAGGCGCACAGAGTGTATGGC
CGGGTAGACGCAGAGCATTACGTTCTGGAAAAAGAATATAATGAGCCAAG
ACGACAACGACACTCCGCTAAGCGACCAGAAGAAGTCGTCCCCGACTCCG
TCTGTGGAGTCACGAGTGCAGAATCGTGAAAGGGGATGCACATGACTGCT
TTGAGCGAATGGAGTCAAGTATTCATTGGCCAGTGGGTGCGCTTGATTGG
ACACGACGGGTCGGCAGTCACCCGGCAGAGAATAACAATGTGTGTGAGAG
AGTACCTTCGACTGCAGGGGTAAAGGTTCTGTCGCCCTTATGTAAATGCC
GGGGTACAAGGTGTATGTGCAAAAGTGACACGTCGAAGAAAGAGGTTTTG
GGAGAGCATACGTCGTGTCGCAGAACCCGTGCCTTCCTCTGAGGATTCCA
CTGAGGGGAAGCTCGATGCCGAGGGGTGGCAGGCGATAGAGTAGTTTTCG
TCGTGTTGTATTTGCTCTCTTAAAGAAGTTGTCATGGTGTAGCGAGAACC
AGAAAGTTGGGGCTGAGTGCTAGGGTCGACGGCGTAAGAGAGCCCGTGCG
GTAGCAAAGGATCGACCTGCTTATTTTTGAAAAGCTGTTAATCTGCATTT
AAAAAAATGACCTTCCGTCTTTTCGCTGATCGGTGACTGCATCCCCCCAA
AAAGGCAGAGAGGCATCCCCAGGGCAAGATCCTTCTGGATATCATAATTA
TATTGTTCTTTATAGAAAAACACTTGTTGTGTTGGCGGTTGATTTCAATC
TCGTCTTTTGTGGTCTATCCTCTGCAGCTACTGCATGCACAGGCAGTGTC
CAAGCAAGGAAGTAACAAGGCCCAAGCCACAATCCTTCCTCACCCTCACT
GAGTATCACCCCACACATCATCCTACACATGTGTTTTCGCATCTTGCTGT
GTTTGTGGCATGCCCTTGCTCTATCCTGTATGGCACAAGACGCGTACACA
AGCCACCAACCCCGCTTCCCCACACCAACCAACAGCCCCACACGAAACAG
TCCCAAAATCATGAAGTTCCTCGTCACCTCTGCCCTGGCATTTCTTGCTC
TTGGTTAGTACTCTTCTTTCTTCTTTTTGTTGCCTGTCCATCCTTTACCT
CCTTCCATTTTCCCCAGCTTCACCTCAACCCAGCCATTATCATGGTCGTG
TCCTTTTCTTCAACACTTCCTTCCCCTTCTCATTCCCTGTTCACCAAAAT
CTCGATACATGGCCCTTTCTTTTTTCTTCAGCACCCTTTGCCCTGGCTGT
CCCTGTCACCACGGTGGCTGCCGAGGCCCTGACGTCGCTCAAGACCGCAC
AGATTATTCCGGACGTGATCAGCAGCTTTGTGCCCACGGCTACGCTGACA
GTGGACTACGGCAGAATGACCCCTGTTAAAATGGGAGAGGAGATGCTGCC
CTCAGAGGTCGCTAAAGAGCCCGTGGTCACTTTCACCGGCACGGATCCCA
AGAAGGTGTGAAGAAGTAGGGAAGAATGGCTGGGTGGGCAGGCGGGAAGG
GTGAGAGGTTGAGATAAGAGATGACAGATTGGCCATTGTAGAAAGAATAA
GAGGGGTTTCCACAAGACTCATTTATAGACGAGAGCGACAGAAATATTCA
CTCCCCATGCTTTCTCACACTCACACTCCTCTGTTTTCCCCGCACTCGCC
ACATACCCACGTCACATCGTATGCTTGTCTTACACTCCTGCATTCCTTCC
CTTCCCGCTCCCGCCCCTTATATCCCCTTTCCCTCCATCTCTCTACAGAT
GTACACCCTGGTCATGACGGACCCTGGCGTTCTCGACATTAAGACTCTGC
GTGTCGAGCAGCAGAGTGCGTGGCAGTGGCTGCACTGGATCGTGGTGAAC
GTGCCGGGCGACATGGCAGTCCCCGCGGCTGGCAAGGTCGTCCAGCCCTA
CGGCCCGCCTGCACCGCCGGCTGGCAACCACCGCTATACCTTCCTCCTGT
TTGAGCAAAAGGCTGAGATCAACCCCGCAACCCCTAAGGAGCGCGGCTCC
TTCGACACTCGCGCTTTTGCCGCCGCCAACAGCCTTACCCCCGTGGGTGG
CTTCTACTTCCTGGCCCAGCCCGAGGCGGCTCAGTAAAGCGTGGATGCAG
AGTTTGAAGGGAGAAAAGAAGCAAGGAGTATACATTCCTGGATTCTTTTA
ATGAGGATATGGCTGGGAATTGCCGAAGAGAGACGGAATTGCCCATGCCT
CCCAGACGTACGGAGCCGATTGCCAAAAGGGTGCGGCGTGTTTGCTTGTC
GAGGTTGAGCCCTGTCCAGTTATTAAGTTGTACATTTATATGATGATCAA
GAGGGAAAATCTGCGCAAACGTGTACAAGAAGCAGTCGAGTGTCATGACA
GATTGAGTGTCTTCGCTCTTGCTACAGATCGGGGAGTCAGGATGTG

Coding sequence (CDS) from alignment at chr4:36695..39390-

>NO04G00080.1 ID=NO04G00080.1|Name=NO04G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr4:36695..39390- (Nannochloropsis oceanica)
ATGTGTTTTCGCATCTTGCTGTGTTTGTGGCATGCCCTTGCTCTATCCTG
TATGGCACAAGACGCGTACACAAGCCACCAACCCCGCTTCCCCACACCAA
CCAACAGCCCCACACGAAACAGTCCCAAAATCATGAAGTTCCTCGTCACC
TCTGCCCTGGCATTTCTTGCTCTTGCACCCTTTGCCCTGGCTGTCCCTGT
CACCACGGTGGCTGCCGAGGCCCTGACGTCGCTCAAGACCGCACAGATTA
TTCCGGACGTGATCAGCAGCTTTGTGCCCACGGCTACGCTGACAGTGGAC
TACGGCAGAATGACCCCTGTTAAAATGGGAGAGGAGATGCTGCCCTCAGA
GGTCGCTAAAGAGCCCGTGGTCACTTTCACCGGCACGGATCCCAAGAAGA
TGTACACCCTGGTCATGACGGACCCTGGCGTTCTCGACATTAAGACTCTG
CGTGTCGAGCAGCAGAGTGCGTGGCAGTGGCTGCACTGGATCGTGGTGAA
CGTGCCGGGCGACATGGCAGTCCCCGCGGCTGGCAAGGTCGTCCAGCCCT
ACGGCCCGCCTGCACCGCCGGCTGGCAACCACCGCTATACCTTCCTCCTG
TTTGAGCAAAAGGCTGAGATCAACCCCGCAACCCCTAAGGAGCGCGGCTC
CTTCGACACTCGCGCTTTTGCCGCCGCCAACAGCCTTACCCCCGTGGGTG
GCTTCTACTTCCTGGCCCAGCCCGAGGCGGCTCAGTAA

Synonyms

Publications