NO04G00050.1, NO04G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00050.1
Unique NameNO04G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1727
Alignment locationchr4:25604..28164 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:25604..28164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G00050.1 vs.
Match: CBJ30525.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 104.8 bits (260), Expect = 3.100e-19
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 0 
Query:   67 GGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFVFIFVYYIIR 185
            G   + G      YYS P DR++E++ N+ E +NN  I DL+ QVS LK LTIDIG EVRSQN L+  M        GL+G T+RR+N M+    SRHM +LV FIVF F+ ++YI++
Sbjct:    6 GSQGRGGSSTGGGYYSAPTDRIKETNHNIMEMQNNAHIDDLSDQVSRLKHLTIDIGQEVRSQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFMAIWYILK 123
The following BLAST results are available for this feature:
BLAST of NO04G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ30525.13.100e-1947.46Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00050NO04G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00050.1NO04G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00050.1.cds1NO04G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00050.1.cds2NO04G00050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00050.1.cds3NO04G00050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00050.1.cds4NO04G00050.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00050.1 ID=NO04G00050.1|Name=NO04G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
TGTGTGTCTTTTTTTATCATTTTCGTTGACTTTTTCTGTGCCATTTCATC
TCCATCCACTCCTTTGTGCTTGCTTTTCATTTTCTTTTCCCTGCGTTCTA
CCTATCGTTCAATCCCACTCGACTCTTCTTCTTTCCTTCTCGCTTGTTCT
CTCTCCCTGCCTCCTGACTTTCTTGCCCTCACCTTCTATTTATTCCCTTG
TCTTCGAGCCCATTCCATGTTATTCTTTTCCTTTTCTCCTCTAATTCATC
TAGCCATGGCCCCCTGGCTCTTCCCAATTCTCTTCTTCCCTCTCTTGCTC
TTAATTCCTCTCCACCCGCAGGATTTCTTCTTTCTTCGCTTTTTAGCATC
TAGCTTTATTGCTCGATGCTCTTTTACCAATCCACGCTCGCGATGGCGGA
CTCCTGGATCCCTTGTTAAATGTTGTGTATTTTTTTTATTTCACTCTTCA
CCTGGACGATACCCCGGAGTATCTCAATCCCATGGGAAGAGCAATCAGGT
CTTTTGCATTCCAAAAAATTTCGCTGCCTGTGCGGTTCTGATACATATAT
GCACCCTCTCGACTATTATGAATTTTCGATACGTTCCGATCTGTCCCATC
AATCCCGTCTATTTTCACGCCCAAAATAATTCCAGGGTGGGGAACGCATG
TGATATGTTTGGAAGCGAGGACTAGTCGAGAGAACGAAGAGAGCTGAGCA
TTGATGCGGAGGGGTGAAGCGTAAGTGGTTGCAGTGTGCATACGCTTGTC
AAAACACCAGAACAAGGCGAGATGGAAGACATAACTCGGCGTTGTGATTC
CGAGTAATTTCGAGCCCCCCTATGCGGGTAGACGGCTGCTTCCTTTCAAG
TACTGTATATAAGCCCGAGTACAAGGTCTTTTTGTGCCCAAAAGAGGAAA
GATGGCGTGAAGGGACGCGCTTTTTGTGACAAAAGATGGTTTGGGGAGCA
CAAGCGGCCTTGGCGGTAGCGGCGTCAGGAAAACGGTCAGAGATGGTGTT
GACGCTTCTCTCACCGTCGCCCTCTACACGCACAGTGGCGCCTCCACCGC
CGCACATGAGAAGACGGCCAGAGGACAACTACAGCAGTGGGCACATGCCA
AGTAAGAGTAACAGCAGCCGGGGCGCGTACGGTGGTGGAATGCCGCAAGC
CGGGCCCGGCAGACCGTCCAACTACTATTCAATGCCAGAGGACCGAGTCC
GTGAGTCAAGCCGGAATATGTTTGAGGATGAGAATAACAGGCGCATCGCA
GACTTGGCCGGGCAAGTCTCCATGCTCAAGGAGCTGACAATTGACATAGG
CACGGAAGTCCGCTCCCAAAATACTCTCCTCGATGACATGGGCAACGGGT
TTTCACGCACAGATGGGTTGATGGGCTCCACCATGCGGCGGCTGAACAAG
ATGCTCACCACCTCCTCAAGCCGGCACATGCTCTGGCTTGTGGTGTTTAT
TGTCTTTGTCTTCATCTTCGTCTACTACATCATTAGGCACAAGGGCTGAA
GGGAAGGCAGGAGGAAAGGAGGGATGGAGAAGGAATTGAGGGAAGGAAAA
TGATGTGTCAGGAAAGGAATGAGATGGATCGGACAAAAGATTACGGTGGA
AATGGCACAATTTAAAATTTGTTTATACGCACGTGCGAATGAGATAGGGA
AACTGGAAATGAGAAGACGTTGGCGATGATGTGGAGAAAAAGAAATACCA
CCAAAATAGTTTTTAATTTGTGGGAGT
back to top

protein sequence of NO04G00050.1

>NO04G00050.1-protein ID=NO04G00050.1-protein|Name=NO04G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MVWGAQAALAVAASGKRSEMVLTLLSPSPSTRTVAPPPPHMRRRPEDNYS
SGHMPSKSNSSRGAYGGGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDEN
NRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTM
RRLNKMLTTSSSRHMLWLVVFIVFVFIFVYYIIRHKG*
back to top

mRNA from alignment at chr4:25604..28164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00050.1 ID=NO04G00050.1|Name=NO04G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2561bp|location=Sequence derived from alignment at chr4:25604..28164- (Nannochloropsis oceanica)
TGTGTGTCTTTTTTTATCATTTTCGTTGACTTTTTCTGTGCCATTTCATC
TCCATCCACTCCTTTGTGCTTGCTTTTCATTTTCTTTTCCCTGCGTTCTA
CCTATCGTTCAATCCCACTCGACTCTTCTTCTTTCCTTCTCGCTTGTTCT
CTCTCCCTGCCTCCTGACTTTCTTGCCCTCACCTTCTATTTATTCCCTTG
TCTTCGAGCCCATTCCATGTTATTCTTTTCCTTTTCTCCTCTAATTCATC
TAGCCATGGCCCCCTGGCTCTTCCCAATTCTCTTCTTCCCTCTCTTGCTC
TTAATTCCTCTCCACCCGCAGGATTTCTTCTTTCTTCGCTTTTTAGCATC
TAGCTTTATTGCTCGATGCTCTTTTACCAATCCACGCTCGCGATGGCGGA
CTCCTGGATCCCTTGTTAAATGTTGTGTATTTTTTTTATTTCACTCTTCA
CCTGGACGATACCCCGGAGTATCTCAATCCCATGGGAAGAGCAATCAGGT
CTTTTGCATTCCAAAAAATTTCGCTGCCTGTGCGGTTCTGATACATATAT
GCACCCTCTCGACTATTATGAATTTTCGATACGTTCCGATCTGTCCCATC
AATCCCGTCTATTTTCACGCCCAAAATAATTCCAGGGTGGGGAACGCATG
TGATATGTTTGGAAGCGAGGACTAGTCGAGAGAACGAAGAGAGCTGAGCA
TTGATGCGGAGGGGTGAAGCGTAAGTGGTTGCAGTGTGCATACGCTTGTC
AAAACACCAGAACAAGGCGAGATGGAAGACATAACTCGGCGTTGTGATTC
CGAGTAATTTCGAGCCCCCCTATGCGGGTAGACGGCTGCTTCCTTTCAAG
TACTGTATATAAGCCCGAGTACAAGGTCTTTTTGTGCCCAAAAGAGGAAA
GATGGCGTGAAGGGACGCGCTTTTTGTGACAAAAGATGGTTTGGGGAGCA
CAAGCGGCCTTGGCGGTAGCGGCGTCAGGAAAACGGTCAGAGATGGTGTT
GACGCTTCTCTCACCGTCGCCCTCTACACGCACAGTGGCGCCTCCACCGC
CGCACATGAGAAGACGGCCAGAGGACAACTACAGCAGTGGGCACATGCCA
AGTAAGAGTAACAGCAGCCGGGGCGCGTACGGTGGTGGAATGCCGCAAGC
CGGGCCCGGCAGACCGGTACGTGGGGAGATAGATGCCTGCCCGTGTAGGG
CTGGCTATAGGCACTGGCACGTGTGGTTGGAGGGGATTGGAAACTATTGG
CATCGGCTCCCAGTGTGTCGTGTGTGCTTCTTTTCTCATGCATACACGGC
ACGGCAGCATCATCACGCTTTTACTCTGTCTGCTCACGCATGCCCCCTTC
CCATTCCACCCCTCCAGTCCAACTACTATTCAATGCCAGAGGACCGAGTC
CGTGAGTCAAGCCGGAATATGTTTGAGGATGAGAATAACAGGCGCATCGC
AGACTTGGCCGGGCAAGTCTCCATGCTCAAGGAGGTACGTCATGAACTCA
AGGAGAGAGGAAGTGCAGGAGTAGGGATGGCATGGTGCTGGGCAAATGTT
TAGCTAGTCAAGGTTGGTAGCTACTTGCAAGTGATTGAGATGTGTGATGA
GCAAGAAGGGGGCGCAGGTGGGAAGCAATCTGGGCGGGATGCTGATGGAA
CGGCGCGTGGATGAAAGGAGAAATTTTGTAAGCAATGAAAAAGCTTACAG
GAGCTTGAGTGTAGTGAGGCCTTCAGCGGAGAGCGGTGTGTCCAAAATGC
AGATTGTATACATGAAAGAGAGAAAAAGGAGTGGTAAAATGTATCGTCGA
AGTGATACCAAGGCTTTTTTTAATGGGATGCAACGAAGTGTCTACAAACA
CGCTGAAGTCGTCTAAATTATTTTCTATCCCTGATTTTCTCCACCATCCT
CTACCTCATATCCCACGCCGCAGCTGACAATTGACATAGGCACGGAAGTC
CGCTCCCAAAATACTCTCCTCGATGACATGGTGAGCACATTTTTGGTTAG
GTAGACAAGGAAAGAAGAGGAGGGAGAATGGGGGAATATTCAGGTTTAAA
AGGAGAAAGGACCGTGTCTGTCGCACACTGGCGAAATTCCGTTGACCAAA
ACTCTGTGGAATCGATTAATTGCTATCCGCGACCGTGACACTCCACCCTT
CTCTCTCATCGTATCAACGCGCAGGGCAACGGGTTTTCACGCACAGATGG
GTTGATGGGCTCCACCATGCGGCGGCTGAACAAGATGCTCACCACCTCCT
CAAGCCGGCACATGCTCTGGCTTGTGGTGTTTATTGTCTTTGTCTTCATC
TTCGTCTACTACATCATTAGGCACAAGGGCTGAAGGGAAGGCAGGAGGAA
AGGAGGGATGGAGAAGGAATTGAGGGAAGGAAAATGATGTGTCAGGAAAG
GAATGAGATGGATCGGACAAAAGATTACGGTGGAAATGGCACAATTTAAA
ATTTGTTTATACGCACGTGCGAATGAGATAGGGAAACTGGAAATGAGAAG
ACGTTGGCGATGATGTGGAGAAAAAGAAATACCACCAAAATAGTTTTTAA
TTTGTGGGAGT
back to top

Coding sequence (CDS) from alignment at chr4:25604..28164-

>NO04G00050.1 ID=NO04G00050.1|Name=NO04G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=564bp|location=Sequence derived from alignment at chr4:25604..28164- (Nannochloropsis oceanica)
ATGGTTTGGGGAGCACAAGCGGCCTTGGCGGTAGCGGCGTCAGGAAAACG
GTCAGAGATGGTGTTGACGCTTCTCTCACCGTCGCCCTCTACACGCACAG
TGGCGCCTCCACCGCCGCACATGAGAAGACGGCCAGAGGACAACTACAGC
AGTGGGCACATGCCAAGTAAGAGTAACAGCAGCCGGGGCGCGTACGGTGG
TGGAATGCCGCAAGCCGGGCCCGGCAGACCGTCCAACTACTATTCAATGC
CAGAGGACCGAGTCCGTGAGTCAAGCCGGAATATGTTTGAGGATGAGAAT
AACAGGCGCATCGCAGACTTGGCCGGGCAAGTCTCCATGCTCAAGGAGCT
GACAATTGACATAGGCACGGAAGTCCGCTCCCAAAATACTCTCCTCGATG
ACATGGGCAACGGGTTTTCACGCACAGATGGGTTGATGGGCTCCACCATG
CGGCGGCTGAACAAGATGCTCACCACCTCCTCAAGCCGGCACATGCTCTG
GCTTGTGGTGTTTATTGTCTTTGTCTTCATCTTCGTCTACTACATCATTA
GGCACAAGGGCTGA
back to top
Synonyms
Publications