NO04G00030.1, NO04G00030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00030.1
Unique NameNO04G00030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2290
Alignment locationchr4:16066..18355 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:16066..18355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO04G00030.1 vs.
Match: EWM28406.1 (ubiquitin carboxyl-terminal hydrolase 3 [Nannochloropsis gaditana])

HSP 1 Score: 259.6 bits (662), Expect = 1.400e-65
Identity = 154/321 (47.98%), Postives = 195/321 (60.75%), Query Frame = 0 
Query:   30 VDVGGEVEPRQTCPHLHLASHLHISPDDLASSVTPGRCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAERE------ERWRDVVTGESSGEGRGGRRL-NTATGMPFPNGGGRSRQEE---GKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTPDKTALLAGIQTRFQTGLVLPNGMDDAEEEKEGVADVKPTPAQCVFEHLKACSLLAKTVRVGSVAEAQARGDLRSVLVLSEGEADGEEEGEIIEMGMGGEIMVMPSEKEEVREALAAGKELVVVRVGLGGIAAGPQDVEVMLRQMLEA 341
            +D GGEVEP+QTCPH+H +SHL ++PDDL  S+  G+C  C S +EPWVCLGC  AVHCSRYVNADAEAHFFASLTA  E      ER  D  TG         + L N   G+           E     +GHGL LSLSDLSVWCY+C SYVKHDRL+P LVRAEALKF+TP+K  LL G QTRF+TG+V+P  +       E +   K TP Q +F+HLK+ SLLAK +    + EA+A   L+SVLVL  G    +   +  E   G +  V    ++ +++A+    EL VVRVG   +  G + +E  LR ML +
Sbjct:   10 LDAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCN-AVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSL------TEDIPGSKSTPIQELFDHLKSRSLLAKMIPFHDLNEARACEGLQSVLVLERGSQASDSISDRTE--AGSKNSVARKLRDRIQKAILEKDELTVVRVGRKEVEEGVESLESCLRLMLSS 321
The following BLAST results are available for this feature:
BLAST of NO04G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28406.11.400e-6547.98ubiquitin carboxyl-terminal hydrolase 3 [Nannochlo... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00030NO04G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00030.1NO04G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00030.1.cds1NO04G00030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00030.1 ID=NO04G00030.1|Name=NO04G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp
TCACGCACAAAATCAAACAGGCCCCCTCCTTGACATCCGATCAGAACCAT
TAAAAAAGCACGGTCAAAGGAAGCGGTCTGCGCCCGAATCAAATCAACAC
ACACAGGTCATCCGCGTTATGCATCACCAGCACAAGGGTGACAAAGATCA
GCAGCGGGGGTCAGAGCACGACCCTCTCCTTCTTCTGCAGCAAGAAGCTG
CGCTCGTGGACGTGGGTGGGGAGGTGGAGCCCCGCCAAACGTGCCCGCAC
CTCCACCTTGCTTCGCATCTTCACATCTCCCCGGACGACCTTGCCTCCTC
GGTCACCCCAGGCCGCTGCATGACTTGTGGGAGCGAGGTCGAACCTTGGG
TTTGTCTGGGGTGCAAGTGCGCCGTTCACTGCTCACGGTACGTGAATGCT
GATGCGGAGGCACATTTCTTTGCTTCCCTGACGGCGGAGCGTGAGGAGAG
ATGGAGGGATGTGGTAACCGGGGAAAGCAGTGGGGAAGGCAGGGGCGGAA
GGCGGCTCAATACTGCCACTGGCATGCCCTTTCCGAACGGTGGAGGGAGG
TCAAGGCAGGAGGAAGGAAAAGGGCACGGCCTGGTGTTGTCGTTGAGCGA
CTTGTCCGTGTGGTGCTACCTTTGCAGCAGCTACGTCAAGCATGACCGAC
TTGTTCCTTTCTTGGTGCGGGCCGAGGCCCTGAAGTTTAACACTCCCGAC
AAGACAGCGCTGCTGGCAGGAATTCAGACGCGCTTTCAGACGGGGCTCGT
GCTGCCGAACGGAATGGACGACGCCGAAGAGGAGAAGGAGGGTGTGGCGG
ATGTTAAACCTACGCCTGCCCAATGTGTTTTTGAGCACCTCAAGGCTTGC
AGTCTCCTGGCTAAAACCGTACGAGTAGGGTCTGTGGCCGAGGCTCAGGC
TCGCGGCGACCTGCGGAGCGTGTTGGTGTTAAGCGAGGGCGAGGCTGATG
GGGAGGAGGAGGGAGAAATAATAGAGATGGGAATGGGAGGGGAAATCATG
GTAATGCCGTCAGAGAAGGAAGAGGTACGGGAGGCCTTGGCAGCAGGCAA
GGAGCTGGTGGTTGTGCGGGTAGGTTTGGGTGGGATAGCTGCAGGGCCTC
AAGACGTGGAAGTGATGCTGCGGCAAATGCTTGAGGCGACCTGAGAAAGG
ACGGAAATCCGATGAGATTATATCTTTTCGATATGCGCCTCCCTTCCCAT
TTCTCCCACTATATTATGGCGTGGCACCAACATTTATGCTCGATTAAGAA
GTCAGGCGGGTGACCGCCGTTTCTTCCCACTTTTTTGCGTAACCGTTAGA
GCACGAAGCGACTCGCTCGAGAAAACACATAGGGTTGCGTCGATGGTCGT
AACCCACATCAGCAGTAGGTGGAGATCCTATCGCCCTCCATCCGATGGTG
ATATTGTGGTTGCATGAAAGTCCTTAGAGGTCATGGTCTTATGCGAGGGG
CAAGCAACAAGCGAGGCCGTTCTCATTCCAAACTTTTGCTCTCTCGTCTC
ACTCTTCCCACCTGGCGATTCAAGCGCCTACAAAAACGCGTCACCTCGAT
GATTCGGGGGCTGTACCAAATATGGAACCAGTCATGGACATTCACAGAGG
CATCGTGAGGATTTCGAGGAGCCCGTTGTGGCACTTGTTTGCGAAGGGGC
GGCAAGGCGAAGGGAATGAGTCTCCGTGCTTGAACACCTTTCGCGTTCCC
TTCTCACCCCATGGATGTGATTGAGCAGTATCCGCGTTGTAATTTGATCG
CGTCTGTGGCCATTACATGTCACTTAAAGAAAATATGCCGAGAGACTATC
AATATGTGGCACGGCAGGTGTATGGGCCACGAGCAGTTGGTACTTGGAGG
GGACCTCGGCTCAGAGAGGGCATGTATGATAACGTACGCTAGCCATCGGC
AAAGTATTGGAGCTTCAATATCCGATGTACCAGTCGGATGGGGCATGAAG
CCGAGTCATCTATGACTGGCCCCGATGAAGTTTTATATTTGTCCAATGCC
CAACCTTGCCTGCTTGCTGGCCGTCCAGACTAAGAAAAGGCCTGGTCGCC
ATGCCACGAGACAGCCAAGTACGCCAAATGCAGCAGTAATATCTATGCTT
GTAAATACTATGATGCCATTAAAATCTTGCGCTTGGCCAGGTCTTGGTCT
TACTGCGGCTGCTGCAGCCCCCATGAGCTTCGTTTCGACGCCGCCTTACA
ACGACAGTGTGGAACTCGGTCCTACTTAGGGGGATGAAATAATCAAGAGA
AGGATTGCAACGAGCCAGTAAAAAAAGAAAATATGCAAAA
back to top

protein sequence of NO04G00030.1

>NO04G00030.1-protein ID=NO04G00030.1-protein|Name=NO04G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MHHQHKGDKDQQRGSEHDPLLLLQQEAALVDVGGEVEPRQTCPHLHLASH
LHISPDDLASSVTPGRCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHF
FASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEG
KGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTPDKTALLA
GIQTRFQTGLVLPNGMDDAEEEKEGVADVKPTPAQCVFEHLKACSLLAKT
VRVGSVAEAQARGDLRSVLVLSEGEADGEEEGEIIEMGMGGEIMVMPSEK
EEVREALAAGKELVVVRVGLGGIAAGPQDVEVMLRQMLEAT*
back to top

mRNA from alignment at chr4:16066..18355-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00030.1 ID=NO04G00030.1|Name=NO04G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp|location=Sequence derived from alignment at chr4:16066..18355- (Nannochloropsis oceanica)
TCACGCACAAAATCAAACAGGCCCCCTCCTTGACATCCGATCAGAACCAT
TAAAAAAGCACGGTCAAAGGAAGCGGTCTGCGCCCGAATCAAATCAACAC
ACACAGGTCATCCGCGTTATGCATCACCAGCACAAGGGTGACAAAGATCA
GCAGCGGGGGTCAGAGCACGACCCTCTCCTTCTTCTGCAGCAAGAAGCTG
CGCTCGTGGACGTGGGTGGGGAGGTGGAGCCCCGCCAAACGTGCCCGCAC
CTCCACCTTGCTTCGCATCTTCACATCTCCCCGGACGACCTTGCCTCCTC
GGTCACCCCAGGCCGCTGCATGACTTGTGGGAGCGAGGTCGAACCTTGGG
TTTGTCTGGGGTGCAAGTGCGCCGTTCACTGCTCACGGTACGTGAATGCT
GATGCGGAGGCACATTTCTTTGCTTCCCTGACGGCGGAGCGTGAGGAGAG
ATGGAGGGATGTGGTAACCGGGGAAAGCAGTGGGGAAGGCAGGGGCGGAA
GGCGGCTCAATACTGCCACTGGCATGCCCTTTCCGAACGGTGGAGGGAGG
TCAAGGCAGGAGGAAGGAAAAGGGCACGGCCTGGTGTTGTCGTTGAGCGA
CTTGTCCGTGTGGTGCTACCTTTGCAGCAGCTACGTCAAGCATGACCGAC
TTGTTCCTTTCTTGGTGCGGGCCGAGGCCCTGAAGTTTAACACTCCCGAC
AAGACAGCGCTGCTGGCAGGAATTCAGACGCGCTTTCAGACGGGGCTCGT
GCTGCCGAACGGAATGGACGACGCCGAAGAGGAGAAGGAGGGTGTGGCGG
ATGTTAAACCTACGCCTGCCCAATGTGTTTTTGAGCACCTCAAGGCTTGC
AGTCTCCTGGCTAAAACCGTACGAGTAGGGTCTGTGGCCGAGGCTCAGGC
TCGCGGCGACCTGCGGAGCGTGTTGGTGTTAAGCGAGGGCGAGGCTGATG
GGGAGGAGGAGGGAGAAATAATAGAGATGGGAATGGGAGGGGAAATCATG
GTAATGCCGTCAGAGAAGGAAGAGGTACGGGAGGCCTTGGCAGCAGGCAA
GGAGCTGGTGGTTGTGCGGGTAGGTTTGGGTGGGATAGCTGCAGGGCCTC
AAGACGTGGAAGTGATGCTGCGGCAAATGCTTGAGGCGACCTGAGAAAGG
ACGGAAATCCGATGAGATTATATCTTTTCGATATGCGCCTCCCTTCCCAT
TTCTCCCACTATATTATGGCGTGGCACCAACATTTATGCTCGATTAAGAA
GTCAGGCGGGTGACCGCCGTTTCTTCCCACTTTTTTGCGTAACCGTTAGA
GCACGAAGCGACTCGCTCGAGAAAACACATAGGGTTGCGTCGATGGTCGT
AACCCACATCAGCAGTAGGTGGAGATCCTATCGCCCTCCATCCGATGGTG
ATATTGTGGTTGCATGAAAGTCCTTAGAGGTCATGGTCTTATGCGAGGGG
CAAGCAACAAGCGAGGCCGTTCTCATTCCAAACTTTTGCTCTCTCGTCTC
ACTCTTCCCACCTGGCGATTCAAGCGCCTACAAAAACGCGTCACCTCGAT
GATTCGGGGGCTGTACCAAATATGGAACCAGTCATGGACATTCACAGAGG
CATCGTGAGGATTTCGAGGAGCCCGTTGTGGCACTTGTTTGCGAAGGGGC
GGCAAGGCGAAGGGAATGAGTCTCCGTGCTTGAACACCTTTCGCGTTCCC
TTCTCACCCCATGGATGTGATTGAGCAGTATCCGCGTTGTAATTTGATCG
CGTCTGTGGCCATTACATGTCACTTAAAGAAAATATGCCGAGAGACTATC
AATATGTGGCACGGCAGGTGTATGGGCCACGAGCAGTTGGTACTTGGAGG
GGACCTCGGCTCAGAGAGGGCATGTATGATAACGTACGCTAGCCATCGGC
AAAGTATTGGAGCTTCAATATCCGATGTACCAGTCGGATGGGGCATGAAG
CCGAGTCATCTATGACTGGCCCCGATGAAGTTTTATATTTGTCCAATGCC
CAACCTTGCCTGCTTGCTGGCCGTCCAGACTAAGAAAAGGCCTGGTCGCC
ATGCCACGAGACAGCCAAGTACGCCAAATGCAGCAGTAATATCTATGCTT
GTAAATACTATGATGCCATTAAAATCTTGCGCTTGGCCAGGTCTTGGTCT
TACTGCGGCTGCTGCAGCCCCCATGAGCTTCGTTTCGACGCCGCCTTACA
ACGACAGTGTGGAACTCGGTCCTACTTAGGGGGATGAAATAATCAAGAGA
AGGATTGCAACGAGCCAGTAAAAAAAGAAAATATGCAAAA
back to top

Coding sequence (CDS) from alignment at chr4:16066..18355-

>NO04G00030.1 ID=NO04G00030.1|Name=NO04G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr4:16066..18355- (Nannochloropsis oceanica)
ATGCATCACCAGCACAAGGGTGACAAAGATCAGCAGCGGGGGTCAGAGCA
CGACCCTCTCCTTCTTCTGCAGCAAGAAGCTGCGCTCGTGGACGTGGGTG
GGGAGGTGGAGCCCCGCCAAACGTGCCCGCACCTCCACCTTGCTTCGCAT
CTTCACATCTCCCCGGACGACCTTGCCTCCTCGGTCACCCCAGGCCGCTG
CATGACTTGTGGGAGCGAGGTCGAACCTTGGGTTTGTCTGGGGTGCAAGT
GCGCCGTTCACTGCTCACGGTACGTGAATGCTGATGCGGAGGCACATTTC
TTTGCTTCCCTGACGGCGGAGCGTGAGGAGAGATGGAGGGATGTGGTAAC
CGGGGAAAGCAGTGGGGAAGGCAGGGGCGGAAGGCGGCTCAATACTGCCA
CTGGCATGCCCTTTCCGAACGGTGGAGGGAGGTCAAGGCAGGAGGAAGGA
AAAGGGCACGGCCTGGTGTTGTCGTTGAGCGACTTGTCCGTGTGGTGCTA
CCTTTGCAGCAGCTACGTCAAGCATGACCGACTTGTTCCTTTCTTGGTGC
GGGCCGAGGCCCTGAAGTTTAACACTCCCGACAAGACAGCGCTGCTGGCA
GGAATTCAGACGCGCTTTCAGACGGGGCTCGTGCTGCCGAACGGAATGGA
CGACGCCGAAGAGGAGAAGGAGGGTGTGGCGGATGTTAAACCTACGCCTG
CCCAATGTGTTTTTGAGCACCTCAAGGCTTGCAGTCTCCTGGCTAAAACC
GTACGAGTAGGGTCTGTGGCCGAGGCTCAGGCTCGCGGCGACCTGCGGAG
CGTGTTGGTGTTAAGCGAGGGCGAGGCTGATGGGGAGGAGGAGGGAGAAA
TAATAGAGATGGGAATGGGAGGGGAAATCATGGTAATGCCGTCAGAGAAG
GAAGAGGTACGGGAGGCCTTGGCAGCAGGCAAGGAGCTGGTGGTTGTGCG
GGTAGGTTTGGGTGGGATAGCTGCAGGGCCTCAAGACGTGGAAGTGATGC
TGCGGCAAATGCTTGAGGCGACCTGA
back to top
Synonyms
Publications