NO04G00010.1, NO04G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00010.1
Unique NameNO04G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length300
Alignment locationchr4:1159..1818 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1159..1818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00010NO04G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00010.1NO04G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00010.1.cds1NO04G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00010.1.cds2NO04G00010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00010.1 ID=NO04G00010.1|Name=NO04G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=300bp
ATGGTGGGGGAGGCGGTGGAGGTGTTGGCGGGGGTGTTGGTGGAGATGTT
GGTGGTGGCGGTGGAGGCGGTGGAGGCGGTGGGGGTGGTGGAGGTGTTGG
CGGGGGTGTTGGTGGAGGCGGTGGAGGTGTTGGCGGTGGTGGAGGCGGTG
GAGGCGGTGGAGGCGGTGGGGGTGTTGTACCACGCGGCGGATACGAAGGG
GCCACTCGCAACCAAAGAATACGCCTGTTTATCTGTCATCGTAATGGACG
TTCCTGTGACGTTCACCGTAATCACGTCGCAGTCGGGTTCGGGAAGCTAA
back to top

protein sequence of NO04G00010.1

>NO04G00010.1-protein ID=NO04G00010.1-protein|Name=NO04G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MVGEAVEVLAGVLVEMLVVAVEAVEAVGVVEVLAGVLVEAVEVLAVVEAV
EAVEAVGVLYHAADTKGPLATKEYACLSVIVMDVPVTFTVITSQSGSGS*
back to top

mRNA from alignment at chr4:1159..1818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00010.1 ID=NO04G00010.1|Name=NO04G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=660bp|location=Sequence derived from alignment at chr4:1159..1818- (Nannochloropsis oceanica)
ATGGTGGGGGAGGCGGTGGAGGTGTTGGCGGGGGTGTTGGTGGAGATGTT
GGTGGTGGCGGTGGAGGCGGTGGAGGCGGTGGGGGTGGTGGAGGTGTTGG
CGGGGGTGTTGGTGGAGGCGGTGGAGGTGTTGGCGGTGGTGGAGGCGGTG
GAGGCGGTGGAGGCGGTGGGGGTGTTGGTACAGAAAGTTACTTAAATAAC
TTTCTGTATAGTCCGTACGGATTACGTGTATTGTGTATTGTTGTTGCCAC
GCGCTCCGCGCGCGCTTTATTTGAACAGCTATATACGGTGTGTCTATCAG
TATTCTTTTTACCATATTTACTCACATTCTTGAGGGGGTGTCAGGCCTAT
GCACTTAGAGGCATTTGCCAGCTGAGGTAGGCACGCATGACCGTCTCTTA
ATTTGCTCCCACGTCGACCACCAAGTGTCTCACAACACAAGGGCCTTTTC
TTGAAACTTCCAATGCACGGCAGAGTACAGTGCTCCATTCTCCACGAAGG
ATGCCCCCCATAAGTCCCCTTATCATTATTTTGACAGTACCACGCGGCGG
ATACGAAGGGGCCACTCGCAACCAAAGAATACGCCTGTTTATCTGTCATC
GTAATGGACGTTCCTGTGACGTTCACCGTAATCACGTCGCAGTCGGGTTC
GGGAAGCTAA
back to top

Coding sequence (CDS) from alignment at chr4:1159..1818-

>NO04G00010.1 ID=NO04G00010.1|Name=NO04G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at chr4:1159..1818- (Nannochloropsis oceanica)
ATGGTGGGGGAGGCGGTGGAGGTGTTGGCGGGGGTGTTGGTGGAGATGTT
GGTGGTGGCGGTGGAGGCGGTGGAGGCGGTGGGGGTGGTGGAGGTGTTGG
CGGGGGTGTTGGTGGAGGCGGTGGAGGTGTTGGCGGTGGTGGAGGCGGTG
GAGGCGGTGGAGGCGGTGGGGGTGTTGTACCACGCGGCGGATACGAAGGG
GCCACTCGCAACCAAAGAATACGCCTGTTTATCTGTCATCGTAATGGACG
TTCCTGTGACGTTCACCGTAATCACGTCGCAGTCGGGTTCGGGAAGCTAA
back to top
Synonyms
Publications