NO03G05780.1, NO03G05780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05780.1
Unique NameNO03G05780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length816
Alignment locationchr3:1657752..1658567 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1657752..1658567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05780.1 vs.
Match: EWM30052.1 (hypothetical protein Naga_100225g2 [Nannochloropsis gaditana])

HSP 1 Score: 262.3 bits (669), Expect = 1.700e-66
Identity = 140/214 (65.42%), Postives = 162/214 (75.70%), Query Frame = 0 
Query:   52 SSLGATAAALVGLAPASNAAS------PPSSDTRIGLEGGPTRREKSRPALLEALVYLPKGVNYWGELLAGPDEEEQEDDGSMSSSAGTGTEALFLTASFQGKLVLGARVPMEGMIFPFLAQFYEGNILGGDGGWQEAKAQDLVVRARVCATGEYPPCGTPLLKAASISKFLPEIRDPNNPMSEEIIARNVRIGASLMLQPVNEATTLERMQMV 260
            +SL  T  AL+GL P  + AS      PPS    +  EG PT REK RP LLEALVYLPKGVNYWG+LL  P+ +    D    + AGTGTEALFLTASFQ KL+LGARVPM+G++FPFLAQFYE NILGG   W+  K++DLVVRARVC TG YPPC  PLLKAAS+SKF PE+RDPN P S E+IARNVRIGASLMLQPV E+TTLERM+++
Sbjct:   57 ASLAVTPVALLGLMPPVSVASSTTRTAPPSLPREV--EGRPTLREKGRPPLLEALVYLPKGVNYWGQLL--PESKNSAPDSI--AIAGTGTEALFLTASFQNKLILGARVPMQGIMFPFLAQFYEDNILGGKNIWEGVKSKDLVVRARVCPTGSYPPCNVPLLKAASLSKFFPEVRDPNTPESAEVIARNVRIGASLMLQPVTESTTLERMRVM 264
The following BLAST results are available for this feature:
BLAST of NO03G05780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30052.11.700e-6665.42hypothetical protein Naga_100225g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05780NO03G05780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05780.1NO03G05780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05780.1.cds1NO03G05780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05780.1 ID=NO03G05780.1|Name=NO03G05780.1|organism=Nannochloropsis oceanica|type=mRNA|length=816bp
ATGCGCAACGACCTCCTTCCCTGCTTGACGCTTCTGCTTCTCTCGATTAT
TATCACCACCGTCTTGGCCTACTCTCCACCGCAAGGTCCATTCCGCGCTC
ATCTTTTATCTCTTTCGCCGGTCTCATATACTCGCGCTTCGTTTTTGACC
GATTCATCTCTGGGTGCGACCGCTGCTGCCTTGGTAGGGCTTGCTCCCGC
CTCGAACGCAGCTTCCCCTCCCTCCTCCGATACGCGGATAGGTCTAGAAG
GCGGGCCCACGAGGCGTGAGAAGAGCCGGCCTGCCTTGCTGGAGGCTTTA
GTATACCTACCCAAAGGCGTGAACTATTGGGGCGAGCTCTTGGCTGGCCC
CGACGAGGAGGAGCAGGAGGATGATGGCTCTATGTCTAGCAGCGCTGGCA
CTGGCACGGAAGCCCTCTTTCTGACGGCCTCCTTCCAAGGCAAACTCGTG
CTGGGTGCCCGAGTGCCGATGGAAGGGATGATATTCCCTTTCCTGGCACA
GTTCTATGAAGGCAACATCCTGGGCGGCGATGGCGGGTGGCAGGAGGCCA
AGGCCCAGGACTTGGTGGTGCGTGCCCGTGTATGTGCCACGGGCGAGTAT
CCTCCCTGCGGCACGCCCCTTCTCAAGGCGGCCTCCATTTCTAAGTTCCT
GCCCGAGATTCGCGATCCCAATAATCCTATGAGCGAGGAGATTATTGCTC
GGAACGTTCGCATTGGCGCGAGTTTGATGCTGCAGCCTGTGAATGAGGCC
ACGACGCTGGAGAGGATGCAGATGGTCAAAGACAGCACGGGGGATGAGGG
CGGCGGTAGAAGATGA
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protein sequence of NO03G05780.1

>NO03G05780.1-protein ID=NO03G05780.1-protein|Name=NO03G05780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MRNDLLPCLTLLLLSIIITTVLAYSPPQGPFRAHLLSLSPVSYTRASFLT
DSSLGATAAALVGLAPASNAASPPSSDTRIGLEGGPTRREKSRPALLEAL
VYLPKGVNYWGELLAGPDEEEQEDDGSMSSSAGTGTEALFLTASFQGKLV
LGARVPMEGMIFPFLAQFYEGNILGGDGGWQEAKAQDLVVRARVCATGEY
PPCGTPLLKAASISKFLPEIRDPNNPMSEEIIARNVRIGASLMLQPVNEA
TTLERMQMVKDSTGDEGGGRR*
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mRNA from alignment at chr3:1657752..1658567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05780.1 ID=NO03G05780.1|Name=NO03G05780.1|organism=Nannochloropsis oceanica|type=mRNA|length=816bp|location=Sequence derived from alignment at chr3:1657752..1658567- (Nannochloropsis oceanica)
ATGCGCAACGACCTCCTTCCCTGCTTGACGCTTCTGCTTCTCTCGATTAT
TATCACCACCGTCTTGGCCTACTCTCCACCGCAAGGTCCATTCCGCGCTC
ATCTTTTATCTCTTTCGCCGGTCTCATATACTCGCGCTTCGTTTTTGACC
GATTCATCTCTGGGTGCGACCGCTGCTGCCTTGGTAGGGCTTGCTCCCGC
CTCGAACGCAGCTTCCCCTCCCTCCTCCGATACGCGGATAGGTCTAGAAG
GCGGGCCCACGAGGCGTGAGAAGAGCCGGCCTGCCTTGCTGGAGGCTTTA
GTATACCTACCCAAAGGCGTGAACTATTGGGGCGAGCTCTTGGCTGGCCC
CGACGAGGAGGAGCAGGAGGATGATGGCTCTATGTCTAGCAGCGCTGGCA
CTGGCACGGAAGCCCTCTTTCTGACGGCCTCCTTCCAAGGCAAACTCGTG
CTGGGTGCCCGAGTGCCGATGGAAGGGATGATATTCCCTTTCCTGGCACA
GTTCTATGAAGGCAACATCCTGGGCGGCGATGGCGGGTGGCAGGAGGCCA
AGGCCCAGGACTTGGTGGTGCGTGCCCGTGTATGTGCCACGGGCGAGTAT
CCTCCCTGCGGCACGCCCCTTCTCAAGGCGGCCTCCATTTCTAAGTTCCT
GCCCGAGATTCGCGATCCCAATAATCCTATGAGCGAGGAGATTATTGCTC
GGAACGTTCGCATTGGCGCGAGTTTGATGCTGCAGCCTGTGAATGAGGCC
ACGACGCTGGAGAGGATGCAGATGGTCAAAGACAGCACGGGGGATGAGGG
CGGCGGTAGAAGATGA
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Coding sequence (CDS) from alignment at chr3:1657752..1658567-

>NO03G05780.1 ID=NO03G05780.1|Name=NO03G05780.1|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at chr3:1657752..1658567- (Nannochloropsis oceanica)
ATGCGCAACGACCTCCTTCCCTGCTTGACGCTTCTGCTTCTCTCGATTAT
TATCACCACCGTCTTGGCCTACTCTCCACCGCAAGGTCCATTCCGCGCTC
ATCTTTTATCTCTTTCGCCGGTCTCATATACTCGCGCTTCGTTTTTGACC
GATTCATCTCTGGGTGCGACCGCTGCTGCCTTGGTAGGGCTTGCTCCCGC
CTCGAACGCAGCTTCCCCTCCCTCCTCCGATACGCGGATAGGTCTAGAAG
GCGGGCCCACGAGGCGTGAGAAGAGCCGGCCTGCCTTGCTGGAGGCTTTA
GTATACCTACCCAAAGGCGTGAACTATTGGGGCGAGCTCTTGGCTGGCCC
CGACGAGGAGGAGCAGGAGGATGATGGCTCTATGTCTAGCAGCGCTGGCA
CTGGCACGGAAGCCCTCTTTCTGACGGCCTCCTTCCAAGGCAAACTCGTG
CTGGGTGCCCGAGTGCCGATGGAAGGGATGATATTCCCTTTCCTGGCACA
GTTCTATGAAGGCAACATCCTGGGCGGCGATGGCGGGTGGCAGGAGGCCA
AGGCCCAGGACTTGGTGGTGCGTGCCCGTGTATGTGCCACGGGCGAGTAT
CCTCCCTGCGGCACGCCCCTTCTCAAGGCGGCCTCCATTTCTAAGTTCCT
GCCCGAGATTCGCGATCCCAATAATCCTATGAGCGAGGAGATTATTGCTC
GGAACGTTCGCATTGGCGCGAGTTTGATGCTGCAGCCTGTGAATGAGGCC
ACGACGCTGGAGAGGATGCAGATGGTCAAAGACAGCACGGGGGATGAGGG
CGGCGGTAGAAGATGA
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Synonyms
Publications