NO03G05740.1, NO03G05740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05740.1
Unique NameNO03G05740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1633
Alignment locationchr3:1648016..1649648 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1648016..1649648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05740.1 vs.
Match: EWM30055.1 (tocopherol polyprenyltransferase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 570.9 bits (1470), Expect = 3.200e-159
Identity = 298/387 (77.00%), Postives = 336/387 (86.82%), Query Frame = 0 
Query:   14 AAAPCLVLTILLIVVGAPTIHAFIIPSLPPSVIARAYPFHLPRRTTSLPSSSSAFAHSSSPLYSSASAGAIPLEGGLNLPPSKQGGVRDKLDALYRFTRPHTIRGTILASLMGVLRCYIEHPKSFANPLQPLPRALLGLLALLCGNIFIVGINQIYDVDIDKVNKPFLPLAAQRMSGKSAWAVVLAACAGGLAITKSAFSPLIFNMYAAGILAGTLYSVPPFYFKRFPLVAATTIAFVRGFSLNFGVYYAVREALGIPFAWNPIVLFITRFMTVFAAVIAVSKDLPDTEGDRKYDVQTFATRVGVANIARGATAVLFLNYVSAVVQGVVNPSGAFRQWVMVGGHTLLAALLARRYSRLDPKKLSSIKAFYKSIWDLFYLEYVLYPFL 401
            AA   L LT LL+V    T  AF+   +P +  +    F   ++   LP   S  + S   ++SSASAGA PLEGGL++PPSKQGG+RD+LDALYRFTRPHTIRGTILASLMGV RC++EHPK+FANPLQP+PRA+LGLLALLCGN+FIVGINQIYDV+IDKVNKPFLPLAAQRM+GK+AWAVVLAA AGGLAITKS F+PLIFNMYAAGI+AGTLYSVPPFYFKRFPL+AA TIAFVRGFSLNFGVYYAVREALGIPFAWNPIVLFITRFMT+FA VIAVSKDLPDTEGD+KY+V+TFATRVGV N+ARGA  VLFLNY+SA+ QGVVNPSGAFRQWVMVGGHT+LAALL +RY +L+P  L+SIKAFYKSIWDLFYLEY LYPFL
Sbjct:   20 AAPVVLFLTTLLLVNSRST--AFVRSPIPRNPQSPFSNFSGSKKV--LPRYPSDPSSSRIGMHSSASAGAAPLEGGLHVPPSKQGGLRDRLDALYRFTRPHTIRGTILASLMGVFRCFLEHPKAFANPLQPMPRAILGLLALLCGNVFIVGINQIYDVEIDKVNKPFLPLAAQRMTGKAAWAVVLAAGAGGLAITKSFFTPLIFNMYAAGIVAGTLYSVPPFYFKRFPLIAAATIAFVRGFSLNFGVYYAVREALGIPFAWNPIVLFITRFMTIFAGVIAVSKDLPDTEGDKKYNVRTFATRVGVKNMARGAAGVLFLNYLSAIAQGVVNPSGAFRQWVMVGGHTVLAALLIQRYKKLEPDSLASIKAFYKSIWDLFYLEYALYPFL 402
The following BLAST results are available for this feature:
BLAST of NO03G05740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30055.13.200e-15977.00tocopherol polyprenyltransferase-like protein [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05740NO03G05740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05740.1NO03G05740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05740.1.cds1NO03G05740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05740.1 ID=NO03G05740.1|Name=NO03G05740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp
GGACAAGAGTTGCAGCACGAGGGCGAATCCGATCGATAATCATCGTGGTG
ATGACGGCGTGGTCTAAAACATTGAAGCTCTTGCTTTGCATACCACCGCA
CATACGAAAGGGTCCTCCCCCTGTCACAGTGTTTAACCTTACGCACACAT
CTTTATCCACGCGATTTTCCCAACACGCACAAAGGGAGCCGCGCAACACC
GAGCACTCTCCACGCACGACGACGGGCTCTGACTCGCCCTCCTCCTCCTC
CTCCTCAACACCATCAAAGTCATGGCAGTGAGGTGGACGGCAAGGTCGCC
AAGACCGGCAGCTGCAGCACCATGCCTCGTGCTGACCATCCTCCTAATCG
TCGTGGGGGCTCCCACGATCCATGCCTTTATCATCCCCTCCCTTCCCCCT
TCCGTCATCGCCCGGGCCTACCCCTTTCACCTCCCTCGCCGCACTACGAG
TCTACCCTCCTCCTCCTCAGCATTTGCCCATTCCTCCTCGCCCCTCTATT
CAAGCGCCTCGGCCGGTGCCATCCCTTTGGAAGGCGGCCTTAACCTGCCC
CCGTCCAAGCAAGGCGGGGTTCGTGACAAGCTCGATGCCCTCTACCGCTT
CACCCGACCTCACACCATCCGCGGTACCATCCTTGCCTCCCTCATGGGCG
TCCTCCGCTGTTATATCGAGCATCCCAAATCCTTTGCTAATCCGCTCCAG
CCTTTGCCAAGGGCTTTGCTTGGCCTCCTGGCCTTGCTGTGCGGCAACAT
ATTCATCGTGGGCATCAACCAAATTTACGACGTAGACATCGACAAGGTCA
ATAAGCCCTTTCTTCCCCTGGCCGCCCAGCGCATGTCGGGCAAATCTGCA
TGGGCCGTGGTGTTGGCTGCTTGTGCGGGCGGGTTGGCCATTACTAAGTC
TGCTTTTAGCCCCCTCATCTTCAACATGTACGCTGCGGGCATCCTGGCGG
GAACCCTCTACTCCGTGCCGCCCTTCTACTTTAAGCGCTTCCCGCTCGTG
GCAGCAACTACTATCGCCTTTGTGCGTGGCTTTAGTTTGAACTTCGGGGT
GTACTACGCGGTGCGGGAGGCGCTGGGCATCCCGTTCGCCTGGAACCCCA
TAGTGCTCTTCATCACCCGCTTTATGACTGTCTTCGCCGCCGTTATCGCC
GTCTCCAAAGACCTGCCCGACACGGAGGGCGACCGAAAGTATGATGTTCA
AACGTTTGCCACACGGGTGGGCGTCGCAAACATTGCGCGAGGGGCGACGG
CCGTCCTCTTTCTCAACTACGTGTCGGCCGTCGTGCAGGGAGTAGTCAAC
CCAAGCGGCGCCTTCAGGCAGTGGGTGATGGTGGGGGGACACACACTCTT
GGCCGCGCTCTTGGCACGACGGTACTCAAGGCTAGACCCCAAGAAACTGA
GCTCCATCAAGGCCTTCTACAAGAGCATCTGGGATTTGTTTTACCTGGAG
TATGTACTTTACCCTTTCCTGTAGGCTTGCAGCGTAAACGGGAAAGATTT
CAATGCAAATAATGCCAACCGTTTCTTTTTATATTTGGAGCCGTACGTTT
TAAATCTTTGAGCACACGACAGCATGGTACTGGACCCAAAAGCCCACTGC
AAACAAAAAAAAACGTGTGACGACTAGAAGCGT
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protein sequence of NO03G05740.1

>NO03G05740.1-protein ID=NO03G05740.1-protein|Name=NO03G05740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MAVRWTARSPRPAAAAPCLVLTILLIVVGAPTIHAFIIPSLPPSVIARAY
PFHLPRRTTSLPSSSSAFAHSSSPLYSSASAGAIPLEGGLNLPPSKQGGV
RDKLDALYRFTRPHTIRGTILASLMGVLRCYIEHPKSFANPLQPLPRALL
GLLALLCGNIFIVGINQIYDVDIDKVNKPFLPLAAQRMSGKSAWAVVLAA
CAGGLAITKSAFSPLIFNMYAAGILAGTLYSVPPFYFKRFPLVAATTIAF
VRGFSLNFGVYYAVREALGIPFAWNPIVLFITRFMTVFAAVIAVSKDLPD
TEGDRKYDVQTFATRVGVANIARGATAVLFLNYVSAVVQGVVNPSGAFRQ
WVMVGGHTLLAALLARRYSRLDPKKLSSIKAFYKSIWDLFYLEYVLYPFL
*
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mRNA from alignment at chr3:1648016..1649648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05740.1 ID=NO03G05740.1|Name=NO03G05740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp|location=Sequence derived from alignment at chr3:1648016..1649648+ (Nannochloropsis oceanica)
GGACAAGAGTTGCAGCACGAGGGCGAATCCGATCGATAATCATCGTGGTG
ATGACGGCGTGGTCTAAAACATTGAAGCTCTTGCTTTGCATACCACCGCA
CATACGAAAGGGTCCTCCCCCTGTCACAGTGTTTAACCTTACGCACACAT
CTTTATCCACGCGATTTTCCCAACACGCACAAAGGGAGCCGCGCAACACC
GAGCACTCTCCACGCACGACGACGGGCTCTGACTCGCCCTCCTCCTCCTC
CTCCTCAACACCATCAAAGTCATGGCAGTGAGGTGGACGGCAAGGTCGCC
AAGACCGGCAGCTGCAGCACCATGCCTCGTGCTGACCATCCTCCTAATCG
TCGTGGGGGCTCCCACGATCCATGCCTTTATCATCCCCTCCCTTCCCCCT
TCCGTCATCGCCCGGGCCTACCCCTTTCACCTCCCTCGCCGCACTACGAG
TCTACCCTCCTCCTCCTCAGCATTTGCCCATTCCTCCTCGCCCCTCTATT
CAAGCGCCTCGGCCGGTGCCATCCCTTTGGAAGGCGGCCTTAACCTGCCC
CCGTCCAAGCAAGGCGGGGTTCGTGACAAGCTCGATGCCCTCTACCGCTT
CACCCGACCTCACACCATCCGCGGTACCATCCTTGCCTCCCTCATGGGCG
TCCTCCGCTGTTATATCGAGCATCCCAAATCCTTTGCTAATCCGCTCCAG
CCTTTGCCAAGGGCTTTGCTTGGCCTCCTGGCCTTGCTGTGCGGCAACAT
ATTCATCGTGGGCATCAACCAAATTTACGACGTAGACATCGACAAGGTCA
ATAAGCCCTTTCTTCCCCTGGCCGCCCAGCGCATGTCGGGCAAATCTGCA
TGGGCCGTGGTGTTGGCTGCTTGTGCGGGCGGGTTGGCCATTACTAAGTC
TGCTTTTAGCCCCCTCATCTTCAACATGTACGCTGCGGGCATCCTGGCGG
GAACCCTCTACTCCGTGCCGCCCTTCTACTTTAAGCGCTTCCCGCTCGTG
GCAGCAACTACTATCGCCTTTGTGCGTGGCTTTAGTTTGAACTTCGGGGT
GTACTACGCGGTGCGGGAGGCGCTGGGCATCCCGTTCGCCTGGAACCCCA
TAGTGCTCTTCATCACCCGCTTTATGACTGTCTTCGCCGCCGTTATCGCC
GTCTCCAAAGACCTGCCCGACACGGAGGGCGACCGAAAGTATGATGTTCA
AACGTTTGCCACACGGGTGGGCGTCGCAAACATTGCGCGAGGGGCGACGG
CCGTCCTCTTTCTCAACTACGTGTCGGCCGTCGTGCAGGGAGTAGTCAAC
CCAAGCGGCGCCTTCAGGCAGTGGGTGATGGTGGGGGGACACACACTCTT
GGCCGCGCTCTTGGCACGACGGTACTCAAGGCTAGACCCCAAGAAACTGA
GCTCCATCAAGGCCTTCTACAAGAGCATCTGGGATTTGTTTTACCTGGAG
TATGTACTTTACCCTTTCCTGTAGGCTTGCAGCGTAAACGGGAAAGATTT
CAATGCAAATAATGCCAACCGTTTCTTTTTATATTTGGAGCCGTACGTTT
TAAATCTTTGAGCACACGACAGCATGGTACTGGACCCAAAAGCCCACTGC
AAACAAAAAAAAACGTGTGACGACTAGAAGCGT
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Coding sequence (CDS) from alignment at chr3:1648016..1649648+

>NO03G05740.1 ID=NO03G05740.1|Name=NO03G05740.1|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at chr3:1648016..1649648+ (Nannochloropsis oceanica)
ATGGCAGTGAGGTGGACGGCAAGGTCGCCAAGACCGGCAGCTGCAGCACC
ATGCCTCGTGCTGACCATCCTCCTAATCGTCGTGGGGGCTCCCACGATCC
ATGCCTTTATCATCCCCTCCCTTCCCCCTTCCGTCATCGCCCGGGCCTAC
CCCTTTCACCTCCCTCGCCGCACTACGAGTCTACCCTCCTCCTCCTCAGC
ATTTGCCCATTCCTCCTCGCCCCTCTATTCAAGCGCCTCGGCCGGTGCCA
TCCCTTTGGAAGGCGGCCTTAACCTGCCCCCGTCCAAGCAAGGCGGGGTT
CGTGACAAGCTCGATGCCCTCTACCGCTTCACCCGACCTCACACCATCCG
CGGTACCATCCTTGCCTCCCTCATGGGCGTCCTCCGCTGTTATATCGAGC
ATCCCAAATCCTTTGCTAATCCGCTCCAGCCTTTGCCAAGGGCTTTGCTT
GGCCTCCTGGCCTTGCTGTGCGGCAACATATTCATCGTGGGCATCAACCA
AATTTACGACGTAGACATCGACAAGGTCAATAAGCCCTTTCTTCCCCTGG
CCGCCCAGCGCATGTCGGGCAAATCTGCATGGGCCGTGGTGTTGGCTGCT
TGTGCGGGCGGGTTGGCCATTACTAAGTCTGCTTTTAGCCCCCTCATCTT
CAACATGTACGCTGCGGGCATCCTGGCGGGAACCCTCTACTCCGTGCCGC
CCTTCTACTTTAAGCGCTTCCCGCTCGTGGCAGCAACTACTATCGCCTTT
GTGCGTGGCTTTAGTTTGAACTTCGGGGTGTACTACGCGGTGCGGGAGGC
GCTGGGCATCCCGTTCGCCTGGAACCCCATAGTGCTCTTCATCACCCGCT
TTATGACTGTCTTCGCCGCCGTTATCGCCGTCTCCAAAGACCTGCCCGAC
ACGGAGGGCGACCGAAAGTATGATGTTCAAACGTTTGCCACACGGGTGGG
CGTCGCAAACATTGCGCGAGGGGCGACGGCCGTCCTCTTTCTCAACTACG
TGTCGGCCGTCGTGCAGGGAGTAGTCAACCCAAGCGGCGCCTTCAGGCAG
TGGGTGATGGTGGGGGGACACACACTCTTGGCCGCGCTCTTGGCACGACG
GTACTCAAGGCTAGACCCCAAGAAACTGAGCTCCATCAAGGCCTTCTACA
AGAGCATCTGGGATTTGTTTTACCTGGAGTATGTACTTTACCCTTTCCTG
TAG
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Synonyms
Publications