NO03G05610.1, NO03G05610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05610.1
Unique NameNO03G05610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2385
Alignment locationchr3:1608447..1611874 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1608447..1611874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05610.1 vs.
Match: EWM30037.1 (Nuclear pore localization protein NPL4 [Nannochloropsis gaditana])

HSP 1 Score: 271.2 bits (692), Expect = 6.000e-69
Identity = 150/219 (68.49%), Postives = 169/219 (77.17%), Query Frame = 0 
Query:  237 QIEAMKQPPSSLPTSFGSSFLTLAVNTSAAFAAQHPVEAFQVSQQAVQMVWDGLIAEGGVEGVIKTTSDVFVSGDTRREVDTALFILPLAITPASTPPSLPSSAPSSIVRNTLPPLKNDDDLRTALLGQSGGNRWLETREKKLLTKLADFHLLVYLAKYLRTDDLTKLCTAIVALGGGGKGGERGGGKGGGRGGGKGKSLGSPTVPPAVRALLEALCEE 456
            QIE+MK   SS P S GS+FLTLAVNTSAAF  QHPVEAFQVS Q VQMVWDGLI +GG   ++ TTSDVFVSG TRREVD ALF LPLAITP STP SLP S  SSIVRN LP LK+D+DLR ALLG+  GNRWLETR+KKLL+KLADFHLL+YL+KYLR+DDL KL +AIV+LG   K  +            + K + SPTVPPAVRALLEALC+E
Sbjct:   10 QIESMKASVSSSPPSLGSAFLTLAVNTSAAFDTQHPVEAFQVSPQGVQMVWDGLIQDGGAGALLSTTSDVFVSGKTRREVDAALFTLPLAITPDSTPSSLPPSIASSIVRNALPALKDDEDLRAALLGRERGNRWLETRDKKLLSKLADFHLLIYLSKYLRSDDLAKLSSAIVSLGEKKKRTK------------EKKGVASPTVPPAVRALLEALCDE 216
The following BLAST results are available for this feature:
BLAST of NO03G05610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30037.16.000e-6968.49Nuclear pore localization protein NPL4 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05610NO03G05610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05610.1NO03G05610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05610.1.cds1NO03G05610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05610.1.cds2NO03G05610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05610.1.cds3NO03G05610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05610.1.cds4NO03G05610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05610.1.cds5NO03G05610.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05610.1.cds6NO03G05610.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05610.1.cds7NO03G05610.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05610.1 ID=NO03G05610.1|Name=NO03G05610.1|organism=Nannochloropsis oceanica|type=mRNA|length=2385bp
CAGTCCCCTTGTCTACGGCACAATCAACCCCACAGCCACGACTAGTACCA
CTTATAAAAGCTCAGCACGGCAAATACGGCGCCTGTTACGGACCGAGGTA
TCCGTAGACAGGTAAAAAAACATGACCGCCAACACGACCCCATGCCGGGG
AGGCTACGGAGGACCGCACGGACGACCACCATTACCACCGAGGAAAGGCC
AGCACGGACGCATTTTCTTGACCTCTATTCCCCTTCTCGTGGTCCTCCTT
CTTGTGCTCCTCCTCCTCTTGTCAACTGCAGAAGCTATCAAACGTGCCCC
CACACCGGCCGCCACCGGAAGCAAACCCTCCCCCACTACCTCTCCTTCCA
ACCCCCCATCCACCACCAAGAAATCGAGAGCTACATCCAAAATACTGCCG
GCCACACCGAATAGACCATCGGAAGAGACTTGCCATGCAGAGAGGTATGC
ATGAGATGGCAATTCTATTTATATTTCCAAAGGTCAAGTCTCATCCCGTG
TTACTTCACACACGTCCTCACACTCCCGGCCCTGGACCCTCCACCCTTCC
AATCTCCATGAAATAAACTACACTCCCATCAGTCAAAGCGGGGGGCTTAC
CATCAACCTCCTGAGTGACGGGCAAACACGCGTCCTCTCCCTCCCAGTCT
CCACCACCCCGCACACCCTCCGTCGTCACCTTCTGGCCCAGGGCCTCGTG
GCCACTCCACAGGCAGAAGGCCTGCGACTTCGGAGGTTGAAGAAGGGAGG
ACGGCCAGTGACGCAAGGTAAGAAAGAACGAGTGAGATAGGGACGAGTAA
AACAATGGAATACATTCTATAACAATGAACTAACATGCATCATACTGATG
CTTTACGGAATACATTCTATAACAATGAACTAACATGCATCATACTGATG
CTTTACGGTTACCTTCAGGTCTGAGTACCGCCAATGAGCTCCAAAACGGA
GACACTATCCTCCTTCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTC
TCCCTCCCCCTCTTCATCTTCCTTCTCTTCCTCCTCCTCCTCCTTCGCAC
CTTATCCAAAGCTTGCCTACGTTCAGAAAAAAGGAGGGAGGGCCACGAGC
TTCCGGGACATGGAGCTCTACAAGGTCGTGAAGCAAGACAGACCGTTCCT
GACCCTCGCCACAGTCAACCCCTCCTCCCTGTCCTCCTTCATCTCCCGCC
TCTCCGTGGGCGCCCGCCGGGTCGGACTCCTCTATGGCTGGCTCGAAGAA
GAGGGAGAGAAAGGGCTGGAGGGAGGGAAGAGGGTGGGGCACGTGGCGGC
CGTGCTTGAGGTGGAGGAGGAGTGGCAGGAGCATGGCTCTAACGGCCGAC
TGGACGACCGGGGCCTCTTCCAGCTCCACCGCCACTCCCACCCCTCGTCC
TCCTCCCCTCCCTCCTCCTCCCACCACATCAACCCCACATTGGCTCGCGC
TGCTCGGGTGGCGGCTGCGCTGGGCTGGTGCCCCATAGGGTGGATTGCGG
CCAGGCCAGGAGGAGGAGGGGAGGGAGGGAAGGAGGGAACAAAGGAGGGA
GCGTTCCTGAATGGGCAAGAGGTGCTTGTGACGGCGCGTTTGCAGATTGA
GGCCATGAAGCAGCCCCCTTCCTCCCTCCCGACCTCCTTCGGTTCCTCCT
TCTTGACCTTGGCAGTGAACACGTCGGCAGCGTTTGCGGCCCAGCATCCG
GTAGAGGCCTTCCAGGTGTCGCAGCAGGCGGTGCAGATGGTCTGGGACGG
GCTAATCGCCGAGGGAGGGGTTGAAGGCGTCATCAAGACGACGAGCGACG
TATTTGTCTCGGGCGACACCAGGCGCGAGGTCGATACTGCCCTGTTCATT
CTGCCCCTCGCAATCACCCCTGCATCCACCCCTCCCTCCCTCCCTTCCTC
CGCCCCTTCCTCGATTGTGCGGAACACCTTGCCCCCGCTGAAGAACGACG
ACGACTTGCGGACTGCCTTGTTGGGTCAAAGCGGCGGGAACAGGTGGCTG
GAGACACGCGAGAAGAAGCTTCTGACCAAGCTCGCTGACTTCCACCTCCT
TGTCTACCTCGCCAAGTACCTCCGCACGGATGATCTGACCAAACTCTGCA
CCGCCATCGTCGCCCTCGGCGGAGGAGGGAAGGGGGGAGAAAGGGGAGGA
GGGAAGGGGGGAGGAAGGGGAGGAGGGAAGGGAAAGAGTTTAGGAAGTCC
AACAGTCCCACCGGCGGTACGGGCGCTCTTAGAGGCCTTGTGCGAGGAGG
GGTGAAAAATCGAGCGTGAAGAAGGAATAGGGGAGAGAAGAATCAAAGCA
AAGAAAAATAAGCCGGTAAATCATGACGGCCATAAAGAAGGCGGCAAAAC
GTTCCTAGAGAAGACAGCGACGATCACAAAAGCTG
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protein sequence of NO03G05610.1

>NO03G05610.1-protein ID=NO03G05610.1-protein|Name=NO03G05610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MHHTDALRLPSGLSTANELQNGDTILLPSSSSSSSSSSSPSPSSSSFSSS
SSSFAPYPKLAYVQKKGGRATSFRDMELYKVVKQDRPFLTLATVNPSSLS
SFISRLSVGARRVGLLYGWLEEEGEKGLEGGKRVGHVAAVLEVEEEWQEH
GSNGRLDDRGLFQLHRHSHPSSSSPPSSSHHINPTLARAARVAAALGWCP
IGWIAARPGGGGEGGKEGTKEGAFLNGQEVLVTARLQIEAMKQPPSSLPT
SFGSSFLTLAVNTSAAFAAQHPVEAFQVSQQAVQMVWDGLIAEGGVEGVI
KTTSDVFVSGDTRREVDTALFILPLAITPASTPPSLPSSAPSSIVRNTLP
PLKNDDDLRTALLGQSGGNRWLETREKKLLTKLADFHLLVYLAKYLRTDD
LTKLCTAIVALGGGGKGGERGGGKGGGRGGGKGKSLGSPTVPPAVRALLE
ALCEEG*
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mRNA from alignment at chr3:1608447..1611874+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05610.1 ID=NO03G05610.1|Name=NO03G05610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3428bp|location=Sequence derived from alignment at chr3:1608447..1611874+ (Nannochloropsis oceanica)
CAGTCCCCTTGTCTACGGCACAATCAACCCCACAGCCACGACTAGTACCA
CTTATAAAAGCTCAGCACGGCAAATACGGCGCCTGTTACGGACCGAGGTA
TCCGTAGACAGGTAAAAAAACATGACCGCCAACACGACCCCATGCCGGGG
AGGCTACGGAGGACCGCACGGACGACCACCATTACCACCGAGGAAAGGCC
AGCACGGACGCATTTTCTTGACCTCTATTCCCCTTCTCGTGGTCCTCCTT
CTTGTGCTCCTCCTCCTCTTGTCAACTGCAGAAGCTATCAAACGTGCCCC
CACACCGGCCGCCACCGGAAGCAAACCCTCCCCCACTACCTCTCCTTCCA
ACCCCCCATCCACCACCAAGAAATCGAGAGCTACATCCAAAATACTGCCG
GCCACACCGAATAGACCATCGGAAGAGACTTGCCATGCAGAGAGGTATGC
ATGAGATGGCAATTCTATTTATATTTCCAAAGGTCAAGTCTCATCCCGTG
TTACTTCACACACGTCCTCACACTCCCGGCCCTGGACCCTCCACCCTTCC
AATCTCCATGAAATAAACTACACTCCCATCAGTCAAAGCGGGGGGCTTAC
CATCAACCTCCTGAGTGACGGGCAAACACGCGTCCTCTCCCTCCCAGTCT
CCACCACCCCGCACACCCTCCGTCGTCACCTTCTGGCCCAGGGCCTCGTG
GCCACTCCACAGGCAGAAGGTACGACGCTTATGTCCAGGGTTTTATCCAT
ACCTCTCCACAAACACATCTTTCTCCCCTCCCTGCCTTCTTTCCCTCTCT
TTTACTAAGCACCGCATTCCCTGTCCGTAACCCCCACTTCTCATACGTAC
CACAGGCCTGCGACTTCGGAGGTTGAAGAAGGGAGGACGGCCAGTGACGC
AAGGTAAGAAAGAACGAGTGAGATAGGGACGAGTAAAACAATGGAATACA
TTCTATAACAATGAACTAACATGCATCATACTGATGCTTTACGGAATACA
TTCTATAACAATGAACTAACATGCATCATACTGATGCTTTACGGTTACCT
TCAGGTCTGAGTACCGCCAATGAGCTCCAAAACGGAGACACTATCCTCCT
TCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTCCCTCCCCCTCTT
CATCTTCCTTCTCTTCCTCCTCCTCCTCCTTCGCACCTTATCCAAAGCTT
GCCTACGTTCAGAAAAAAGGAGGGAGGGCCACGAGCTTCCGGGACATGGA
GCTCTACAAGGTAGGGAGGGAGGGAGGGAGAGAGAGAGGGAGGGCTAGTG
TTAGTGTCAGCTAGAAGAAGATAATTAATCTATATCCTCTTTATTGCATT
CCTCCATTGCACTCCTTTTCTGGAATATTGCAATAACCTTTCTCTCTTTC
CCCCCTCTTTCCTCTTAGGTCGTGAAGCAAGACAGACCGTTCCTGACCCT
CGCCACAGTCAACCCCTCCTCCCTGTCCTCCTTCATCTCCCGCCTCTCCG
TGGGCGCCCGCCGGGTCGGACTCCTCTATGGCTGGCTCGAAGAAGAGGGA
GAGAAAGGGCTGGAGGGAGGGAAGAGGGTGGGGCACGTGGCGGCCGTGCT
TGAGGTGGAGGAGGAGTGGCAGGAGCATGGGTGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAAAGCACTTGTCAGG
GAATGCACGCTCGCCATTTTATTTTTCCAAAGGCTCCATCCTGCCCTTCT
TTGTCTCCCCGCCTCCCGCCTTAACCTCCCCATCCCCTGTCCACAGCTCT
AACGGCCGACTGGACGACCGGGGCCTCTTCCAGCTCCACCGCCACTCCCA
CCCCTCGTCCTCCTCCCCTCCCTCCTCCTCCCACCACATCAACCCCACAT
TGGCTCGCGCTGCTCGGGTGGCGGCTGCGCTGGGCTGGTGCCCCATAGGG
TGGATTGCGGCCAGGCCAGGAGGAGGAGGGGAGGGAGGGAAGGAGGGAAC
AAAGGAGGGAGCGTTCCTGAATGGGCAAGAGGTGCTTGTGACGGCGCGTT
TGCAGGTAGGTGTGTCCGTCTGGAGAAGAGTGGGAAGAGAGGGACAGGAA
GAGGGGGAGGACGCGTAGAAGATGTCGACTACTCATTTTCTTTCCTATTC
CACCATGCGCAGATTGAGGCCATGAAGCAGCCCCCTTCCTCCCTCCCGAC
CTCCTTCGGTTCCTCCTTCTTGACCTTGGCAGTGAACACGTCGGCAGCGT
TTGCGGCCCAGCATCCGGTAGAGGCCTTCCAGGTGTCGCAGCAGGCGGTG
CAGATGGTCTGGGACGGGCTAATCGCCGAGGGAGGGGTTGAAGGCGTCAT
CAAGACGACGAGGTAAGGAGTAAGGGACATGGGCGAGACACTGCACAGGC
TCGTTGTTCACCCTCCCGTCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCT
CCACTCATACAGCGACGTATTTGTCTCGGGCGACACCAGGCGCGAGGTCG
ATACTGCCCTGTTCATTCTGCCCCTCGCAATCACCCCTGCATCCACCCCT
CCCTCCCTCCCTTCCTCCGCCCCTTCCTCGATTGTGCGGAACACCTTGCC
CCCGCTGAAGAACGACGACGACTTGCGGACTGCCTTGTTGGGTCAAAGCG
GCGGGAACAGGTAGGGGGAATGGAGGGGGAAGAAGGGAGGAGGGAAAGAG
GGAGGGAGTGGAGGAGGGAGGAAGAGCTCTATGACCCATCGGACGGAGGG
AGGGAGAATGGGAGGAAGATCGGGTGCATTCTTCATTTCACTAGATCGGC
CATTAACATAAACCAATACGCAGGTGGCTGGAGACACGCGAGAAGAAGCT
TCTGACCAAGCTCGCTGACTTCCACCTCCTTGTCTACCTCGCCAAGTGCG
TACATGTCCTTTTTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCACCCTCCCTCCCTCCCTCCCTCTGACTCGCGAAGCTTTGTTTTCCC
TCCCTCCCTCTGACTCGCGAAGCTTCGTTTTCCCTCCCTCCCTCTGACTC
GCGAAGCTTCGTTTTCCCTCCCTCCCTCCTTCCTCCCCTCCCTCTCCCTC
ATTACCAGGTACCTCCGCACGGATGATCTGACCAAACTCTGCACCGCCAT
CGTCGCCCTCGGCGGAGGAGGGAAGGGGGGAGAAAGGGGAGGAGGGAAGG
GGGGAGGAAGGGGAGGAGGGAAGGGAAAGAGTTTAGGAAGTCCAACAGTC
CCACCGGCGGTACGGGCGCTCTTAGAGGCCTTGTGCGAGGAGGGGTGAAA
AATCGAGCGTGAAGAAGGAATAGGGGAGAGAAGAATCAAAGCAAAGAAAA
ATAAGCCGGTAAATCATGACGGCCATAAAGAAGGCGGCAAAACGTTCCTA
GAGAAGACAGCGACGATCACAAAAGCTG
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Coding sequence (CDS) from alignment at chr3:1608447..1611874+

>NO03G05610.1 ID=NO03G05610.1|Name=NO03G05610.1|organism=Nannochloropsis oceanica|type=CDS|length=1371bp|location=Sequence derived from alignment at chr3:1608447..1611874+ (Nannochloropsis oceanica)
ATGCATCATACTGATGCTTTACGGTTACCTTCAGGTCTGAGTACCGCCAA
TGAGCTCCAAAACGGAGACACTATCCTCCTTCCCTCCTCCTCCTCCTCCT
CCTCCTCTTCCTCCTCTCCCTCCCCCTCTTCATCTTCCTTCTCTTCCTCC
TCCTCCTCCTTCGCACCTTATCCAAAGCTTGCCTACGTTCAGAAAAAAGG
AGGGAGGGCCACGAGCTTCCGGGACATGGAGCTCTACAAGGTCGTGAAGC
AAGACAGACCGTTCCTGACCCTCGCCACAGTCAACCCCTCCTCCCTGTCC
TCCTTCATCTCCCGCCTCTCCGTGGGCGCCCGCCGGGTCGGACTCCTCTA
TGGCTGGCTCGAAGAAGAGGGAGAGAAAGGGCTGGAGGGAGGGAAGAGGG
TGGGGCACGTGGCGGCCGTGCTTGAGGTGGAGGAGGAGTGGCAGGAGCAT
GGCTCTAACGGCCGACTGGACGACCGGGGCCTCTTCCAGCTCCACCGCCA
CTCCCACCCCTCGTCCTCCTCCCCTCCCTCCTCCTCCCACCACATCAACC
CCACATTGGCTCGCGCTGCTCGGGTGGCGGCTGCGCTGGGCTGGTGCCCC
ATAGGGTGGATTGCGGCCAGGCCAGGAGGAGGAGGGGAGGGAGGGAAGGA
GGGAACAAAGGAGGGAGCGTTCCTGAATGGGCAAGAGGTGCTTGTGACGG
CGCGTTTGCAGATTGAGGCCATGAAGCAGCCCCCTTCCTCCCTCCCGACC
TCCTTCGGTTCCTCCTTCTTGACCTTGGCAGTGAACACGTCGGCAGCGTT
TGCGGCCCAGCATCCGGTAGAGGCCTTCCAGGTGTCGCAGCAGGCGGTGC
AGATGGTCTGGGACGGGCTAATCGCCGAGGGAGGGGTTGAAGGCGTCATC
AAGACGACGAGCGACGTATTTGTCTCGGGCGACACCAGGCGCGAGGTCGA
TACTGCCCTGTTCATTCTGCCCCTCGCAATCACCCCTGCATCCACCCCTC
CCTCCCTCCCTTCCTCCGCCCCTTCCTCGATTGTGCGGAACACCTTGCCC
CCGCTGAAGAACGACGACGACTTGCGGACTGCCTTGTTGGGTCAAAGCGG
CGGGAACAGGTGGCTGGAGACACGCGAGAAGAAGCTTCTGACCAAGCTCG
CTGACTTCCACCTCCTTGTCTACCTCGCCAAGTACCTCCGCACGGATGAT
CTGACCAAACTCTGCACCGCCATCGTCGCCCTCGGCGGAGGAGGGAAGGG
GGGAGAAAGGGGAGGAGGGAAGGGGGGAGGAAGGGGAGGAGGGAAGGGAA
AGAGTTTAGGAAGTCCAACAGTCCCACCGGCGGTACGGGCGCTCTTAGAG
GCCTTGTGCGAGGAGGGGTGA
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Synonyms
Publications