NO03G05600.4, NO03G05600.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05600.4
Unique NameNO03G05600.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1503
Alignment locationchr3:1605815..1608134 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1605815..1608134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G05600.4 vs.
Match: EWM30033.1 (lipase family protein [Nannochloropsis gaditana])

HSP 1 Score: 321.6 bits (823), Expect = 3.800e-84
Identity = 146/227 (64.32%), Postives = 177/227 (77.97%), Query Frame = 0
Query:   31 LLLFLLLPLQPSARLAKPSSRLPDPYDENMVQVLLDYSAAAYYCRTSACETWLCSACLRHPHTQVTRVYDSEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILTPWPEDGCVHCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSLGAALAVLCMLDLLALSYPVTQTTTFGQPRVGNKEFSSFF-NQTIIPSIPFFRLVHHRDPVPHLPP 257
            +L    +  Q +ARLA    +    Y+E  V+V+LDY+AAAYYCRTSACE W CSAC RHP T+V RVYD+ HNGNGFVGWDP +GV++V+FAGTDTTS+ NWIDD+D + TPWP +GC  C+VHAGFL TY AL+ QL P ++AL+  HPQAP+W+TGHSLGAALAVLCM+DLL+LSYPV     FGQPRVGN+ FSSF   Q+   S+ F+RLVHHRDPVPHLPP
Sbjct:   42 VLFLTSITCQAAARLANTKQQNSSFYNETAVRVMLDYAAAAYYCRTSACEAWACSACSRHPRTEVRRVYDNVHNGNGFVGWDPVEGVVVVSFAGTDTTSVANWIDDLDEVKTPWPLEGCQECKVHAGFLTTYSALRPQLQPLVEALVRDHPQAPVWVTGHSLGAALAVLCMVDLLSLSYPVRAVVNFGQPRVGNQHFSSFVAAQSASLSLCFYRLVHHRDPVPHLPP 268          
The following BLAST results are available for this feature:
BLAST of NO03G05600.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30033.13.800e-8464.32lipase family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05600NO03G05600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05600.4NO03G05600.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05600.4.cds1NO03G05600.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.4.cds2NO03G05600.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.4.cds3NO03G05600.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.4.cds4NO03G05600.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.4.cds5NO03G05600.4.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05600.4.cds6NO03G05600.4.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05600.4 ID=NO03G05600.4|Name=NO03G05600.4|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp
CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA
GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC
CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA
GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT
TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG
ACGTGGTTATGCAGTGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCG
TGTGTACGACAGCGAGCACAATGGGAATGGCTTCGTGGGATGGGACCCTG
ATAAAGGTGTTATTATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTG
AAAAACTGGATCGACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGA
TGGGTGTGTGCACTGCAGGGTCCACGCAGGATTCCTTGCCACCTATGGCG
CCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCCTGCTGGAGCAGCAT
CCTCAGGCGCCGATATGGATCACTGGACACTCTCTCGGAGCTGCCCTGGC
CGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCAGA
CGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGGAGTTCTCCTCCTTC
TTCAACCAGACCATCATCCCCTCCATCCCCTTCTTCCGCCTTGTCCACCA
CCGCGACCCCGTGCCCCATCTACCACCGCAATGTACGTCCGAGGAAGGAG
GGAGGGAGGGAGGAAGACATGGAGGCTCCAGTGCCCTAACACGTGCCATC
AGACTGTCGAATAACGTGTACCCATATATACACCTTCATTCTCGCTTTCT
CTTAACCCTCCCTCCGTCCCTTCCACCCCTTCTTCCCTCTTTCCGCCCAG
CCCTGGGCTTCCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGACGAA
TCATCCTACGTCATATGTGACCCCACGGGCGAGGATAAGCATTGCTCTAA
CCAGTACTACATCGACGCCAACATTAACGATCATCTCAGTTATCTTGGTA
TGTCCTGCCCTCCCTCCTCCCCTCCTTCCCCGTCCTCTCCGTTCTTTTGT
GTGATGACAGTATCAACTGCACATAATGCTCTATCTTCCCCCCCCCCTTT
CCTTCTTCCCTCCCTCCTTCCCTCCCTTCCTCTAGGTGTGCTTTTCGGGG
CCGAGGAGCTGGAAGGCCGCATGCAAGAAATCTCCTCGTTACGAGGAGTG
GAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTATCATCCTTGTAAAAAAA
AGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAGGGGGGAAGGGTGAAAGC
AATAGAATGCATGTTTCATATGATGACAAAAAAGATCGTAGGATAGGGTG
GCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTAACCGGTTTGTTGTAATG
CGT
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protein sequence of NO03G05600.4

>NO03G05600.4-protein ID=NO03G05600.4-protein|Name=NO03G05600.4|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MLVVHLSPLSRCKRRKDDPSLPCFPWSLLLLLLFLLLPLQPSARLAKPSS
RLPDPYDENMVQVLLDYSAAAYYCRTSACETWLCSACLRHPHTQVTRVYD
SEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILTPWPEDGCV
HCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSLGAALAVLC
MLDLLALSYPVTQTTTFGQPRVGNKEFSSFFNQTIIPSIPFFRLVHHRDP
VPHLPPQCTSEEGGREGGRHGGSSALTRAIRLSNNVYPYIHLHSRFLLTL
PPSLPPLLPSFRPALGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQYY
IDANINDHLSYLGMSCPPSSPPSPSSPFFCVMTVSTAHNALSSPPPFLLP
SLLPSLPLGVLFGAEELEGRMQEISSLRGVEVNEGGRVAALSSL*
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mRNA from alignment at chr3:1605815..1608134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05600.4 ID=NO03G05600.4|Name=NO03G05600.4|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica)
CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG ACGTGGTTATGCAGGTGCGAAAGGCAAATGGGTGGGTGGGGCGGACAGGG AAGGCACGTATACGTTGCTCTGCTGCCTTGTTTCCCAGACGTGCGATGGC CTATACCATACCCTAAATGCGCTCTCTTAACTCTTTCAATCTCCACTCAG TGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCGTGTGTACGACAGCG AGCACAATGGGAATGGCTTCGTGGGATGGGACCCTGATAAAGGTGAGGGA AACGGAAGAGAGGGAGGACATGGCAGAAAGTGTATGGTAATATGGAGAGT ACGATGTGATGAAATTAGATAGATTGAATCACTTTACATTGAGGCCTTGC ATGTAAGCTCATCTGCGTATATGCGCCCTCCCTTTCCTATCAGGTGTTAT TATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTGAAAAACTGGATCG ACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGATGGGTGTGTGGTG AGTGCGGAGGAAGAGAGGGAAGCAACGAGTGAAGGGAGGAAGAGTGGGAG GCAGCGAGTAAAGAGAGGGAAAGAGGGAGGGCTTTCTGTTCTTGTTGGTC ACCAGGGGGTGGCTTGTGGCCAAGGCATCGGACATAAGGCATCCCTACCT ATCAGCCTCCCTCCCTTTCCCAGCACTGCAGGGTCCACGCAGGATTCCTT GCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCCT GCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGTAAGGACTAGG GAGGCAGGGAGGGAGGGAGGGAGGGAGCGATTGCCAAACGCGGTACGACC GATCATATTTCTCCATCCCTCAACGATAGATAAGGAATTGGGGAGGGAGT GGGCCGGCATGATAGCCTTCACCCATCCAGATTTCTTAAGCGCCTGCTCC TGCCCCTCCTTCCCTCCCTCCCTCCTTCCCCCCCTCACTCCTTCCCTCCC TCCTTCCCTCCCTCCCTATTTTCCAAGGACACTCTCTCGGAGCTGCCCTG GCCGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCA GACGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGGAGGTGAGGGAGG GAGGGAGGGGGGATGGAGAGGGTCCCCTATCTGTACGACGCGCATAGCAT ACCATTGATGTCTGTTTTTTTCCCTCTTTCGGTCCTCTTTCCCTTCCCCT TTCAGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCCCCTTC TTCCGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCGCAATG TACGTCCGAGGAAGGAGGGAGGGAGGGAGGAAGACATGGAGGCTCCAGTG CCCTAACACGTGCCATCAGACTGTCGAATAACGTGTACCCATATATACAC CTTCATTCTCGCTTTCTCTTAACCCTCCCTCCGTCCCTTCCACCCCTTCT TCCCTCTTTCCGCCCAGCCCTGGGCTTCCACCACTCGCCTTTCGAAGTGT TCTACTCCGAAGACGAATCATCCTACGTCATATGTGACCCCACGGGCGAG GATAAGCATTGCTCTAACCAGTACTACATCGACGCCAACATTAACGATCA TCTCAGTTATCTTGGTATGTCCTGCCCTCCCTCCTCCCCTCCTTCCCCGT CCTCTCCGTTCTTTTGTGTGATGACAGTATCAACTGCACATAATGCTCTA TCTTCCCCCCCCCCTTTCCTTCTTCCCTCCCTCCTTCCCTCCCTTCCTCT AGGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCT CCTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTA TCATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAG GGGGGAAGGGTGAAAGCAATAGAATGCATGTTTCATATGATGACAAAAAA GATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTA ACCGGTTTGTTGTAATGCGT
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Coding sequence (CDS) from alignment at chr3:1605815..1608134-

>NO03G05600.4 ID=NO03G05600.4|Name=NO03G05600.4|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica)
ATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGAGGAGAAAGGA
TGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTCCTCCTTCTCT
TCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAAGCCCTCCAGT
CGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGTTACTCGACTA
TTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAGACGTGGTTAT
GCAGTGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCGTGTGTACGAC
AGCGAGCACAATGGGAATGGCTTCGTGGGATGGGACCCTGATAAAGGTGT
TATTATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTGAAAAACTGGA
TCGACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGATGGGTGTGTG
CACTGCAGGGTCCACGCAGGATTCCTTGCCACCTATGGCGCCCTCCAGTC
CCAGCTCTTGCCGGCCATCCAGGCCCTGCTGGAGCAGCATCCTCAGGCGC
CGATATGGATCACTGGACACTCTCTCGGAGCTGCCCTGGCCGTGTTGTGC
ATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCAGACGACTACCTT
CGGCCAGCCGCGCGTGGGGAACAAGGAGTTCTCCTCCTTCTTCAACCAGA
CCATCATCCCCTCCATCCCCTTCTTCCGCCTTGTCCACCACCGCGACCCC
GTGCCCCATCTACCACCGCAATGTACGTCCGAGGAAGGAGGGAGGGAGGG
AGGAAGACATGGAGGCTCCAGTGCCCTAACACGTGCCATCAGACTGTCGA
ATAACGTGTACCCATATATACACCTTCATTCTCGCTTTCTCTTAACCCTC
CCTCCGTCCCTTCCACCCCTTCTTCCCTCTTTCCGCCCAGCCCTGGGCTT
CCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGACGAATCATCCTACG
TCATATGTGACCCCACGGGCGAGGATAAGCATTGCTCTAACCAGTACTAC
ATCGACGCCAACATTAACGATCATCTCAGTTATCTTGGTATGTCCTGCCC
TCCCTCCTCCCCTCCTTCCCCGTCCTCTCCGTTCTTTTGTGTGATGACAG
TATCAACTGCACATAATGCTCTATCTTCCCCCCCCCCTTTCCTTCTTCCC
TCCCTCCTTCCCTCCCTTCCTCTAGGTGTGCTTTTCGGGGCCGAGGAGCT
GGAAGGCCGCATGCAAGAAATCTCCTCGTTACGAGGAGTGGAGGTGAATG
AGGGGGGGCGGGTTGCGGCGTTATCATCCTTGTAA
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Synonyms
Publications