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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1605815..1608134 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05600.4 vs.
Match: EWM30033.1 (lipase family protein [Nannochloropsis gaditana]) HSP 1 Score: 321.6 bits (823), Expect = 3.800e-84 Identity = 146/227 (64.32%), Postives = 177/227 (77.97%), Query Frame = 0
Query: 31 LLLFLLLPLQPSARLAKPSSRLPDPYDENMVQVLLDYSAAAYYCRTSACETWLCSACLRHPHTQVTRVYDSEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILTPWPEDGCVHCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSLGAALAVLCMLDLLALSYPVTQTTTFGQPRVGNKEFSSFF-NQTIIPSIPFFRLVHHRDPVPHLPP 257
+L + Q +ARLA + Y+E V+V+LDY+AAAYYCRTSACE W CSAC RHP T+V RVYD+ HNGNGFVGWDP +GV++V+FAGTDTTS+ NWIDD+D + TPWP +GC C+VHAGFL TY AL+ QL P ++AL+ HPQAP+W+TGHSLGAALAVLCM+DLL+LSYPV FGQPRVGN+ FSSF Q+ S+ F+RLVHHRDPVPHLPP
Sbjct: 42 VLFLTSITCQAAARLANTKQQNSSFYNETAVRVMLDYAAAAYYCRTSACEAWACSACSRHPRTEVRRVYDNVHNGNGFVGWDPVEGVVVVSFAGTDTTSVANWIDDLDEVKTPWPLEGCQECKVHAGFLTTYSALRPQLQPLVEALVRDHPQAPVWVTGHSLGAALAVLCMVDLLSLSYPVRAVVNFGQPRVGNQHFSSFVAAQSASLSLCFYRLVHHRDPVPHLPP 268
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05600.4 ID=NO03G05600.4|Name=NO03G05600.4|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG ACGTGGTTATGCAGTGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCG TGTGTACGACAGCGAGCACAATGGGAATGGCTTCGTGGGATGGGACCCTG ATAAAGGTGTTATTATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTG AAAAACTGGATCGACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGA TGGGTGTGTGCACTGCAGGGTCCACGCAGGATTCCTTGCCACCTATGGCG CCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCCTGCTGGAGCAGCAT CCTCAGGCGCCGATATGGATCACTGGACACTCTCTCGGAGCTGCCCTGGC CGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCAGA CGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGGAGTTCTCCTCCTTC TTCAACCAGACCATCATCCCCTCCATCCCCTTCTTCCGCCTTGTCCACCA CCGCGACCCCGTGCCCCATCTACCACCGCAATGTACGTCCGAGGAAGGAG GGAGGGAGGGAGGAAGACATGGAGGCTCCAGTGCCCTAACACGTGCCATC AGACTGTCGAATAACGTGTACCCATATATACACCTTCATTCTCGCTTTCT CTTAACCCTCCCTCCGTCCCTTCCACCCCTTCTTCCCTCTTTCCGCCCAG CCCTGGGCTTCCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGACGAA TCATCCTACGTCATATGTGACCCCACGGGCGAGGATAAGCATTGCTCTAA CCAGTACTACATCGACGCCAACATTAACGATCATCTCAGTTATCTTGGTA TGTCCTGCCCTCCCTCCTCCCCTCCTTCCCCGTCCTCTCCGTTCTTTTGT GTGATGACAGTATCAACTGCACATAATGCTCTATCTTCCCCCCCCCCTTT CCTTCTTCCCTCCCTCCTTCCCTCCCTTCCTCTAGGTGTGCTTTTCGGGG CCGAGGAGCTGGAAGGCCGCATGCAAGAAATCTCCTCGTTACGAGGAGTG GAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTATCATCCTTGTAAAAAAA AGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAGGGGGGAAGGGTGAAAGC AATAGAATGCATGTTTCATATGATGACAAAAAAGATCGTAGGATAGGGTG GCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTAACCGGTTTGTTGTAATG CGT back to topprotein sequence of NO03G05600.4 >NO03G05600.4-protein ID=NO03G05600.4-protein|Name=NO03G05600.4|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp MLVVHLSPLSRCKRRKDDPSLPCFPWSLLLLLLFLLLPLQPSARLAKPSS RLPDPYDENMVQVLLDYSAAAYYCRTSACETWLCSACLRHPHTQVTRVYD SEHNGNGFVGWDPDKGVIIVAFAGTDTTSLKNWIDDIDSILTPWPEDGCV HCRVHAGFLATYGALQSQLLPAIQALLEQHPQAPIWITGHSLGAALAVLC MLDLLALSYPVTQTTTFGQPRVGNKEFSSFFNQTIIPSIPFFRLVHHRDP VPHLPPQCTSEEGGREGGRHGGSSALTRAIRLSNNVYPYIHLHSRFLLTL PPSLPPLLPSFRPALGFHHSPFEVFYSEDESSYVICDPTGEDKHCSNQYY IDANINDHLSYLGMSCPPSSPPSPSSPFFCVMTVSTAHNALSSPPPFLLP SLLPSLPLGVLFGAEELEGRMQEISSLRGVEVNEGGRVAALSSL* back to topmRNA from alignment at chr3:1605815..1608134- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05600.4 ID=NO03G05600.4|Name=NO03G05600.4|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica) CAGGCCCAGAATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGA
GGAGAAAGGATGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTC
CTCCTTCTCTTCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAA
GCCCTCCAGTCGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGT
TACTCGACTATTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAG
ACGTGGTTATGCAGGTGCGAAAGGCAAATGGGTGGGTGGGGCGGACAGGG
AAGGCACGTATACGTTGCTCTGCTGCCTTGTTTCCCAGACGTGCGATGGC
CTATACCATACCCTAAATGCGCTCTCTTAACTCTTTCAATCTCCACTCAG
TGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCGTGTGTACGACAGCG
AGCACAATGGGAATGGCTTCGTGGGATGGGACCCTGATAAAGGTGAGGGA
AACGGAAGAGAGGGAGGACATGGCAGAAAGTGTATGGTAATATGGAGAGT
ACGATGTGATGAAATTAGATAGATTGAATCACTTTACATTGAGGCCTTGC
ATGTAAGCTCATCTGCGTATATGCGCCCTCCCTTTCCTATCAGGTGTTAT
TATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTGAAAAACTGGATCG
ACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGATGGGTGTGTGGTG
AGTGCGGAGGAAGAGAGGGAAGCAACGAGTGAAGGGAGGAAGAGTGGGAG
GCAGCGAGTAAAGAGAGGGAAAGAGGGAGGGCTTTCTGTTCTTGTTGGTC
ACCAGGGGGTGGCTTGTGGCCAAGGCATCGGACATAAGGCATCCCTACCT
ATCAGCCTCCCTCCCTTTCCCAGCACTGCAGGGTCCACGCAGGATTCCTT
GCCACCTATGGCGCCCTCCAGTCCCAGCTCTTGCCGGCCATCCAGGCCCT
GCTGGAGCAGCATCCTCAGGCGCCGATATGGATCACTGGTAAGGACTAGG
GAGGCAGGGAGGGAGGGAGGGAGGGAGCGATTGCCAAACGCGGTACGACC
GATCATATTTCTCCATCCCTCAACGATAGATAAGGAATTGGGGAGGGAGT
GGGCCGGCATGATAGCCTTCACCCATCCAGATTTCTTAAGCGCCTGCTCC
TGCCCCTCCTTCCCTCCCTCCCTCCTTCCCCCCCTCACTCCTTCCCTCCC
TCCTTCCCTCCCTCCCTATTTTCCAAGGACACTCTCTCGGAGCTGCCCTG
GCCGTGTTGTGCATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCA
GACGACTACCTTCGGCCAGCCGCGCGTGGGGAACAAGGAGGTGAGGGAGG
GAGGGAGGGGGGATGGAGAGGGTCCCCTATCTGTACGACGCGCATAGCAT
ACCATTGATGTCTGTTTTTTTCCCTCTTTCGGTCCTCTTTCCCTTCCCCT
TTCAGTTCTCCTCCTTCTTCAACCAGACCATCATCCCCTCCATCCCCTTC
TTCCGCCTTGTCCACCACCGCGACCCCGTGCCCCATCTACCACCGCAATG
TACGTCCGAGGAAGGAGGGAGGGAGGGAGGAAGACATGGAGGCTCCAGTG
CCCTAACACGTGCCATCAGACTGTCGAATAACGTGTACCCATATATACAC
CTTCATTCTCGCTTTCTCTTAACCCTCCCTCCGTCCCTTCCACCCCTTCT
TCCCTCTTTCCGCCCAGCCCTGGGCTTCCACCACTCGCCTTTCGAAGTGT
TCTACTCCGAAGACGAATCATCCTACGTCATATGTGACCCCACGGGCGAG
GATAAGCATTGCTCTAACCAGTACTACATCGACGCCAACATTAACGATCA
TCTCAGTTATCTTGGTATGTCCTGCCCTCCCTCCTCCCCTCCTTCCCCGT
CCTCTCCGTTCTTTTGTGTGATGACAGTATCAACTGCACATAATGCTCTA
TCTTCCCCCCCCCCTTTCCTTCTTCCCTCCCTCCTTCCCTCCCTTCCTCT
AGGTGTGCTTTTCGGGGCCGAGGAGCTGGAAGGCCGCATGCAAGAAATCT
CCTCGTTACGAGGAGTGGAGGTGAATGAGGGGGGGCGGGTTGCGGCGTTA
TCATCCTTGTAAAAAAAAGTTGTGTGAAAGAAATGGAGGAAGAAGAGGAG
GGGGGAAGGGTGAAAGCAATAGAATGCATGTTTCATATGATGACAAAAAA
GATCGTAGGATAGGGTGGCCTTGCCCGCGTAGAAAAGGAATGAAGAAGTA
ACCGGTTTGTTGTAATGCGT back to topCoding sequence (CDS) from alignment at chr3:1605815..1608134- >NO03G05600.4 ID=NO03G05600.4|Name=NO03G05600.4|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at chr3:1605815..1608134- (Nannochloropsis oceanica) ATGCTTGTCGTTCATCTCTCCCCGCTTTCAAGGTGCAAGAGGAGAAAGGA TGACCCGTCTCTGCCCTGCTTTCCATGGTCCCTTCTCCTCCTCCTTCTCT TCCTCCTCCTCCCCCTCCAGCCCTCCGCCCGCCTGGCAAAGCCCTCCAGT CGTCTTCCTGACCCGTACGACGAGAATATGGTGCAAGTGTTACTCGACTA TTCCGCCGCGGCTTACTACTGTCGGACTAGCGCGTGTGAGACGTGGTTAT GCAGTGCCTGCCTTCGGCATCCGCACACGCAGGTGACGCGTGTGTACGAC AGCGAGCACAATGGGAATGGCTTCGTGGGATGGGACCCTGATAAAGGTGT TATTATAGTTGCGTTTGCGGGCACGGACACGACGAGCCTGAAAAACTGGA TCGACGACATTGATAGCATCCTCACGCCCTGGCCGGAGGATGGGTGTGTG CACTGCAGGGTCCACGCAGGATTCCTTGCCACCTATGGCGCCCTCCAGTC CCAGCTCTTGCCGGCCATCCAGGCCCTGCTGGAGCAGCATCCTCAGGCGC CGATATGGATCACTGGACACTCTCTCGGAGCTGCCCTGGCCGTGTTGTGC ATGCTGGATCTGCTCGCTCTCTCATATCCCGTCACGCAGACGACTACCTT CGGCCAGCCGCGCGTGGGGAACAAGGAGTTCTCCTCCTTCTTCAACCAGA CCATCATCCCCTCCATCCCCTTCTTCCGCCTTGTCCACCACCGCGACCCC GTGCCCCATCTACCACCGCAATGTACGTCCGAGGAAGGAGGGAGGGAGGG AGGAAGACATGGAGGCTCCAGTGCCCTAACACGTGCCATCAGACTGTCGA ATAACGTGTACCCATATATACACCTTCATTCTCGCTTTCTCTTAACCCTC CCTCCGTCCCTTCCACCCCTTCTTCCCTCTTTCCGCCCAGCCCTGGGCTT CCACCACTCGCCTTTCGAAGTGTTCTACTCCGAAGACGAATCATCCTACG TCATATGTGACCCCACGGGCGAGGATAAGCATTGCTCTAACCAGTACTAC ATCGACGCCAACATTAACGATCATCTCAGTTATCTTGGTATGTCCTGCCC TCCCTCCTCCCCTCCTTCCCCGTCCTCTCCGTTCTTTTGTGTGATGACAG TATCAACTGCACATAATGCTCTATCTTCCCCCCCCCCTTTCCTTCTTCCC TCCCTCCTTCCCTCCCTTCCTCTAGGTGTGCTTTTCGGGGCCGAGGAGCT GGAAGGCCGCATGCAAGAAATCTCCTCGTTACGAGGAGTGGAGGTGAATG AGGGGGGGCGGGTTGCGGCGTTATCATCCTTGTAA back to top
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