NO03G05590.1, NO03G05590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05590.1
Unique NameNO03G05590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2100
Alignment locationchr3:1602984..1605470 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1602984..1605470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G05590.1 vs.
Match: XP_024373455.1 (calcium-transporting ATPase 1-like [Physcomitrella patens])

HSP 1 Score: 199.9 bits (507), Expect = 2.600e-47
Identity = 141/353 (39.94%), Postives = 190/353 (53.82%), Query Frame = 0 
Query:  318 GREEHFVVVCPDT----PGWQADAKLLENGAVFCRASPDEKLALLRALQREGGREGGRGARHVVAVTGDGANDALSLAAADVGLAMGRSVDQAKAAAGIVVAHEEFPALLHTLREGRRLFANFRKALAFYLGAKSALLLLFLLAPL----PLSPLQIILLELFMDVGASTTFTLEPADGDLMLIPPRHPSLPFFDDELLQATLAGGLSLLLVVLLSGGASDGHGGREGGRMDALEYRQSLYFYGWLLGHIFLALHLRSFHQPLVVKGVFSNPAFLVWAGAVLLLVVLLALFPPLGQVLGLVGLTRREWFRLTSLALVGTGWMEGWKLRRWYGPGGSHAKETAILMRRRRGREE 663
            GRE+   V C D        +    L+    VF R +P++KL +L  LQ         G+   V  TGDG NDA  LA ADVG+AMG+  D A+ AA IV   + F  +   L EGRRL AN RKALAFYLGAK  L++LF++  L    PLS +QII+LELFMD+GAST+F +EPAD D+M  PP   +  FF+ E++   L   L ++  VL+S            G     E  QS  F  WLL H+ LAL+LR+F +P+  KG FSNPA  VW  A + L    ++   L + L L  +  R+W  LT + + GT W+E  K+          A+ +A++      REE
Sbjct:  780 GREDVAGVSCADVLLQCMAEEEIQNLVAETCVFARTTPNDKLIILETLQ---------GSGKCVMATGDGFNDAPILAKADVGVAMGKGTDVAREAASIVFVDDNFAMVPFALAEGRRLLANLRKALAFYLGAKIGLIMLFIIGTLWKSFPLSAIQIIVLELFMDLGASTSFVMEPADTDIMRRPPLDSTKRFFNREIVGGILVSALCMIFTVLVSFAY---------GVYVHPETAQSSAFLAWLLAHVLLALNLRTFREPVYYKGFFSNPAMCVWLVAAVGLAATSSVSALLRRHLKLEVVPLRQWLVLTVICVCGTFWVEMAKI--------ISARRSAVISDHADKREE 1106
The following BLAST results are available for this feature:
BLAST of NO03G05590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024373455.12.600e-4739.94calcium-transporting ATPase 1-like [Physcomitrella... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05590NO03G05590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05590.1NO03G05590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05590.1.cds1NO03G05590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05590.1.cds2NO03G05590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05590.1.cds3NO03G05590.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05590.1 ID=NO03G05590.1|Name=NO03G05590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2100bp
ATGCCGGCTACGCCGATGGTGCCGGACATTCCTGACGTCTTTGACCGGGC
GGTGTTGCTGTCGTACATCCTGTGGACCGAGGAGGAGTTTCGTCCTTCCC
TTTCCGCAGAGGTGAAGAGCCATCTGCGGAGGATGATACCACCGCTTCTC
CAGCACAAGGCCTCTCACGCCTCCCTCCTCGCTGAGGATCCCTTCGACCC
CTCCCGAAAGGTTTCCGCCAGGGCGTATCGTGTGAGGAAGGGAGAGAGGG
AGGAGAATGGGAGAGGGGTAGATAATCGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGGATGGTCCGGAATCTTTTGCAGTACGTAGGGGTACG
AGGAGGAGGAGGGAAGGGAGAAGGGGGAGGGGAGGGGAAGGTGAAGGTGT
TCTTCCGAGGGGCGCCGGACGTGCTGTTGGACGAGTGTGAGTATGTGTGG
GTGCGCGGACAGCCCCGGCGGTTGGGGAGGGAAGAGCGTCACCAGCTGGC
CGAACTGTTGGACACTTTGTGTGGAGAGGGGTTGCGCGTGCTCGGCTTTG
CTGCCACTACCACTGCAGCCGCTGCTGTCGGTGCGGCAGGGAAGGGTGGA
GATACCTCCCTCACCTCCTCCCTCCTTCCCTCCGCGGCCATTACGGGCTT
CCTCGCCTTCGAAGACCCCGTCCGCGCGTCGGTGGCCGAGGCAATCCACA
CCTGCCACGACGCCGGTATACGCGTTGTGATGCTCACTGGTGACCATCAG
CTCACCGCCTGCTCCATCGCCCGCCAGGTGGGCATCCTTCCCTCCCTTCC
TCCGTCCCTCCCTCCTTCCTCTTCAGGCAAGGGAGGGAAGGCAAGAAAGG
GGAAAAAAACTCGGCGGCCCATATCCTCTGTGTCCGCGTACCAGTCCGTG
GAAGAGGGAGGAGTGGGGTCCGAGGCCGGGACGGAGGCAGGGACGGAGGG
TGGGAGGGAAGAGCACTTCGTGGTGGTGTGCCCGGATACACCCGGGTGGC
AAGCAGACGCGAAGCTGCTCGAGAATGGAGCTGTGTTTTGCCGCGCAAGC
CCTGACGAGAAACTTGCCTTGCTGCGGGCGTTGCAGAGAGAGGGGGGGAG
GGAAGGAGGGAGGGGGGCGAGGCACGTGGTGGCGGTGACGGGGGATGGCG
CGAATGACGCGCTGAGTTTGGCAGCGGCGGATGTGGGGCTGGCGATGGGG
AGGAGCGTCGACCAGGCCAAGGCCGCGGCCGGCATCGTGGTGGCCCACGA
GGAGTTTCCTGCCCTTCTACACACCCTGAGGGAAGGGCGTCGCCTCTTTG
CCAACTTCCGCAAAGCCCTCGCATTCTACCTCGGCGCCAAGTCCGCCCTC
CTCCTCCTTTTCCTCCTCGCCCCTCTCCCCCTCTCCCCCCTTCAGATCAT
CCTCCTCGAGCTCTTCATGGACGTCGGGGCCTCTACGACCTTCACGCTTG
AACCTGCCGACGGCGATCTCATGCTCATCCCTCCTCGCCACCCTTCCCTC
CCCTTCTTTGACGACGAGCTCCTCCAGGCCACGCTGGCAGGAGGGCTCTC
CCTCCTCCTCGTCGTTCTCCTTTCTGGAGGCGCGTCTGATGGGCATGGCG
GGAGGGAGGGAGGGAGGATGGACGCATTAGAGTACAGGCAATCCCTCTAC
TTTTACGGGTGGCTGCTTGGGCATATCTTCCTGGCCTTGCACCTGCGGTC
CTTCCATCAGCCCCTTGTGGTCAAGGGCGTTTTCTCCAACCCCGCCTTCC
TTGTGTGGGCAGGGGCTGTCCTCCTCCTTGTCGTCCTCCTCGCCCTCTTC
CCCCCCCTCGGTCAAGTTCTTGGCCTGGTGGGCTTGACCCGGCGAGAATG
GTTTCGTCTGACTTCGCTGGCTCTCGTGGGCACGGGATGGATGGAAGGAT
GGAAGCTGAGGAGATGGTATGGGCCAGGGGGTTCTCACGCGAAGGAGACA
GCGATCTTGATGAGAAGGAGGAGAGGTAGGGAGGAGAGCGAGGAGAATCA
CCAGGTCGTGGTCGTCAGAGAGGGGGCAGCGAGGATTGTGGCAGCAGCAA
AAGCGGGGGGACCGTCGATGGTTACGGAAAAGGATCGCTTGTTAGGGTAG
back to top

protein sequence of NO03G05590.1

>NO03G05590.1-protein ID=NO03G05590.1-protein|Name=NO03G05590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=700bp
MPATPMVPDIPDVFDRAVLLSYILWTEEEFRPSLSAEVKSHLRRMIPPLL
QHKASHASLLAEDPFDPSRKVSARAYRVRKGEREENGRGVDNRGGGGGGG
GGGGGMVRNLLQYVGVRGGGGKGEGGGEGKVKVFFRGAPDVLLDECEYVW
VRGQPRRLGREERHQLAELLDTLCGEGLRVLGFAATTTAAAAVGAAGKGG
DTSLTSSLLPSAAITGFLAFEDPVRASVAEAIHTCHDAGIRVVMLTGDHQ
LTACSIARQVGILPSLPPSLPPSSSGKGGKARKGKKTRRPISSVSAYQSV
EEGGVGSEAGTEAGTEGGREEHFVVVCPDTPGWQADAKLLENGAVFCRAS
PDEKLALLRALQREGGREGGRGARHVVAVTGDGANDALSLAAADVGLAMG
RSVDQAKAAAGIVVAHEEFPALLHTLREGRRLFANFRKALAFYLGAKSAL
LLLFLLAPLPLSPLQIILLELFMDVGASTTFTLEPADGDLMLIPPRHPSL
PFFDDELLQATLAGGLSLLLVVLLSGGASDGHGGREGGRMDALEYRQSLY
FYGWLLGHIFLALHLRSFHQPLVVKGVFSNPAFLVWAGAVLLLVVLLALF
PPLGQVLGLVGLTRREWFRLTSLALVGTGWMEGWKLRRWYGPGGSHAKET
AILMRRRRGREESEENHQVVVVREGAARIVAAAKAGGPSMVTEKDRLLG*
back to top

mRNA from alignment at chr3:1602984..1605470+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05590.1 ID=NO03G05590.1|Name=NO03G05590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp|location=Sequence derived from alignment at chr3:1602984..1605470+ (Nannochloropsis oceanica)
ATGCCGGCTACGCCGATGGTGCCGGACATTCCTGACGTCTTTGACCGGGC
GGTGTTGCTGTCGTACATCCTGTGGACCGAGGAGGAGTTTCGTCCTTCCC
TTTCCGCAGAGGTATGGACTGAGAAAGAGGAAAGGGAGAGAGGGACTGAT
GTGCGTGGCCGATTCGAAATTGTTACCGCACCAATTTATCCCTCTCTCCT
TCCCTCCCTCCCTCCCTCCCTTCCTCATCTAAAAGATAAACTTGCCCGCA
CCCTGCACTCTACAAAAGTTCTCCTCGGTCTCGAGGCCTTCCATATCTCC
CACTCACCCTCCCTCCTTTTCTTCCTCCCTCCCTTTCTCCCTCCGTCCAG
GTGAAGAGCCATCTGCGGAGGATGATACCACCGCTTCTCCAGCACAAGGC
CTCTCACGCCTCCCTCCTCGCTGAGGATCCCTTCGACCCCTCCCGAAAGG
TTTCCGCCAGGGCGTATCGTGTGAGGAAGGGAGAGAGGGAGGAGAATGGG
AGAGGGGTAGATAATCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGGATGGTCCGGAATCTTTTGCAGTACGTAGGGGTACGAGGAGGAGGAG
GGAAGGGAGAAGGGGGAGGGGAGGGGAAGGTGAAGGTGTTCTTCCGAGGG
GCGCCGGACGTGCTGTTGGACGAGTGTGAGTATGTGTGGGTGCGCGGACA
GCCCCGGCGGTTGGGGAGGGAAGAGCGTCACCAGCTGGCCGAACTGTTGG
ACACTTTGTGTGGAGAGGGGTTGCGCGTGCTCGGCTTTGCTGCCACTACC
ACTGCAGCCGCTGCTGTCGGTGCGGCAGGGAAGGGTGGAGATACCTCCCT
CACCTCCTCCCTCCTTCCCTCCGCGGCCATTACGGGCTTCCTCGCCTTCG
AAGACCCCGTCCGCGCGTCGGTGGCCGAGGCAATCCACACCTGCCACGAC
GCCGGTATACGCGTTGTGATGCTCACTGGTGACCATCAGCTCACCGCCTG
CTCCATCGCCCGCCAGGTGGGCATCCTTCCCTCCCTTCCTCCGTCCCTCC
CTCCTTCCTCTTCAGGCAAGGGAGGGAAGGCAAGAAAGGGGAAAAAAACT
CGGCGGCCCATATCCTCTGTGTCCGCGTACCAGTCCGTGGAAGAGGGAGG
AGTGGGGTCCGAGGCCGGGACGGAGGCAGGGACGGAGGGTGGGAGGGAAG
AGCACTTCGTGGTGGTGTGCCCGGATACACCCGGGTGGCAAGCAGACGCG
AAGCTGCTCGAGAATGGAGCTGTGTTTTGCCGCGCAAGCCCTGACGAGAA
ACTTGCCTTGCTGCGGGCGTTGCAGAGAGAGGGGGGGAGGGAAGGAGGGA
GGGGGGCGAGGCACGTGGTGGCGGTGACGGGGGATGGCGCGAATGACGCG
CTGAGTTTGGCAGCGGCGGATGTGGGGCTGGCGATGGGGAGGTACGTCGG
GGGAAAGGGATGGAAGGAAAAGAGGTGCGCGCTAGTACTTCCATACATAT
TTATGTATGAGTGTGCAAGCATGGCCCGAGGCATTTTTTTCCTTCTCCAC
CTCAACCTCCTCCTCTTTCCCTCCCCTCCCTCCTCCCAGGAGCGTCGACC
AGGCCAAGGCCGCGGCCGGCATCGTGGTGGCCCACGAGGAGTTTCCTGCC
CTTCTACACACCCTGAGGGAAGGGCGTCGCCTCTTTGCCAACTTCCGCAA
AGCCCTCGCATTCTACCTCGGCGCCAAGTCCGCCCTCCTCCTCCTTTTCC
TCCTCGCCCCTCTCCCCCTCTCCCCCCTTCAGATCATCCTCCTCGAGCTC
TTCATGGACGTCGGGGCCTCTACGACCTTCACGCTTGAACCTGCCGACGG
CGATCTCATGCTCATCCCTCCTCGCCACCCTTCCCTCCCCTTCTTTGACG
ACGAGCTCCTCCAGGCCACGCTGGCAGGAGGGCTCTCCCTCCTCCTCGTC
GTTCTCCTTTCTGGAGGCGCGTCTGATGGGCATGGCGGGAGGGAGGGAGG
GAGGATGGACGCATTAGAGTACAGGCAATCCCTCTACTTTTACGGGTGGC
TGCTTGGGCATATCTTCCTGGCCTTGCACCTGCGGTCCTTCCATCAGCCC
CTTGTGGTCAAGGGCGTTTTCTCCAACCCCGCCTTCCTTGTGTGGGCAGG
GGCTGTCCTCCTCCTTGTCGTCCTCCTCGCCCTCTTCCCCCCCCTCGGTC
AAGTTCTTGGCCTGGTGGGCTTGACCCGGCGAGAATGGTTTCGTCTGACT
TCGCTGGCTCTCGTGGGCACGGGATGGATGGAAGGATGGAAGCTGAGGAG
ATGGTATGGGCCAGGGGGTTCTCACGCGAAGGAGACAGCGATCTTGATGA
GAAGGAGGAGAGGTAGGGAGGAGAGCGAGGAGAATCACCAGGTCGTGGTC
GTCAGAGAGGGGGCAGCGAGGATTGTGGCAGCAGCAAAAGCGGGGGGACC
GTCGATGGTTACGGAAAAGGATCGCTTGTTAGGGTAG
back to top

Coding sequence (CDS) from alignment at chr3:1602984..1605470+

>NO03G05590.1 ID=NO03G05590.1|Name=NO03G05590.1|organism=Nannochloropsis oceanica|type=CDS|length=2100bp|location=Sequence derived from alignment at chr3:1602984..1605470+ (Nannochloropsis oceanica)
ATGCCGGCTACGCCGATGGTGCCGGACATTCCTGACGTCTTTGACCGGGC
GGTGTTGCTGTCGTACATCCTGTGGACCGAGGAGGAGTTTCGTCCTTCCC
TTTCCGCAGAGGTGAAGAGCCATCTGCGGAGGATGATACCACCGCTTCTC
CAGCACAAGGCCTCTCACGCCTCCCTCCTCGCTGAGGATCCCTTCGACCC
CTCCCGAAAGGTTTCCGCCAGGGCGTATCGTGTGAGGAAGGGAGAGAGGG
AGGAGAATGGGAGAGGGGTAGATAATCGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGGATGGTCCGGAATCTTTTGCAGTACGTAGGGGTACG
AGGAGGAGGAGGGAAGGGAGAAGGGGGAGGGGAGGGGAAGGTGAAGGTGT
TCTTCCGAGGGGCGCCGGACGTGCTGTTGGACGAGTGTGAGTATGTGTGG
GTGCGCGGACAGCCCCGGCGGTTGGGGAGGGAAGAGCGTCACCAGCTGGC
CGAACTGTTGGACACTTTGTGTGGAGAGGGGTTGCGCGTGCTCGGCTTTG
CTGCCACTACCACTGCAGCCGCTGCTGTCGGTGCGGCAGGGAAGGGTGGA
GATACCTCCCTCACCTCCTCCCTCCTTCCCTCCGCGGCCATTACGGGCTT
CCTCGCCTTCGAAGACCCCGTCCGCGCGTCGGTGGCCGAGGCAATCCACA
CCTGCCACGACGCCGGTATACGCGTTGTGATGCTCACTGGTGACCATCAG
CTCACCGCCTGCTCCATCGCCCGCCAGGTGGGCATCCTTCCCTCCCTTCC
TCCGTCCCTCCCTCCTTCCTCTTCAGGCAAGGGAGGGAAGGCAAGAAAGG
GGAAAAAAACTCGGCGGCCCATATCCTCTGTGTCCGCGTACCAGTCCGTG
GAAGAGGGAGGAGTGGGGTCCGAGGCCGGGACGGAGGCAGGGACGGAGGG
TGGGAGGGAAGAGCACTTCGTGGTGGTGTGCCCGGATACACCCGGGTGGC
AAGCAGACGCGAAGCTGCTCGAGAATGGAGCTGTGTTTTGCCGCGCAAGC
CCTGACGAGAAACTTGCCTTGCTGCGGGCGTTGCAGAGAGAGGGGGGGAG
GGAAGGAGGGAGGGGGGCGAGGCACGTGGTGGCGGTGACGGGGGATGGCG
CGAATGACGCGCTGAGTTTGGCAGCGGCGGATGTGGGGCTGGCGATGGGG
AGGAGCGTCGACCAGGCCAAGGCCGCGGCCGGCATCGTGGTGGCCCACGA
GGAGTTTCCTGCCCTTCTACACACCCTGAGGGAAGGGCGTCGCCTCTTTG
CCAACTTCCGCAAAGCCCTCGCATTCTACCTCGGCGCCAAGTCCGCCCTC
CTCCTCCTTTTCCTCCTCGCCCCTCTCCCCCTCTCCCCCCTTCAGATCAT
CCTCCTCGAGCTCTTCATGGACGTCGGGGCCTCTACGACCTTCACGCTTG
AACCTGCCGACGGCGATCTCATGCTCATCCCTCCTCGCCACCCTTCCCTC
CCCTTCTTTGACGACGAGCTCCTCCAGGCCACGCTGGCAGGAGGGCTCTC
CCTCCTCCTCGTCGTTCTCCTTTCTGGAGGCGCGTCTGATGGGCATGGCG
GGAGGGAGGGAGGGAGGATGGACGCATTAGAGTACAGGCAATCCCTCTAC
TTTTACGGGTGGCTGCTTGGGCATATCTTCCTGGCCTTGCACCTGCGGTC
CTTCCATCAGCCCCTTGTGGTCAAGGGCGTTTTCTCCAACCCCGCCTTCC
TTGTGTGGGCAGGGGCTGTCCTCCTCCTTGTCGTCCTCCTCGCCCTCTTC
CCCCCCCTCGGTCAAGTTCTTGGCCTGGTGGGCTTGACCCGGCGAGAATG
GTTTCGTCTGACTTCGCTGGCTCTCGTGGGCACGGGATGGATGGAAGGAT
GGAAGCTGAGGAGATGGTATGGGCCAGGGGGTTCTCACGCGAAGGAGACA
GCGATCTTGATGAGAAGGAGGAGAGGTAGGGAGGAGAGCGAGGAGAATCA
CCAGGTCGTGGTCGTCAGAGAGGGGGCAGCGAGGATTGTGGCAGCAGCAA
AAGCGGGGGGACCGTCGATGGTTACGGAAAAGGATCGCTTGTTAGGGTAG
back to top
Synonyms
Publications