NO03G05560.1, NO03G05560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05560.1
Unique NameNO03G05560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1306
Alignment locationchr3:1595202..1596912 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1595202..1596912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05560.1 vs.
Match: EWM30026.1 (hypothetical protein Naga_100346g7 [Nannochloropsis gaditana])

HSP 1 Score: 303.5 bits (776), Expect = 5.900e-79
Identity = 157/245 (64.08%), Postives = 185/245 (75.51%), Query Frame = 0 
Query:    1 MPSIYELKKTLGLKAGEVLSDGYVVKDVEATMDEKKPRELYNFKVHLWLSPPSS-----------HLPGQKRSHVMCNNLLEDAKQALLQTAEERKIMYSSYGSPYEMHLEHIRAISSGLMQQEQ---EEKGEYQKQEWQEDEDAIGLIEVHALAVAKRRRDLPRLSELEKGTSGNEEEAADDEMKRQGYRIVKAHFKSGHCPLCGNEVAPGEHIAKPKEDRSRGGWAHSTCLANCPEMPMTPTK 232
            MPSIYELKK+L LK+GEVL  G++VKDVEATMDEKKPRELYNFKVHLW+SPPSS             PG KR  V+    LE A++AL+QTAEER+IMYSSYGSPYE+HLEH++A  +G  +QE+     KGE    E +      GLIE+HALAVAKRRRDLPRLS+   GTS  EE AADD+MKR+G+R+VKAHFKS HCP CG+E  PGEHIAKP+++ +RGGWAHSTCLA   E P TPTK
Sbjct:    1 MPSIYELKKSLSLKSGEVLGTGFIVKDVEATMDEKKPRELYNFKVHLWVSPPSSSSSTTKKHSTRRSPGAKRRKVLDKADLEGAEKALIQTAEERQIMYSSYGSPYEVHLEHVKATPAGEGRQEKVAGTRKGEESAIEQE------GLIEIHALAVAKRRRDLPRLSDTGHGTSEEEEAAADDDMKRRGFRVVKAHFKSSHCPECGHEFIPGEHIAKPQDEHNRGGWAHSTCLAKRLETPQTPTK 239
The following BLAST results are available for this feature:
BLAST of NO03G05560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30026.15.900e-7964.08hypothetical protein Naga_100346g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05560NO03G05560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05560.1NO03G05560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05560.1.cds1NO03G05560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05560.1.cds2NO03G05560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05560.1 ID=NO03G05560.1|Name=NO03G05560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp
GGCGTTGTGGAGGGAAGGAAGCCTTACTACACGGGGGGGAGGAGAGTGCT
CGGTTTGCTTTCGCTGCATTTCCCTTGGCCTAGAGTCACATTATTGGAAA
TGGTCACAAGAAAATATAAAATGCGTGCTGGTACAGAACAGGTGCATGTG
CAGATGTATATGTCCCTTTTTGTCCCCCCCCCATCTGCTCCCCCGAACAG
AACACTGATATTCTTAACTGCAACATTCCCTCCCCACTCAACACATAGGA
AACATACCTACAGTCAAGACAATGCCGTCCATTTACGAGCTTAAGAAGAC
GCTGGGTCTCAAAGCTGGCGAGGTGCTGAGTGACGGCTATGTGGTCAAGG
ACGTCGAGGCCACTATGGACGAGAAAAAGCCGCGTGAGCTCTACAACTTC
AAGGTCCACCTCTGGCTCTCACCTCCCTCGTCACATTTGCCTGGCCAGAA
GCGTAGTCATGTTATGTGTAATAACTTGCTGGAAGACGCAAAGCAAGCTC
TTCTGCAGACGGCGGAGGAGCGGAAGATCATGTATAGTTCTTATGGCTCT
CCTTACGAGATGCACCTGGAGCACATCAGGGCTATATCCTCTGGGCTGAT
GCAGCAAGAGCAGGAAGAAAAAGGGGAATACCAAAAGCAAGAGTGGCAGG
AGGACGAGGATGCGATAGGGCTGATTGAGGTGCATGCTTTGGCGGTGGCC
AAGCGCCGCAGGGACTTACCTCGTCTTTCAGAATTAGAGAAGGGAACGAG
CGGAAATGAAGAGGAGGCGGCAGACGATGAGATGAAGCGACAGGGATATC
GAATAGTGAAGGCACATTTTAAGTCTGGCCATTGCCCTCTTTGCGGGAAT
GAGGTCGCGCCCGGTGAGCATATTGCTAAGCCCAAAGAGGACCGCAGCCG
CGGGGGATGGGCACATTCCACATGCCTCGCCAACTGCCCTGAGATGCCGA
TGACTCCCACGAAAACAATTATGGATGGAGAGGGGGCCATTACGAATATC
AAGGAATGATAAGAATAGAGACGTGAAGGCGGGGAGAGAGGGAGAGAGAT
ACAAGCAAGCGGGTATGAGTGAAGTGGTTGCGAGAGATATAGTGTAAGAG
CTTCTTGAGAAGAGAATGATGAAGAGGGAGAGGAAAAACGTAAGCAGCAT
AGACGAAGATTCGAAGAGTCTTGATTTTAATGCCTGTGTGTGATAACAGA
TACAGAAAAAGTGGGCGTGAGGGTATGTCAGATTGGTCTCAAAAGAGGAA
TCTTTGAGACCCAAAAAATCGAGAATCCATACACGTAGAATCTCTTTCAA
ATTGCC
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protein sequence of NO03G05560.1

>NO03G05560.1-protein ID=NO03G05560.1-protein|Name=NO03G05560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MPSIYELKKTLGLKAGEVLSDGYVVKDVEATMDEKKPRELYNFKVHLWLS
PPSSHLPGQKRSHVMCNNLLEDAKQALLQTAEERKIMYSSYGSPYEMHLE
HIRAISSGLMQQEQEEKGEYQKQEWQEDEDAIGLIEVHALAVAKRRRDLP
RLSELEKGTSGNEEEAADDEMKRQGYRIVKAHFKSGHCPLCGNEVAPGEH
IAKPKEDRSRGGWAHSTCLANCPEMPMTPTKTIMDGEGAITNIKE*
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mRNA from alignment at chr3:1595202..1596912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05560.1 ID=NO03G05560.1|Name=NO03G05560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp|location=Sequence derived from alignment at chr3:1595202..1596912+ (Nannochloropsis oceanica)
GGCGTTGTGGAGGGAAGGAAGCCTTACTACACGGGGGGGAGGAGAGTGCT
CGGTTTGCTTTCGCTGCATTTCCCTTGGCCTAGAGTCACATTATTGGAAA
TGGTCACAAGAAAATATAAAATGCGTGCTGGTACAGAACAGGTGCATGTG
CAGATGTATATGTCCCTTTTTGTCCCCCCCCCATCTGCTCCCCCGAACAG
AACACTGATATTCTTAACTGCAACATTCCCTCCCCACTCAACACATAGGA
AACATACCTACAGTCAAGACAATGCCGTCCATTTACGAGCTTAAGAAGAC
GCTGGGTCTCAAAGCTGGCGAGGTGCTGAGTGACGGCTATGTGGTCAAGG
ACGTCGAGGTTCGTTTTGCTGGGTAGGAAGGGCGGCGTTTTTGGTCATGA
GTGTCTTCAAGCAAGGACGACAAAGAGAATGACAAACTGGCCAAAATCCT
CCCTAAACTGTGAGTAAACCGATCCGTCTAATTCAGAATTTTTTCTGTCG
GATATTTCATTGTCTCCCTTACATGTCCTTCTTACTTATTTTTCGAGGGG
TGGGGATCACGACAAGAAAAGGTTGTGGTGAACAGAGCTATGTGCTTGGG
CGACGAAATTATGTGTCTGTGTATACATTTGAGAGTAGAACTATTGACAA
GCCTTCTCGTGCTCAAAGCCGTTCCACCTTTCACCACTCTCTTGCTTTTG
TCTCCCTACCTCCTTCCGTCTCCCAACTTCTCTGGGTTCTCATTTCCCCC
CCTTTGGTTGCAGGCCACTATGGACGAGAAAAAGCCGCGTGAGCTCTACA
ACTTCAAGGTCCACCTCTGGCTCTCACCTCCCTCGTCACATTTGCCTGGC
CAGAAGCGTAGTCATGTTATGTGTAATAACTTGCTGGAAGACGCAAAGCA
AGCTCTTCTGCAGACGGCGGAGGAGCGGAAGATCATGTATAGTTCTTATG
GCTCTCCTTACGAGATGCACCTGGAGCACATCAGGGCTATATCCTCTGGG
CTGATGCAGCAAGAGCAGGAAGAAAAAGGGGAATACCAAAAGCAAGAGTG
GCAGGAGGACGAGGATGCGATAGGGCTGATTGAGGTGCATGCTTTGGCGG
TGGCCAAGCGCCGCAGGGACTTACCTCGTCTTTCAGAATTAGAGAAGGGA
ACGAGCGGAAATGAAGAGGAGGCGGCAGACGATGAGATGAAGCGACAGGG
ATATCGAATAGTGAAGGCACATTTTAAGTCTGGCCATTGCCCTCTTTGCG
GGAATGAGGTCGCGCCCGGTGAGCATATTGCTAAGCCCAAAGAGGACCGC
AGCCGCGGGGGATGGGCACATTCCACATGCCTCGCCAACTGCCCTGAGAT
GCCGATGACTCCCACGAAAACAATTATGGATGGAGAGGGGGCCATTACGA
ATATCAAGGAATGATAAGAATAGAGACGTGAAGGCGGGGAGAGAGGGAGA
GAGATACAAGCAAGCGGGTATGAGTGAAGTGGTTGCGAGAGATATAGTGT
AAGAGCTTCTTGAGAAGAGAATGATGAAGAGGGAGAGGAAAAACGTAAGC
AGCATAGACGAAGATTCGAAGAGTCTTGATTTTAATGCCTGTGTGTGATA
ACAGATACAGAAAAAGTGGGCGTGAGGGTATGTCAGATTGGTCTCAAAAG
AGGAATCTTTGAGACCCAAAAAATCGAGAATCCATACACGTAGAATCTCT
TTCAAATTGCC
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Coding sequence (CDS) from alignment at chr3:1595202..1596912+

>NO03G05560.1 ID=NO03G05560.1|Name=NO03G05560.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr3:1595202..1596912+ (Nannochloropsis oceanica)
ATGCCGTCCATTTACGAGCTTAAGAAGACGCTGGGTCTCAAAGCTGGCGA
GGTGCTGAGTGACGGCTATGTGGTCAAGGACGTCGAGGCCACTATGGACG
AGAAAAAGCCGCGTGAGCTCTACAACTTCAAGGTCCACCTCTGGCTCTCA
CCTCCCTCGTCACATTTGCCTGGCCAGAAGCGTAGTCATGTTATGTGTAA
TAACTTGCTGGAAGACGCAAAGCAAGCTCTTCTGCAGACGGCGGAGGAGC
GGAAGATCATGTATAGTTCTTATGGCTCTCCTTACGAGATGCACCTGGAG
CACATCAGGGCTATATCCTCTGGGCTGATGCAGCAAGAGCAGGAAGAAAA
AGGGGAATACCAAAAGCAAGAGTGGCAGGAGGACGAGGATGCGATAGGGC
TGATTGAGGTGCATGCTTTGGCGGTGGCCAAGCGCCGCAGGGACTTACCT
CGTCTTTCAGAATTAGAGAAGGGAACGAGCGGAAATGAAGAGGAGGCGGC
AGACGATGAGATGAAGCGACAGGGATATCGAATAGTGAAGGCACATTTTA
AGTCTGGCCATTGCCCTCTTTGCGGGAATGAGGTCGCGCCCGGTGAGCAT
ATTGCTAAGCCCAAAGAGGACCGCAGCCGCGGGGGATGGGCACATTCCAC
ATGCCTCGCCAACTGCCCTGAGATGCCGATGACTCCCACGAAAACAATTA
TGGATGGAGAGGGGGCCATTACGAATATCAAGGAATGA
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Synonyms
Publications