NO03G05550.1, NO03G05550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05550.1
Unique NameNO03G05550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1737
Alignment locationchr3:1592787..1594523 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1592787..1594523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05550.1 vs.
Match: XP_005853887.1 (hypothetical protein NGA_0429800 [Nannochloropsis gaditana CCMP526]; EKU22475.1 hypothetical protein NGA_0429800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 816.2 bits (2107), Expect = 6.300e-233
Identity = 436/563 (77.44%), Postives = 476/563 (84.55%), Query Frame = 0 
Query:   24 NTSLALLRELLMNEGEDTEAAITTNSASKNT-SALLHQLDIGGLDGPVITLLRRALASRLLSPDMAKRLGVKHVRGILLHGPPGTGKTLVARQLAALLHAAKPKLISGPELLSMWVGKSEENIRAIFQDAEQEFKEKGSASALHVIIFDEIDALTRKRGTLRDSSGVLDSCVNQLLSKIDGLAAFDNILCIGTTNRKDLLDDALLRPGRLEVHVEVGLPDEAGRAQIFHIHTRGFANEGCLSADVDFHQLARLTPNFTGAEIEGVVKGGLSFALQRQVSRK---HDVLDADVIKSDLSS--SKLNLCMLDLLRALREAKPHFGAASQQWATHQRMGFVAFRPEVPTLVQGLLTTLDQARNGGQLPLVTILLQGPPGAGKSAVLAHLGSLAGGFTFRRHLTGQELASLGEEAACDTLAQAVQDAHQCPHSLLMLDDLEGLSQYVPLQGGRVSLPRLHSLLAVLGRTPAKMSRVGVVLATTSLDQKTLCALGLWEKFSVRVALPLVETAGHVAALLGKGEGAGKSTMLRKEENGPWTVRELLQRQAL------NTEEEKKIEEDE 575
            N SL LLRELL NEGED       +  S  T SALLHQL IGGLDGPVITLLRRALASRLLSPDMAKRLGVKHVRGILL+GPPGTGKTLVARQLAALLHA +PKL+SGPELLSMWVGKSEENIR+IF DAEQEFKEKGS SALHVIIFDEIDALTRKRG+LRDSSGV+DSCVNQLLSKIDGLAAFDNILCIGTTNRKDLLDDALLRPGRLEVHVEVGLPDEAGRAQIF +HT+GFA EG L+ DVDF QLARLTPNFTGAEIEGVVKGGLSFALQRQ+S K    +   +     DLSS  + L L M DLLRALREAKPHFGA SQQWATHQR+GF+AFRPEVP L+Q LL+ L++AR+ GQLPLVTILLQGP GAGK+AVLA LGSLA G+TFRRHLTGQELASLGEE+ACD + QAV+DAHQCP SLLMLDDLEGL QYVPLQGGRVSLPRLH+LL+VLGR P K SRV VVLATTSLD+ TL ALGLWE+F ++  LPLVETA HVA L+ KG G G S        GPWTVRELLQ QAL      + E++ KI++++
Sbjct:   11 NASLVLLRELLKNEGEDNIGCRDPSDISPTTTSALLHQLGIGGLDGPVITLLRRALASRLLSPDMAKRLGVKHVRGILLYGPPGTGKTLVARQLAALLHAREPKLVSGPELLSMWVGKSEENIRSIFADAEQEFKEKGSHSALHVIIFDEIDALTRKRGSLRDSSGVMDSCVNQLLSKIDGLAAFDNILCIGTTNRKDLLDDALLRPGRLEVHVEVGLPDEAGRAQIFQVHTKGFATEGLLARDVDFPQLARLTPNFTGAEIEGVVKGGLSFALQRQISTKKKTEEECPSRTSYDDLSSGFAPLRLSMFDLLRALREAKPHFGAKSQQWATHQRLGFIAFRPEVPELMQRLLSILERARHDGQLPLVTILLQGPAGAGKTAVLARLGSLAEGYTFRRHLTGQELASLGEESACDAVVQAVEDAHQCPRSLLMLDDLEGLMQYVPLQGGRVSLPRLHTLLSVLGRPPVKQSRVCVVLATTSLDEPTLRALGLWERFGIKEVLPLVETADHVAVLM-KGLG-GASQPPGGARKGPWTVRELLQEQALYAQHRKHDEKQNKIDDEQ 571
The following BLAST results are available for this feature:
BLAST of NO03G05550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853887.16.300e-23377.44hypothetical protein NGA_0429800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05550NO03G05550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05550.1NO03G05550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05550.1.cds1NO03G05550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05550.1 ID=NO03G05550.1|Name=NO03G05550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
ATGGCACGCGGCAAACATGCCATGGCTCGTACACCCCAAGCTCCCCAAAC
TCCCACTTCTCCGACACCGAACACATCCCTGGCCCTCCTGCGCGAGCTTC
TCATGAATGAAGGTGAGGATACCGAAGCCGCAATCACTACCAACTCTGCC
TCCAAGAACACATCTGCACTCCTACATCAGCTGGACATTGGTGGCCTGGA
TGGCCCCGTTATAACCTTGCTGCGCCGGGCCTTGGCATCGCGCCTCCTGT
CTCCGGACATGGCCAAGCGACTTGGCGTCAAGCACGTCCGGGGCATTTTG
TTACACGGGCCACCAGGCACGGGTAAGACGCTCGTGGCACGTCAACTCGC
CGCATTACTGCATGCTGCTAAACCTAAACTCATTTCTGGGCCAGAGCTTC
TGTCCATGTGGGTGGGTAAGAGCGAAGAGAATATCCGGGCCATTTTCCAG
GACGCTGAACAAGAATTCAAGGAGAAAGGCAGCGCCTCGGCCTTGCACGT
AATCATATTTGACGAGATAGACGCCTTGACGCGAAAGCGGGGGACGCTGC
GGGATTCGTCGGGAGTTCTGGACAGCTGCGTTAACCAGCTTCTTTCCAAG
ATCGACGGGTTGGCGGCCTTTGACAACATATTGTGCATCGGCACCACCAA
CCGGAAAGACCTCCTGGATGACGCACTCTTACGCCCAGGCCGTCTTGAGG
TCCATGTGGAGGTTGGTCTACCCGACGAAGCAGGCCGGGCACAGATATTT
CATATTCATACCCGGGGTTTTGCCAACGAGGGTTGCTTGTCCGCCGACGT
AGACTTCCACCAGCTCGCACGATTGACGCCTAATTTTACTGGCGCGGAGA
TCGAGGGCGTCGTCAAGGGAGGCTTGTCTTTTGCCTTACAGCGACAGGTC
AGTCGTAAGCATGATGTGCTGGATGCTGATGTAATTAAAAGCGACTTATC
ATCGTCGAAATTGAACTTGTGTATGCTTGACTTGCTGCGGGCGCTCCGCG
AAGCAAAGCCCCACTTTGGCGCTGCGAGCCAGCAGTGGGCCACGCACCAA
CGCATGGGGTTTGTGGCCTTCCGCCCCGAGGTACCGACCCTCGTCCAGGG
CCTACTAACTACCCTCGATCAAGCTCGTAACGGTGGCCAGCTGCCCCTTG
TGACGATTCTTCTTCAAGGCCCTCCCGGCGCAGGGAAGTCGGCTGTGCTT
GCTCACCTTGGCTCCTTGGCCGGCGGGTTTACCTTTCGTCGACATCTCAC
GGGGCAAGAACTTGCGAGCTTGGGAGAAGAAGCCGCATGCGACACACTAG
CCCAAGCTGTACAGGATGCGCACCAATGCCCACATTCCCTGCTGATGCTG
GACGACTTGGAGGGCCTTTCGCAGTACGTGCCGCTACAAGGCGGTCGAGT
TTCTTTGCCACGTCTTCATAGCCTCCTTGCAGTCCTCGGTCGTACCCCTG
CAAAAATGTCCCGAGTGGGGGTAGTGCTGGCTACCACATCGCTGGACCAA
AAGACGCTGTGTGCCCTTGGTCTATGGGAGAAATTTAGTGTCCGGGTAGC
TTTGCCTTTGGTTGAGACGGCGGGACATGTGGCGGCGTTGCTGGGCAAGG
GTGAGGGAGCTGGGAAGAGCACAATGCTGCGAAAGGAAGAGAATGGACCA
TGGACGGTGCGGGAATTGTTGCAACGACAAGCGCTCAATACGGAGGAGGA
AAAGAAAATAGAGGAAGACGAAGGGAGCCATAATTAA
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protein sequence of NO03G05550.1

>NO03G05550.1-protein ID=NO03G05550.1-protein|Name=NO03G05550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp
MARGKHAMARTPQAPQTPTSPTPNTSLALLRELLMNEGEDTEAAITTNSA
SKNTSALLHQLDIGGLDGPVITLLRRALASRLLSPDMAKRLGVKHVRGIL
LHGPPGTGKTLVARQLAALLHAAKPKLISGPELLSMWVGKSEENIRAIFQ
DAEQEFKEKGSASALHVIIFDEIDALTRKRGTLRDSSGVLDSCVNQLLSK
IDGLAAFDNILCIGTTNRKDLLDDALLRPGRLEVHVEVGLPDEAGRAQIF
HIHTRGFANEGCLSADVDFHQLARLTPNFTGAEIEGVVKGGLSFALQRQV
SRKHDVLDADVIKSDLSSSKLNLCMLDLLRALREAKPHFGAASQQWATHQ
RMGFVAFRPEVPTLVQGLLTTLDQARNGGQLPLVTILLQGPPGAGKSAVL
AHLGSLAGGFTFRRHLTGQELASLGEEAACDTLAQAVQDAHQCPHSLLML
DDLEGLSQYVPLQGGRVSLPRLHSLLAVLGRTPAKMSRVGVVLATTSLDQ
KTLCALGLWEKFSVRVALPLVETAGHVAALLGKGEGAGKSTMLRKEENGP
WTVRELLQRQALNTEEEKKIEEDEGSHN*
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mRNA from alignment at chr3:1592787..1594523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05550.1 ID=NO03G05550.1|Name=NO03G05550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at chr3:1592787..1594523- (Nannochloropsis oceanica)
ATGGCACGCGGCAAACATGCCATGGCTCGTACACCCCAAGCTCCCCAAAC
TCCCACTTCTCCGACACCGAACACATCCCTGGCCCTCCTGCGCGAGCTTC
TCATGAATGAAGGTGAGGATACCGAAGCCGCAATCACTACCAACTCTGCC
TCCAAGAACACATCTGCACTCCTACATCAGCTGGACATTGGTGGCCTGGA
TGGCCCCGTTATAACCTTGCTGCGCCGGGCCTTGGCATCGCGCCTCCTGT
CTCCGGACATGGCCAAGCGACTTGGCGTCAAGCACGTCCGGGGCATTTTG
TTACACGGGCCACCAGGCACGGGTAAGACGCTCGTGGCACGTCAACTCGC
CGCATTACTGCATGCTGCTAAACCTAAACTCATTTCTGGGCCAGAGCTTC
TGTCCATGTGGGTGGGTAAGAGCGAAGAGAATATCCGGGCCATTTTCCAG
GACGCTGAACAAGAATTCAAGGAGAAAGGCAGCGCCTCGGCCTTGCACGT
AATCATATTTGACGAGATAGACGCCTTGACGCGAAAGCGGGGGACGCTGC
GGGATTCGTCGGGAGTTCTGGACAGCTGCGTTAACCAGCTTCTTTCCAAG
ATCGACGGGTTGGCGGCCTTTGACAACATATTGTGCATCGGCACCACCAA
CCGGAAAGACCTCCTGGATGACGCACTCTTACGCCCAGGCCGTCTTGAGG
TCCATGTGGAGGTTGGTCTACCCGACGAAGCAGGCCGGGCACAGATATTT
CATATTCATACCCGGGGTTTTGCCAACGAGGGTTGCTTGTCCGCCGACGT
AGACTTCCACCAGCTCGCACGATTGACGCCTAATTTTACTGGCGCGGAGA
TCGAGGGCGTCGTCAAGGGAGGCTTGTCTTTTGCCTTACAGCGACAGGTC
AGTCGTAAGCATGATGTGCTGGATGCTGATGTAATTAAAAGCGACTTATC
ATCGTCGAAATTGAACTTGTGTATGCTTGACTTGCTGCGGGCGCTCCGCG
AAGCAAAGCCCCACTTTGGCGCTGCGAGCCAGCAGTGGGCCACGCACCAA
CGCATGGGGTTTGTGGCCTTCCGCCCCGAGGTACCGACCCTCGTCCAGGG
CCTACTAACTACCCTCGATCAAGCTCGTAACGGTGGCCAGCTGCCCCTTG
TGACGATTCTTCTTCAAGGCCCTCCCGGCGCAGGGAAGTCGGCTGTGCTT
GCTCACCTTGGCTCCTTGGCCGGCGGGTTTACCTTTCGTCGACATCTCAC
GGGGCAAGAACTTGCGAGCTTGGGAGAAGAAGCCGCATGCGACACACTAG
CCCAAGCTGTACAGGATGCGCACCAATGCCCACATTCCCTGCTGATGCTG
GACGACTTGGAGGGCCTTTCGCAGTACGTGCCGCTACAAGGCGGTCGAGT
TTCTTTGCCACGTCTTCATAGCCTCCTTGCAGTCCTCGGTCGTACCCCTG
CAAAAATGTCCCGAGTGGGGGTAGTGCTGGCTACCACATCGCTGGACCAA
AAGACGCTGTGTGCCCTTGGTCTATGGGAGAAATTTAGTGTCCGGGTAGC
TTTGCCTTTGGTTGAGACGGCGGGACATGTGGCGGCGTTGCTGGGCAAGG
GTGAGGGAGCTGGGAAGAGCACAATGCTGCGAAAGGAAGAGAATGGACCA
TGGACGGTGCGGGAATTGTTGCAACGACAAGCGCTCAATACGGAGGAGGA
AAAGAAAATAGAGGAAGACGAAGGGAGCCATAATTAA
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Coding sequence (CDS) from alignment at chr3:1592787..1594523-

>NO03G05550.1 ID=NO03G05550.1|Name=NO03G05550.1|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at chr3:1592787..1594523- (Nannochloropsis oceanica)
ATGGCACGCGGCAAACATGCCATGGCTCGTACACCCCAAGCTCCCCAAAC
TCCCACTTCTCCGACACCGAACACATCCCTGGCCCTCCTGCGCGAGCTTC
TCATGAATGAAGGTGAGGATACCGAAGCCGCAATCACTACCAACTCTGCC
TCCAAGAACACATCTGCACTCCTACATCAGCTGGACATTGGTGGCCTGGA
TGGCCCCGTTATAACCTTGCTGCGCCGGGCCTTGGCATCGCGCCTCCTGT
CTCCGGACATGGCCAAGCGACTTGGCGTCAAGCACGTCCGGGGCATTTTG
TTACACGGGCCACCAGGCACGGGTAAGACGCTCGTGGCACGTCAACTCGC
CGCATTACTGCATGCTGCTAAACCTAAACTCATTTCTGGGCCAGAGCTTC
TGTCCATGTGGGTGGGTAAGAGCGAAGAGAATATCCGGGCCATTTTCCAG
GACGCTGAACAAGAATTCAAGGAGAAAGGCAGCGCCTCGGCCTTGCACGT
AATCATATTTGACGAGATAGACGCCTTGACGCGAAAGCGGGGGACGCTGC
GGGATTCGTCGGGAGTTCTGGACAGCTGCGTTAACCAGCTTCTTTCCAAG
ATCGACGGGTTGGCGGCCTTTGACAACATATTGTGCATCGGCACCACCAA
CCGGAAAGACCTCCTGGATGACGCACTCTTACGCCCAGGCCGTCTTGAGG
TCCATGTGGAGGTTGGTCTACCCGACGAAGCAGGCCGGGCACAGATATTT
CATATTCATACCCGGGGTTTTGCCAACGAGGGTTGCTTGTCCGCCGACGT
AGACTTCCACCAGCTCGCACGATTGACGCCTAATTTTACTGGCGCGGAGA
TCGAGGGCGTCGTCAAGGGAGGCTTGTCTTTTGCCTTACAGCGACAGGTC
AGTCGTAAGCATGATGTGCTGGATGCTGATGTAATTAAAAGCGACTTATC
ATCGTCGAAATTGAACTTGTGTATGCTTGACTTGCTGCGGGCGCTCCGCG
AAGCAAAGCCCCACTTTGGCGCTGCGAGCCAGCAGTGGGCCACGCACCAA
CGCATGGGGTTTGTGGCCTTCCGCCCCGAGGTACCGACCCTCGTCCAGGG
CCTACTAACTACCCTCGATCAAGCTCGTAACGGTGGCCAGCTGCCCCTTG
TGACGATTCTTCTTCAAGGCCCTCCCGGCGCAGGGAAGTCGGCTGTGCTT
GCTCACCTTGGCTCCTTGGCCGGCGGGTTTACCTTTCGTCGACATCTCAC
GGGGCAAGAACTTGCGAGCTTGGGAGAAGAAGCCGCATGCGACACACTAG
CCCAAGCTGTACAGGATGCGCACCAATGCCCACATTCCCTGCTGATGCTG
GACGACTTGGAGGGCCTTTCGCAGTACGTGCCGCTACAAGGCGGTCGAGT
TTCTTTGCCACGTCTTCATAGCCTCCTTGCAGTCCTCGGTCGTACCCCTG
CAAAAATGTCCCGAGTGGGGGTAGTGCTGGCTACCACATCGCTGGACCAA
AAGACGCTGTGTGCCCTTGGTCTATGGGAGAAATTTAGTGTCCGGGTAGC
TTTGCCTTTGGTTGAGACGGCGGGACATGTGGCGGCGTTGCTGGGCAAGG
GTGAGGGAGCTGGGAAGAGCACAATGCTGCGAAAGGAAGAGAATGGACCA
TGGACGGTGCGGGAATTGTTGCAACGACAAGCGCTCAATACGGAGGAGGA
AAAGAAAATAGAGGAAGACGAAGGGAGCCATAATTAA
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Synonyms
Publications