NO03G05510.1, NO03G05510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05510.1
Unique NameNO03G05510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1422
Alignment locationchr3:1581265..1582825 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1581265..1582825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05510.1 vs.
Match: XP_005854463.1 (carboxyl-terminal processing protease [Nannochloropsis gaditana CCMP526]; EKU21896.1 carboxyl-terminal processing protease [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 692.6 bits (1786), Expect = 8.700e-196
Identity = 359/446 (80.49%), Postives = 388/446 (87.00%), Query Frame = 0 
Query:   23 ETLHRFSKLAPTFLSLLLGVRPLFALAPPGYAAAEAATTTTTTTTDTSPASSVTVPTFSEDQAASDSDDLFDEVWKLTSKFYLDRSFGGSDWGKARVDLRAQSNLPGDSASETKATKKLLKKLGDKYTQLLSPYMYTEMSRFDPIGAGFMLSIDDDGYFCVSSDPREGSVAAAQNVQKGDKILEIEGVAIKGKSVFDAVDLITKEDKADVRLTIQSKLHPGTAPRLLVLPRDFNAVSNPVTKAQLTLTEDGRKVGYLKLREFNSLAKEKVREALSSLEEQGAEAYIVDLRGNPGGSVQAAVSVASLFLPEDKIVTFIQDATGNRLPLKTQGATALPPSDPIVVWTDRKSASASEILASALHDNCRAVLMGQRTFGKGLVQGVFGLTDGKGLVMTVAKYETPRGASIQGTGILPDIEAVIPSNILGDQDVSVVRKEDFGLKDGMCVE 469
            ++L   SKLAP F  L LGVRPL  L    YA   +  TT TT T   P  SVT P F   QAA+D+DDLFDEVWKLTSKFYLDRSFGG+DWG+AR DLR+Q  LPGDSASET ATKKLLKKLGDKYTQLLSPYMYT MSRFDPIGAGFMLS+DDDGYFCVSSDPR+G+ AA + V+KGDKILEIEGVAIKGKSVFDAVDLITKEDK DVRLTIQSK  P  APR+L LPR+FN VSNPVTK QLT  EDGRKVGY+KLREFNSLAKEKVREAL+SLE QGAEAY++DLRGNPGGSVQAAVSVASLFLPED+IVTFIQDATGN+LPLKTQGA A+ P DP+VVWTDRKSASASEILASALHDNCRAVLMGQRTFGKGLVQGVFGL DGKGLVMTVAKYETPRGASIQGTGI PDIE VIPS+ILG+QD+SVVR EDF LKD +C++
Sbjct:   92 KSLQALSKLAPAFWGLFLGVRPLHPLPQAAYAGPSSPATTGTTATP--PVFSVTSPNFPPTQAAADTDDLFDEVWKLTSKFYLDRSFGGNDWGQARADLRSQGKLPGDSASETTATKKLLKKLGDKYTQLLSPYMYTAMSRFDPIGAGFMLSVDDDGYFCVSSDPRDGTRAAKERVEKGDKILEIEGVAIKGKSVFDAVDLITKEDKTDVRLTIQSKRDPAAAPRVLTLPREFNTVSNPVTKTQLTTAEDGRKVGYVKLREFNSLAKEKVREALTSLESQGAEAYVIDLRGNPGGSVQAAVSVASLFLPEDQIVTFIQDATGNKLPLKTQGAAAV-PRDPLVVWTDRKSASASEILASALHDNCRAVLMGQRTFGKGLVQGVFGLNDGKGLVMTVAKYETPRGASIQGTGIFPDIETVIPSSILGEQDISVVRGEDFSLKDRICLD 534
The following BLAST results are available for this feature:
BLAST of NO03G05510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854463.18.700e-19680.49carboxyl-terminal processing protease [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05510NO03G05510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05510.1NO03G05510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05510.1.cds1NO03G05510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05510.1.cds2NO03G05510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05510.1 ID=NO03G05510.1|Name=NO03G05510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
ATGGAGCAATCAGGTCTCCACGGAGAAGTGAACCAGCAGCCCTCGCACTC
CAGAGTGTGGGCCTTGGAGACGCTCCACCGCTTCAGTAAGCTTGCACCTA
CCTTTCTCAGTCTCTTGTTAGGCGTTCGCCCCCTTTTTGCCCTCGCTCCT
CCCGGGTACGCCGCTGCGGAAGCTGCTACTACAACTACCACCACTACCAC
CGATACTTCTCCCGCTTCCTCCGTCACTGTCCCCACGTTCTCCGAAGACC
AAGCCGCCTCCGACTCAGACGATTTATTCGACGAGGTGTGGAAGCTGACG
TCGAAATTCTATCTCGATCGTTCCTTTGGTGGGAGTGATTGGGGCAAGGC
GCGGGTAGACCTGAGGGCCCAAAGCAACCTCCCCGGGGATAGCGCCAGCG
AGACAAAAGCGACCAAGAAACTTTTGAAGAAACTAGGGGACAAGTACACC
CAGCTCTTGTCGCCGTACATGTACACGGAGATGAGTCGATTTGACCCAAT
CGGGGCGGGCTTTATGCTGTCTATAGATGATGACGGCTACTTCTGTGTCT
CCTCCGACCCACGGGAGGGTTCGGTGGCTGCCGCACAAAATGTGCAAAAG
GGCGACAAAATACTCGAAATTGAGGGCGTGGCTATCAAGGGTAAGAGCGT
CTTTGATGCCGTGGACCTGATCACGAAAGAGGATAAGGCGGATGTGCGCT
TGACGATTCAGTCGAAGCTTCACCCTGGGACGGCTCCGCGTCTGTTGGTC
TTGCCTAGGGATTTCAATGCTGTGTCGAACCCAGTGACCAAAGCCCAACT
CACCCTCACGGAAGACGGGCGCAAAGTCGGTTACCTCAAATTGAGAGAGT
TCAATTCCCTGGCCAAGGAGAAGGTGCGTGAGGCCCTATCTTCACTTGAA
GAACAAGGTGCCGAGGCCTACATCGTTGACCTGAGGGGTAACCCGGGGGG
GTCCGTCCAAGCAGCTGTCTCGGTCGCCTCCCTCTTTTTGCCGGAGGATA
AAATAGTCACGTTCATTCAGGATGCTACTGGGAACAGGCTCCCACTCAAG
ACACAGGGCGCAACAGCCCTTCCCCCTTCCGATCCCATCGTAGTGTGGAC
AGATCGGAAATCGGCAAGTGCATCGGAGATTCTGGCAAGCGCGTTGCACG
ACAACTGTCGGGCGGTGTTGATGGGGCAGAGGACGTTTGGGAAGGGGCTG
GTGCAGGGTGTGTTTGGGCTGACGGATGGAAAGGGCCTGGTGATGACAGT
GGCCAAGTATGAGACGCCAAGGGGGGCGTCGATACAGGGAACGGGCATCT
TGCCCGACATCGAGGCGGTGATCCCTAGCAATATTTTAGGTGACCAGGAT
GTGAGCGTGGTGCGGAAAGAGGACTTTGGCTTGAAGGACGGGATGTGCGT
GGAGGCAATGGCATCGAAATGA
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protein sequence of NO03G05510.1

>NO03G05510.1-protein ID=NO03G05510.1-protein|Name=NO03G05510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MEQSGLHGEVNQQPSHSRVWALETLHRFSKLAPTFLSLLLGVRPLFALAP
PGYAAAEAATTTTTTTTDTSPASSVTVPTFSEDQAASDSDDLFDEVWKLT
SKFYLDRSFGGSDWGKARVDLRAQSNLPGDSASETKATKKLLKKLGDKYT
QLLSPYMYTEMSRFDPIGAGFMLSIDDDGYFCVSSDPREGSVAAAQNVQK
GDKILEIEGVAIKGKSVFDAVDLITKEDKADVRLTIQSKLHPGTAPRLLV
LPRDFNAVSNPVTKAQLTLTEDGRKVGYLKLREFNSLAKEKVREALSSLE
EQGAEAYIVDLRGNPGGSVQAAVSVASLFLPEDKIVTFIQDATGNRLPLK
TQGATALPPSDPIVVWTDRKSASASEILASALHDNCRAVLMGQRTFGKGL
VQGVFGLTDGKGLVMTVAKYETPRGASIQGTGILPDIEAVIPSNILGDQD
VSVVRKEDFGLKDGMCVEAMASK*
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mRNA from alignment at chr3:1581265..1582825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05510.1 ID=NO03G05510.1|Name=NO03G05510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1561bp|location=Sequence derived from alignment at chr3:1581265..1582825- (Nannochloropsis oceanica)
ATGGAGCAATCAGGTCTCCACGGAGAAGTGAACCAGCAGCCCTCGCACTC
CAGAGTGTGGGCCTTGGAGACGCTCCACCGCTTCAGTAAGCTTGCACCTA
CCTTTCTCAGTCTCTTGTTAGGCGTTCGCCCCCTTTTTGCCCTCGCTCCT
CCCGGGTACGCCGCTGCGGAAGCTGCTACTACAACTACCACCACTACCAC
CGATACTTCTCCCGCTTCCTCCGTCACTGTCCCCACGTTCTCCGAAGACC
AAGCCGCCTCCGACTCAGACGATTTATTCGACGAGGTGTGGAAGCTGACG
TCGAAATTCTATCTCGATCGTTCCTTTGGTGGGAGTGATTGGGGCAAGGC
GCGGGTAGACCTGAGGGCCCAAAGCAACCTCCCCGGGGATAGCGCCAGCG
AGACAAAAGCGACCAAGAAACTTTTGAAGAAACTAGGGGACAAGTACACC
CAGCTCTTGTCGCCGTACATGTACACGGAGATGAGTCGATTTGACCCAAT
CGGGGCGGGCTTTATGCTGTCTATAGATGATGACGGCTACTTCTGTGTCT
CCTCCGACCCACGGGAGGGTTCGGTGGCTGCCGCACAAAATGTGCAAAAG
GGCGACAAAATACTCGAAATTGAGGGCGTGGCTATCAAGGGTAAGAGCGT
CTTTGATGCCGTGGACCTGATCACGAAAGAGGATAAGGCGGATGTGCGCT
TGACGATTCAGTCGAAGCTTCACCCTGGGACGGCTCCGCGTCTGTTGGTC
TTGCCTAGGGATTTCAATGCTGTGTCGAACCCAGGTGAGGGAAGAAGGGA
TAAGGAGAACAAGCGATCGAGTAGGAATTTGAAGATATGTGCTTCCCACT
GTATCCATCAATTTAAATTGCTCACAGCTGTCGCTCCCTCCCTCTCTCCC
TCCTTCCCTCCTCACCACACAAGTGACCAAAGCCCAACTCACCCTCACGG
AAGACGGGCGCAAAGTCGGTTACCTCAAATTGAGAGAGTTCAATTCCCTG
GCCAAGGAGAAGGTGCGTGAGGCCCTATCTTCACTTGAAGAACAAGGTGC
CGAGGCCTACATCGTTGACCTGAGGGGTAACCCGGGGGGGTCCGTCCAAG
CAGCTGTCTCGGTCGCCTCCCTCTTTTTGCCGGAGGATAAAATAGTCACG
TTCATTCAGGATGCTACTGGGAACAGGCTCCCACTCAAGACACAGGGCGC
AACAGCCCTTCCCCCTTCCGATCCCATCGTAGTGTGGACAGATCGGAAAT
CGGCAAGTGCATCGGAGATTCTGGCAAGCGCGTTGCACGACAACTGTCGG
GCGGTGTTGATGGGGCAGAGGACGTTTGGGAAGGGGCTGGTGCAGGGTGT
GTTTGGGCTGACGGATGGAAAGGGCCTGGTGATGACAGTGGCCAAGTATG
AGACGCCAAGGGGGGCGTCGATACAGGGAACGGGCATCTTGCCCGACATC
GAGGCGGTGATCCCTAGCAATATTTTAGGTGACCAGGATGTGAGCGTGGT
GCGGAAAGAGGACTTTGGCTTGAAGGACGGGATGTGCGTGGAGGCAATGG
CATCGAAATGA
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Coding sequence (CDS) from alignment at chr3:1581265..1582825-

>NO03G05510.1 ID=NO03G05510.1|Name=NO03G05510.1|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr3:1581265..1582825- (Nannochloropsis oceanica)
ATGGAGCAATCAGGTCTCCACGGAGAAGTGAACCAGCAGCCCTCGCACTC
CAGAGTGTGGGCCTTGGAGACGCTCCACCGCTTCAGTAAGCTTGCACCTA
CCTTTCTCAGTCTCTTGTTAGGCGTTCGCCCCCTTTTTGCCCTCGCTCCT
CCCGGGTACGCCGCTGCGGAAGCTGCTACTACAACTACCACCACTACCAC
CGATACTTCTCCCGCTTCCTCCGTCACTGTCCCCACGTTCTCCGAAGACC
AAGCCGCCTCCGACTCAGACGATTTATTCGACGAGGTGTGGAAGCTGACG
TCGAAATTCTATCTCGATCGTTCCTTTGGTGGGAGTGATTGGGGCAAGGC
GCGGGTAGACCTGAGGGCCCAAAGCAACCTCCCCGGGGATAGCGCCAGCG
AGACAAAAGCGACCAAGAAACTTTTGAAGAAACTAGGGGACAAGTACACC
CAGCTCTTGTCGCCGTACATGTACACGGAGATGAGTCGATTTGACCCAAT
CGGGGCGGGCTTTATGCTGTCTATAGATGATGACGGCTACTTCTGTGTCT
CCTCCGACCCACGGGAGGGTTCGGTGGCTGCCGCACAAAATGTGCAAAAG
GGCGACAAAATACTCGAAATTGAGGGCGTGGCTATCAAGGGTAAGAGCGT
CTTTGATGCCGTGGACCTGATCACGAAAGAGGATAAGGCGGATGTGCGCT
TGACGATTCAGTCGAAGCTTCACCCTGGGACGGCTCCGCGTCTGTTGGTC
TTGCCTAGGGATTTCAATGCTGTGTCGAACCCAGTGACCAAAGCCCAACT
CACCCTCACGGAAGACGGGCGCAAAGTCGGTTACCTCAAATTGAGAGAGT
TCAATTCCCTGGCCAAGGAGAAGGTGCGTGAGGCCCTATCTTCACTTGAA
GAACAAGGTGCCGAGGCCTACATCGTTGACCTGAGGGGTAACCCGGGGGG
GTCCGTCCAAGCAGCTGTCTCGGTCGCCTCCCTCTTTTTGCCGGAGGATA
AAATAGTCACGTTCATTCAGGATGCTACTGGGAACAGGCTCCCACTCAAG
ACACAGGGCGCAACAGCCCTTCCCCCTTCCGATCCCATCGTAGTGTGGAC
AGATCGGAAATCGGCAAGTGCATCGGAGATTCTGGCAAGCGCGTTGCACG
ACAACTGTCGGGCGGTGTTGATGGGGCAGAGGACGTTTGGGAAGGGGCTG
GTGCAGGGTGTGTTTGGGCTGACGGATGGAAAGGGCCTGGTGATGACAGT
GGCCAAGTATGAGACGCCAAGGGGGGCGTCGATACAGGGAACGGGCATCT
TGCCCGACATCGAGGCGGTGATCCCTAGCAATATTTTAGGTGACCAGGAT
GTGAGCGTGGTGCGGAAAGAGGACTTTGGCTTGAAGGACGGGATGTGCGT
GGAGGCAATGGCATCGAAATGA
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Synonyms
Publications