NO03G05500.1, NO03G05500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05500.1
Unique NameNO03G05500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1404
Alignment locationchr3:1579381..1580784 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1579381..1580784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05500.1 vs.
Match: EWM30020.1 (formamidopyrimidine-dna glycosylase [Nannochloropsis gaditana])

HSP 1 Score: 464.2 bits (1193), Expect = 4.900e-127
Identity = 251/453 (55.41%), Postives = 308/453 (67.99%), Query Frame = 0 
Query:    1 MPELPEVAALVAALENEAKSKRLLRVLTKEAGGGPRDGLYDDLVFSGTEEQEMHRVLEGRALTGVGRKGKHLWMELSLLPSPPSTSAAFGVGNGRRGGDEGARNTSTLTTSSAPQEDKRFVLFHMGMTGSLLFQHVAIPQYRSFSLDVSKGWPPKFCKAQFIFGNC-EEGKDDEAIQLAFCDQRRWGRVQLLPAGVKDPRMEAPLKELAPDAWKERPSLQVFRDKLKETDIAIKAALLDQGRVLSGLGNWVCDEVLFQAKVDPARRCKALTEGDVRRVWESVDYVCATACAANARSEGFPTGWLFHYRWAKTKKDMAGAKGPEGRRMVFETVGGRTTAIVPSVQRVRRGGDEEKEMGEPGEDGAGVGRGKRKQKEEEDEFEQIMTKKKISKGKRCVKEEVMEEEVGIGRGDEKAESPSIISERAIKVIKMEKDVKMNIPASEKTT--TPRRSS 451
            MPELPEVAAL +A++ E   +RL+ VLTKE GGGPR GLYDDLVF   +EQE+HR +EGR LT VGR+GKHLWMEL    S PS S     G   RG    ++ + T+       +D RFVLFHMGMTGSL+FQHVAIPQYRSF+LDV++GWPPK CKA+F+F    +EG  +  ++LAFCDQRRWGR+Q+LPAGV DPR E+PLKELAPDAW ERP L VF ++LK TDI +KAALLDQ R++ G+GNWV DEVL+QA  DPA++C  L E +VRRVWE + +VC TACA N RSE FP+ WLFH+RWAK+KKD AG +GP+GRR+VFETVGGRTTAIVPSVQR++ G  ++K  GE  E+   VG+G R Q            KK I         E  E+E G      K   P      A K  K  K +  + P+  K    T +RS+
Sbjct:    1 MPELPEVAALASAIKKEVIGRRLVHVLTKEQGGGPRHGLYDDLVFGKADEQEVHRSMEGRVLTAVGRRGKHLWMELC--DSFPSCSQ----GRNHRGSAIPSKASKTM------DDDTRFVLFHMGMTGSLVFQHVAIPQYRSFALDVTEGWPPKHCKAEFVFEESPKEGDRNNELRLAFCDQRRWGRIQILPAGVVDPRTESPLKELAPDAWMERPDLAVFAERLKGTDIPVKAALLDQHRIVCGVGNWVADEVLYQAGADPAKKCSVLKEEEVRRVWEMLAHVCGTACAVNGRSEAFPSDWLFHFRWAKSKKDKAGVRGPDGRRVVFETVGGRTTAIVPSVQRIKGGRIKDKVEGEVVEEQEKVGKGSRAQS------GSTRAKKVIKIEGENNDTETSEKERG------KRTKPINYGAAARKETKTRKKIPGSSPSGAKVRQGTKQRSA 429
The following BLAST results are available for this feature:
BLAST of NO03G05500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30020.14.900e-12755.41formamidopyrimidine-dna glycosylase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05500NO03G05500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05500.1NO03G05500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05500.1.cds1NO03G05500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05500.1 ID=NO03G05500.1|Name=NO03G05500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
ATGCCGGAGCTCCCCGAAGTTGCTGCCCTGGTCGCTGCCCTCGAAAATGA
AGCCAAAAGTAAGCGGTTGCTTCGAGTGTTGACCAAGGAAGCGGGCGGGG
GACCCCGGGATGGTTTGTACGACGACTTGGTGTTCAGTGGCACCGAGGAG
CAGGAAATGCACCGCGTGCTGGAAGGACGTGCCTTGACAGGCGTGGGTCG
GAAGGGGAAGCATCTGTGGATGGAGCTATCCTTGCTTCCCTCCCCCCCTT
CAACCTCCGCTGCATTCGGTGTTGGGAATGGGAGAAGAGGAGGAGATGAA
GGCGCCCGCAACACTTCTACCCTAACAACCTCTTCTGCTCCTCAAGAAGA
CAAGCGCTTCGTCCTCTTCCACATGGGAATGACAGGCTCCCTCCTATTCC
AGCACGTGGCCATCCCACAATACAGATCATTTTCCCTCGACGTCTCGAAA
GGCTGGCCACCCAAGTTCTGCAAGGCCCAATTTATCTTCGGTAATTGTGA
GGAAGGGAAGGATGACGAGGCAATTCAACTAGCGTTTTGCGACCAACGAC
GGTGGGGCCGCGTACAGCTTCTACCAGCTGGAGTGAAGGACCCTCGGATG
GAGGCCCCGCTCAAAGAATTAGCGCCGGATGCCTGGAAGGAACGACCTTC
ATTGCAAGTGTTCAGGGATAAGTTAAAAGAGACCGACATTGCCATTAAGG
CGGCCTTATTGGATCAGGGGAGGGTTTTGTCGGGATTGGGCAATTGGGTG
TGCGATGAGGTGCTGTTCCAGGCCAAGGTGGACCCGGCGCGAAGGTGCAA
GGCGCTGACGGAGGGGGACGTGAGGAGGGTGTGGGAGTCGGTGGACTACG
TGTGTGCGACGGCGTGTGCGGCTAATGCGCGGAGCGAAGGATTTCCTACT
GGTTGGTTATTCCATTATCGGTGGGCCAAGACCAAGAAGGACATGGCGGG
AGCTAAGGGTCCGGAGGGGAGAAGAATGGTGTTTGAGACAGTTGGAGGGA
GGACAACGGCGATTGTGCCTTCGGTGCAGCGGGTGAGAAGGGGGGGGGAT
GAGGAGAAGGAGATGGGAGAGCCAGGAGAGGATGGGGCTGGGGTAGGTAG
AGGAAAAAGAAAACAAAAGGAGGAGGAAGATGAATTTGAACAGATCATGA
CGAAGAAGAAGATAAGCAAGGGAAAGAGGTGTGTGAAGGAAGAGGTGATG
GAAGAGGAGGTTGGTATTGGGCGAGGAGACGAGAAGGCAGAATCGCCCTC
GATCATATCCGAACGGGCCATCAAGGTGATTAAGATGGAGAAAGATGTGA
AAATGAATATACCAGCATCCGAAAAGACGACGACACCACGACGCAGCAGT
CCACGTGTGAAGGCGGGCGAAGTCAAGACGAAAGGAAAGAGAGCAAAAAA
ATGA
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protein sequence of NO03G05500.1

>NO03G05500.1-protein ID=NO03G05500.1-protein|Name=NO03G05500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MPELPEVAALVAALENEAKSKRLLRVLTKEAGGGPRDGLYDDLVFSGTEE
QEMHRVLEGRALTGVGRKGKHLWMELSLLPSPPSTSAAFGVGNGRRGGDE
GARNTSTLTTSSAPQEDKRFVLFHMGMTGSLLFQHVAIPQYRSFSLDVSK
GWPPKFCKAQFIFGNCEEGKDDEAIQLAFCDQRRWGRVQLLPAGVKDPRM
EAPLKELAPDAWKERPSLQVFRDKLKETDIAIKAALLDQGRVLSGLGNWV
CDEVLFQAKVDPARRCKALTEGDVRRVWESVDYVCATACAANARSEGFPT
GWLFHYRWAKTKKDMAGAKGPEGRRMVFETVGGRTTAIVPSVQRVRRGGD
EEKEMGEPGEDGAGVGRGKRKQKEEEDEFEQIMTKKKISKGKRCVKEEVM
EEEVGIGRGDEKAESPSIISERAIKVIKMEKDVKMNIPASEKTTTPRRSS
PRVKAGEVKTKGKRAKK*
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mRNA from alignment at chr3:1579381..1580784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05500.1 ID=NO03G05500.1|Name=NO03G05500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at chr3:1579381..1580784- (Nannochloropsis oceanica)
ATGCCGGAGCTCCCCGAAGTTGCTGCCCTGGTCGCTGCCCTCGAAAATGA
AGCCAAAAGTAAGCGGTTGCTTCGAGTGTTGACCAAGGAAGCGGGCGGGG
GACCCCGGGATGGTTTGTACGACGACTTGGTGTTCAGTGGCACCGAGGAG
CAGGAAATGCACCGCGTGCTGGAAGGACGTGCCTTGACAGGCGTGGGTCG
GAAGGGGAAGCATCTGTGGATGGAGCTATCCTTGCTTCCCTCCCCCCCTT
CAACCTCCGCTGCATTCGGTGTTGGGAATGGGAGAAGAGGAGGAGATGAA
GGCGCCCGCAACACTTCTACCCTAACAACCTCTTCTGCTCCTCAAGAAGA
CAAGCGCTTCGTCCTCTTCCACATGGGAATGACAGGCTCCCTCCTATTCC
AGCACGTGGCCATCCCACAATACAGATCATTTTCCCTCGACGTCTCGAAA
GGCTGGCCACCCAAGTTCTGCAAGGCCCAATTTATCTTCGGTAATTGTGA
GGAAGGGAAGGATGACGAGGCAATTCAACTAGCGTTTTGCGACCAACGAC
GGTGGGGCCGCGTACAGCTTCTACCAGCTGGAGTGAAGGACCCTCGGATG
GAGGCCCCGCTCAAAGAATTAGCGCCGGATGCCTGGAAGGAACGACCTTC
ATTGCAAGTGTTCAGGGATAAGTTAAAAGAGACCGACATTGCCATTAAGG
CGGCCTTATTGGATCAGGGGAGGGTTTTGTCGGGATTGGGCAATTGGGTG
TGCGATGAGGTGCTGTTCCAGGCCAAGGTGGACCCGGCGCGAAGGTGCAA
GGCGCTGACGGAGGGGGACGTGAGGAGGGTGTGGGAGTCGGTGGACTACG
TGTGTGCGACGGCGTGTGCGGCTAATGCGCGGAGCGAAGGATTTCCTACT
GGTTGGTTATTCCATTATCGGTGGGCCAAGACCAAGAAGGACATGGCGGG
AGCTAAGGGTCCGGAGGGGAGAAGAATGGTGTTTGAGACAGTTGGAGGGA
GGACAACGGCGATTGTGCCTTCGGTGCAGCGGGTGAGAAGGGGGGGGGAT
GAGGAGAAGGAGATGGGAGAGCCAGGAGAGGATGGGGCTGGGGTAGGTAG
AGGAAAAAGAAAACAAAAGGAGGAGGAAGATGAATTTGAACAGATCATGA
CGAAGAAGAAGATAAGCAAGGGAAAGAGGTGTGTGAAGGAAGAGGTGATG
GAAGAGGAGGTTGGTATTGGGCGAGGAGACGAGAAGGCAGAATCGCCCTC
GATCATATCCGAACGGGCCATCAAGGTGATTAAGATGGAGAAAGATGTGA
AAATGAATATACCAGCATCCGAAAAGACGACGACACCACGACGCAGCAGT
CCACGTGTGAAGGCGGGCGAAGTCAAGACGAAAGGAAAGAGAGCAAAAAA
ATGA
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Coding sequence (CDS) from alignment at chr3:1579381..1580784-

>NO03G05500.1 ID=NO03G05500.1|Name=NO03G05500.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr3:1579381..1580784- (Nannochloropsis oceanica)
ATGCCGGAGCTCCCCGAAGTTGCTGCCCTGGTCGCTGCCCTCGAAAATGA
AGCCAAAAGTAAGCGGTTGCTTCGAGTGTTGACCAAGGAAGCGGGCGGGG
GACCCCGGGATGGTTTGTACGACGACTTGGTGTTCAGTGGCACCGAGGAG
CAGGAAATGCACCGCGTGCTGGAAGGACGTGCCTTGACAGGCGTGGGTCG
GAAGGGGAAGCATCTGTGGATGGAGCTATCCTTGCTTCCCTCCCCCCCTT
CAACCTCCGCTGCATTCGGTGTTGGGAATGGGAGAAGAGGAGGAGATGAA
GGCGCCCGCAACACTTCTACCCTAACAACCTCTTCTGCTCCTCAAGAAGA
CAAGCGCTTCGTCCTCTTCCACATGGGAATGACAGGCTCCCTCCTATTCC
AGCACGTGGCCATCCCACAATACAGATCATTTTCCCTCGACGTCTCGAAA
GGCTGGCCACCCAAGTTCTGCAAGGCCCAATTTATCTTCGGTAATTGTGA
GGAAGGGAAGGATGACGAGGCAATTCAACTAGCGTTTTGCGACCAACGAC
GGTGGGGCCGCGTACAGCTTCTACCAGCTGGAGTGAAGGACCCTCGGATG
GAGGCCCCGCTCAAAGAATTAGCGCCGGATGCCTGGAAGGAACGACCTTC
ATTGCAAGTGTTCAGGGATAAGTTAAAAGAGACCGACATTGCCATTAAGG
CGGCCTTATTGGATCAGGGGAGGGTTTTGTCGGGATTGGGCAATTGGGTG
TGCGATGAGGTGCTGTTCCAGGCCAAGGTGGACCCGGCGCGAAGGTGCAA
GGCGCTGACGGAGGGGGACGTGAGGAGGGTGTGGGAGTCGGTGGACTACG
TGTGTGCGACGGCGTGTGCGGCTAATGCGCGGAGCGAAGGATTTCCTACT
GGTTGGTTATTCCATTATCGGTGGGCCAAGACCAAGAAGGACATGGCGGG
AGCTAAGGGTCCGGAGGGGAGAAGAATGGTGTTTGAGACAGTTGGAGGGA
GGACAACGGCGATTGTGCCTTCGGTGCAGCGGGTGAGAAGGGGGGGGGAT
GAGGAGAAGGAGATGGGAGAGCCAGGAGAGGATGGGGCTGGGGTAGGTAG
AGGAAAAAGAAAACAAAAGGAGGAGGAAGATGAATTTGAACAGATCATGA
CGAAGAAGAAGATAAGCAAGGGAAAGAGGTGTGTGAAGGAAGAGGTGATG
GAAGAGGAGGTTGGTATTGGGCGAGGAGACGAGAAGGCAGAATCGCCCTC
GATCATATCCGAACGGGCCATCAAGGTGATTAAGATGGAGAAAGATGTGA
AAATGAATATACCAGCATCCGAAAAGACGACGACACCACGACGCAGCAGT
CCACGTGTGAAGGCGGGCGAAGTCAAGACGAAAGGAAAGAGAGCAAAAAA
ATGA
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Synonyms
Publications