NO03G05480.1, NO03G05480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05480.1
Unique NameNO03G05480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2517
Alignment locationchr3:1572032..1574960 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1572032..1574960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G05480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05480NO03G05480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05480.1NO03G05480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05480.1.cds1NO03G05480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05480.1 ID=NO03G05480.1|Name=NO03G05480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2517bp
AGGTTCGCTGGGCGACTACTGGATAGAGCACCACCATCGTGGAGCGCCGT
GAACCGGTGCTGTGCCATGGCGGCTCACTTTCACGCCAGGCTCCCGAGCG
GTGCTTCCACGCTGGGAGGGGCGCTCTACATGGCGGCAACGGCGATGGAG
TCGATCAGTGGCGAAGTCCATGCTTGTTCAGACTTGAAGCGGTACGTGGG
AGTCACCAAGCGATTGCGGAATCGGAGCGCTTGCGCTGTGTGCTCCCAAG
CCAAGGTAAAAGAAGTTAGAGGGGAGAAGGTTTCACAACGTTCACGACGA
GAGGGCGGGTGGATGAAAGGGTCTTTTATTAGTTGCGCGGGACAAGGCTT
GTGTCTTTTTCACTTTCTTTCTCACGCACCACCTGACATGCCTACACCCA
TGTATGCGCTGTCGATTGCTCTCACTTATCCATCCTTGTCCATTACCACC
GTACTCATTTTTTCAAATCAATAGGTGCGCTGCGATGGGAATATCCCCTG
TTCCCGCTGCCTTCGCCTGTCCCACCCTTGTCGCCCTCAAAGTCCACTAA
TCCAAGCCGAGCCCACCACCACATTGCTCGACATCGCCTTCCAGCAGGTG
CAGTCTCAAGAGATCGGTGAATCGTACATGGACGTGTTCAGAAGAGTCAG
CCGGGACTTTCTGCTCGACCGAGAAAGTGTCTACGCCGTGCTTCGAACCT
GGATGAGACTGTCCGAATTGGCGGGCAGAGATGTCAGTTGGACGGTAGGC
GATTCAATCCTCAAGACCCTTCGGTCCACGGGGATGAATGGGGGAAGGGG
GCGAGGAGAGGAGCTGGTGTGTCAGCAGTGGAAGGGGGGGAGGGCGCGCG
CGGACGCAGTGCAGGCAAGGTCGAGGGAGGCGAGTGAATTTCTGAAGCGT
AGTGAGAGTTTTCGATATGAGGATGACAGCATCTCGCCCATGTGCATGTT
TATATATACCTCCCTCCCTCCCTGTGGGTCCAGCGGCAATAAGGGGGCAC
CATCAGCTGCACCCATGTCCGAGGACGACGAGCTGTTCATGGTCACTGCC
TGCAACGACTCCTTTTACAAGGCCTTTACCACGATGCGCACTACGGCAGG
AGGGAGGGAGGGCGGGCTGTCGCCCACCATGTTCGACGAGGCCGATGTGC
TTGAGTACAAGACAAGCTTTTTTTTCCTCCTGGCGTCGCTAGTGCGACAG
GTAGACCGAGCGATCTTCTTACAGTTGCTGCTGGAGGGGCTCCACATACT
CTCGATCCATAAACGAGTCGAATTTGTCAAGATGTACAACGCGGAGGGCC
TCGTCCACACGTACATCGTCAGTAGCAAGAAAGTTTGGTTGAGGGAGGGA
GGGAGGGAGGGGGCGATGGGGGGGTTATATGCGCATGTGTTAAAACTCGA
AGTGGCGCCTATCAGTAAGCATTTGAGAAAGAATGCAGGGCGAAAGGCGT
TGCTGGGGGAGAGGGGTATCAAAAGGAGTCGAATTGCAGAGGGGCGAGCA
GAAGCGGACGAGATGGACAAGGACGGTGGAGGAGAGATGACAGAAGAAGC
AGGATCTTTACGTTCTCCATCTGCGGCGGGCTCTATGTTTCTAAAACAGT
CTATAGTGCCCTTGCAGATCTTGCGAGCCGGACAGATGGCAGAAACTCGG
GCGATAGGCGACCACAAGATCGGTATGGGGGGCGGGGGGGAAGAATGGAG
AGGAGAGAGCAAGTGCACAAGTGATTGCAACGAGAAGGTATCCACTTTTG
GGATGCACGGGATGAGTCTCATGTCATTACCTTTGCCGGCGCTGCAACGT
AAACATTTTGACGAAATTGTTGCGTACATGCAGCGGGGGGGGGGCAACAT
GTTTGCCATTCCCGACCGCTCCGTGTGGTTTAATGAAGGAGGGGGCGGTG
TGCCTGAGCACTTGCACCTGCATCAACGGCTGCTGCGGAGGGGCAAGAAC
AGGATGCAAGTGTCTTTAGCTGCTTACAGGGGAATGAAAAGCCGCCAGGG
TTTCTGGAAGGTACCGTCGAATGCGGAGGGAAAGGACGAGTCAAATGAGC
AGGAATGGCGACAGATCGAGAAAGGGCAGGTGGGCCAAGACCACCACCAC
CACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTACAGCA
CAAGTATGGACAGCAACAGCAAGTGAAGAGACACAGGCATAACCAGCTGT
GGCAGCAGCAACTGCAGCAACACCAGCAGCCTGCTTCGATACCCTCCGCG
CGTATACCTGCTGTGGTGGGACCACTGGGGTCGTGTTCCCCTTTGTCTCC
GCTTTCTGTCCCCTCCTCCTTTTCCGTCCATGAGTCTACGCCGCCTATTT
CTTATTCTATCTCTTCCCGCTGTCCTTCCCCCTCGTCATGCAACTTCCAT
GTCTCCTGCCTCTTGTCCTCGCGCCGCTCTTCCCCCTACTCCTCCTGCTC
GCCTGTCTGCGGTGCTTGTGGCCACAATTTCCCTGCCAACAACAATGACA
GCTCTTGGGCTGTCTAA
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protein sequence of NO03G05480.1

>NO03G05480.1-protein ID=NO03G05480.1-protein|Name=NO03G05480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MDVFRRVSRDFLLDRESVYAVLRTWMRLSELAGRDVSWTVGDSILKTLRS
TGMNGGRGRGEELVCQQWKGGRARADAVQARSREASEFLKRSESFRYEDD
SISPMCMFIYTSLPPCGSSGNKGAPSAAPMSEDDELFMVTACNDSFYKAF
TTMRTTAGGREGGLSPTMFDEADVLEYKTSFFFLLASLVRQVDRAIFLQL
LLEGLHILSIHKRVEFVKMYNAEGLVHTYIVSSKKVWLREGGREGAMGGL
YAHVLKLEVAPISKHLRKNAGRKALLGERGIKRSRIAEGRAEADEMDKDG
GGEMTEEAGSLRSPSAAGSMFLKQSIVPLQILRAGQMAETRAIGDHKIGM
GGGGEEWRGESKCTSDCNEKVSTFGMHGMSLMSLPLPALQRKHFDEIVAY
MQRGGGNMFAIPDRSVWFNEGGGGVPEHLHLHQRLLRRGKNRMQVSLAAY
RGMKSRQGFWKVPSNAEGKDESNEQEWRQIEKGQVGQDHHHHHHQQQQQQ
QQQQQLQHKYGQQQQVKRHRHNQLWQQQLQQHQQPASIPSARIPAVVGPL
GSCSPLSPLSVPSSFSVHESTPPISYSISSRCPSPSSCNFHVSCLLSSRR
SSPYSSCSPVCGACGHNFPANNNDSSWAV*
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mRNA from alignment at chr3:1572032..1574960+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05480.1 ID=NO03G05480.1|Name=NO03G05480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2929bp|location=Sequence derived from alignment at chr3:1572032..1574960+ (Nannochloropsis oceanica)
AGGTTCGCTGGGCGACTACTGGATAGAGCACCACCATCGTGGAGCGCCGT GAACCGGTGCTGTGCCATGGCGGCTCACTTTCACGCCAGGCTCCCGAGCG GTGCTTCCACGCTGGGAGGGGCGCTCTACATGGCGGCAACGGCGATGGAG TCGATCAGTGGCGAAGTCCATGCTTGTTCAGACTTGAAGCGGTACGTGGG AGTCACCAAGCGATTGCGGAATCGGAGCGCTTGCGCTGTGTGCTCCCAAG CCAAGGTAAAAGAAGTTAGAGGGGAGAAGGTTTCACAACGTTCACGACGA GAGGGCGGGTGGATGAAAGGGTCTTTTATTAGTTGCGCGGGACAAGGCTT GTGTCTTTTTCACTTTCTTTCTCACGCACCACCTGACATGCCTACACCCA TGTATGCGCTGTCGATTGCTCTCACTTATCCATCCTTGTCCATTACCACC GTACTCATTTTTTCAAATCAATAGGTGCGCTGCGATGGGAATATCCCCTG TTCCCGCTGCCTTCGCCTGTCCCACCCTTGTCGCCCTCAAAGTCCACTAA TCCAAGCCGAGCCCACCACCACATTGCTCGACATCGCCTTCCAGCAGGTG CAGTCTCAAGAGGTAAGCTATCAACATGATAGAGTCATTCATTTTGGCAG AACAGATCAGTCATGCTGAAGCGCTCTTTCCTCGCACGGCTGCAGTGAGT GACTTCTTATTCTTTTTCTTTTTCTCATTCTTATTCTAACTCACTCTTAT TCTTATCCTTATCCTTGATCTTTTTCATGGCATGTTTAAGGCCAACAATC CCTTCCTCCCTCCCTCCTTCCTTCCCTCCATCCCTTCCGCATACTTTCCG CAGCCTTGCTAAATCCCCCCCTGCTCGCTTTCCCTTCCTCTTCCTTTTTT CCCATCCCCTCTCCACAAGCGCGTACCAACAACTCAGAGCCTGAATGTGT ACCCCTTAATCACAGTCTCAAGCTTCAACCTGACCCTCTTCTGTCCCCCC ATTAATCCATCTCTCCCTCCCTAGATCGGTGAATCGTACATGGACGTGTT CAGAAGAGTCAGCCGGGACTTTCTGCTCGACCGAGAAAGTGTCTACGCCG TGCTTCGAACCTGGATGAGACTGTCCGAATTGGCGGGCAGAGATGTCAGT TGGACGGTAGGCGATTCAATCCTCAAGACCCTTCGGTCCACGGGGATGAA TGGGGGAAGGGGGCGAGGAGAGGAGCTGGTGTGTCAGCAGTGGAAGGGGG GGAGGGCGCGCGCGGACGCAGTGCAGGCAAGGTCGAGGGAGGCGAGTGAA TTTCTGAAGCGTAGTGAGAGTTTTCGATATGAGGATGACAGCATCTCGCC CATGTGCATGTTTATATATACCTCCCTCCCTCCCTGTGGGTCCAGCGGCA ATAAGGGGGCACCATCAGCTGCACCCATGTCCGAGGACGACGAGCTGTTC ATGGTCACTGCCTGCAACGACTCCTTTTACAAGGCCTTTACCACGATGCG CACTACGGCAGGAGGGAGGGAGGGCGGGCTGTCGCCCACCATGTTCGACG AGGCCGATGTGCTTGAGTACAAGACAAGCTTTTTTTTCCTCCTGGCGTCG CTAGTGCGACAGGTAGACCGAGCGATCTTCTTACAGTTGCTGCTGGAGGG GCTCCACATACTCTCGATCCATAAACGAGTCGAATTTGTCAAGATGTACA ACGCGGAGGGCCTCGTCCACACGTACATCGTCAGTAGCAAGAAAGTTTGG TTGAGGGAGGGAGGGAGGGAGGGGGCGATGGGGGGGTTATATGCGCATGT GTTAAAACTCGAAGTGGCGCCTATCAGTAAGCATTTGAGAAAGAATGCAG GGCGAAAGGCGTTGCTGGGGGAGAGGGGTATCAAAAGGAGTCGAATTGCA GAGGGGCGAGCAGAAGCGGACGAGATGGACAAGGACGGTGGAGGAGAGAT GACAGAAGAAGCAGGATCTTTACGTTCTCCATCTGCGGCGGGCTCTATGT TTCTAAAACAGTCTATAGTGCCCTTGCAGATCTTGCGAGCCGGACAGATG GCAGAAACTCGGGCGATAGGCGACCACAAGATCGGTATGGGGGGCGGGGG GGAAGAATGGAGAGGAGAGAGCAAGTGCACAAGTGATTGCAACGAGAAGG TATCCACTTTTGGGATGCACGGGATGAGTCTCATGTCATTACCTTTGCCG GCGCTGCAACGTAAACATTTTGACGAAATTGTTGCGTACATGCAGCGGGG GGGGGGCAACATGTTTGCCATTCCCGACCGCTCCGTGTGGTTTAATGAAG GAGGGGGCGGTGTGCCTGAGCACTTGCACCTGCATCAACGGCTGCTGCGG AGGGGCAAGAACAGGATGCAAGTGTCTTTAGCTGCTTACAGGGGAATGAA AAGCCGCCAGGGTTTCTGGAAGGTACCGTCGAATGCGGAGGGAAAGGACG AGTCAAATGAGCAGGAATGGCGACAGATCGAGAAAGGGCAGGTGGGCCAA GACCACCACCACCACCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAACTACAGCACAAGTATGGACAGCAACAGCAAGTGAAGAGACACAGGC ATAACCAGCTGTGGCAGCAGCAACTGCAGCAACACCAGCAGCCTGCTTCG ATACCCTCCGCGCGTATACCTGCTGTGGTGGGACCACTGGGGTCGTGTTC CCCTTTGTCTCCGCTTTCTGTCCCCTCCTCCTTTTCCGTCCATGAGTCTA CGCCGCCTATTTCTTATTCTATCTCTTCCCGCTGTCCTTCCCCCTCGTCA TGCAACTTCCATGTCTCCTGCCTCTTGTCCTCGCGCCGCTCTTCCCCCTA CTCCTCCTGCTCGCCTGTCTGCGGTGCTTGTGGCCACAATTTCCCTGCCA ACAACAATGACAGCTCTTGGGCTGTCTAA
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Coding sequence (CDS) from alignment at chr3:1572032..1574960+

>NO03G05480.1 ID=NO03G05480.1|Name=NO03G05480.1|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at chr3:1572032..1574960+ (Nannochloropsis oceanica)
ATGGACGTGTTCAGAAGAGTCAGCCGGGACTTTCTGCTCGACCGAGAAAG
TGTCTACGCCGTGCTTCGAACCTGGATGAGACTGTCCGAATTGGCGGGCA
GAGATGTCAGTTGGACGGTAGGCGATTCAATCCTCAAGACCCTTCGGTCC
ACGGGGATGAATGGGGGAAGGGGGCGAGGAGAGGAGCTGGTGTGTCAGCA
GTGGAAGGGGGGGAGGGCGCGCGCGGACGCAGTGCAGGCAAGGTCGAGGG
AGGCGAGTGAATTTCTGAAGCGTAGTGAGAGTTTTCGATATGAGGATGAC
AGCATCTCGCCCATGTGCATGTTTATATATACCTCCCTCCCTCCCTGTGG
GTCCAGCGGCAATAAGGGGGCACCATCAGCTGCACCCATGTCCGAGGACG
ACGAGCTGTTCATGGTCACTGCCTGCAACGACTCCTTTTACAAGGCCTTT
ACCACGATGCGCACTACGGCAGGAGGGAGGGAGGGCGGGCTGTCGCCCAC
CATGTTCGACGAGGCCGATGTGCTTGAGTACAAGACAAGCTTTTTTTTCC
TCCTGGCGTCGCTAGTGCGACAGGTAGACCGAGCGATCTTCTTACAGTTG
CTGCTGGAGGGGCTCCACATACTCTCGATCCATAAACGAGTCGAATTTGT
CAAGATGTACAACGCGGAGGGCCTCGTCCACACGTACATCGTCAGTAGCA
AGAAAGTTTGGTTGAGGGAGGGAGGGAGGGAGGGGGCGATGGGGGGGTTA
TATGCGCATGTGTTAAAACTCGAAGTGGCGCCTATCAGTAAGCATTTGAG
AAAGAATGCAGGGCGAAAGGCGTTGCTGGGGGAGAGGGGTATCAAAAGGA
GTCGAATTGCAGAGGGGCGAGCAGAAGCGGACGAGATGGACAAGGACGGT
GGAGGAGAGATGACAGAAGAAGCAGGATCTTTACGTTCTCCATCTGCGGC
GGGCTCTATGTTTCTAAAACAGTCTATAGTGCCCTTGCAGATCTTGCGAG
CCGGACAGATGGCAGAAACTCGGGCGATAGGCGACCACAAGATCGGTATG
GGGGGCGGGGGGGAAGAATGGAGAGGAGAGAGCAAGTGCACAAGTGATTG
CAACGAGAAGGTATCCACTTTTGGGATGCACGGGATGAGTCTCATGTCAT
TACCTTTGCCGGCGCTGCAACGTAAACATTTTGACGAAATTGTTGCGTAC
ATGCAGCGGGGGGGGGGCAACATGTTTGCCATTCCCGACCGCTCCGTGTG
GTTTAATGAAGGAGGGGGCGGTGTGCCTGAGCACTTGCACCTGCATCAAC
GGCTGCTGCGGAGGGGCAAGAACAGGATGCAAGTGTCTTTAGCTGCTTAC
AGGGGAATGAAAAGCCGCCAGGGTTTCTGGAAGGTACCGTCGAATGCGGA
GGGAAAGGACGAGTCAAATGAGCAGGAATGGCGACAGATCGAGAAAGGGC
AGGTGGGCCAAGACCACCACCACCACCACCACCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACTACAGCACAAGTATGGACAGCAACAGCAAGTGAA
GAGACACAGGCATAACCAGCTGTGGCAGCAGCAACTGCAGCAACACCAGC
AGCCTGCTTCGATACCCTCCGCGCGTATACCTGCTGTGGTGGGACCACTG
GGGTCGTGTTCCCCTTTGTCTCCGCTTTCTGTCCCCTCCTCCTTTTCCGT
CCATGAGTCTACGCCGCCTATTTCTTATTCTATCTCTTCCCGCTGTCCTT
CCCCCTCGTCATGCAACTTCCATGTCTCCTGCCTCTTGTCCTCGCGCCGC
TCTTCCCCCTACTCCTCCTGCTCGCCTGTCTGCGGTGCTTGTGGCCACAA
TTTCCCTGCCAACAACAATGACAGCTCTTGGGCTGTCTAA
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Synonyms
Publications