|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1566972..1569496 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05470.1 vs.
Match: EWM30016.1 (hemk methyltransferase family member 1 [Nannochloropsis gaditana]) HSP 1 Score: 421.8 bits (1083), Expect = 3.100e-114 Identity = 231/374 (61.76%), Postives = 273/374 (72.99%), Query Frame = 0
Query: 128 SSSSPYPSPSTIPSTLAWASSLLLSHQVPDAELSAEYLLIHTLQLPATTPRAALFEY---GRKKKGEEMEIPEATLAAYHSLLLRRGQRREPVQYLVGSWDFHRVHLLVLPPILIPRPETEELVEWVLEEEKREGGRERGREGG-GRPLRFLDIGCGTGAIGLALLNAFREEAPARALSCVALDPHPTAGYLARENGARLNFPPHVYEVVAGAIGEEEEE--EEEEREGGLISRLLAAATGGGEGGREGEGGREGGREGGRFDFLVANPPYIPEEDMDGLQPEVKAWEDRGALAGGDKDGTRIIRAILNEAPRLLK----RMEGGRVWMEVDASHPALFAAEEEEKMKRNVKGGMRLIEWRRDLSGRPRFCCWA 492
SS P TI ++LAWA+S LL H VPDA LSAEYLL+H L P +TPR L E G ++KGE + +P T AA+ SLL R G +REPVQYLVG WDFHR+HL + PP+LIPRPETEELVEWVLEEE RE G E G GG P+RFLD+GCG+GAIGLALL A+R+ P+R ++CVALDPHP A LA+ N ARL FPP Y+VV GA+GE++ E EE E+EGG+++ LL A GG G EG E R +FDF+VANPPYIP+ DM LQPEVK WED GALAGG DGTRIIRAIL APRLL+ M+ +VWMEVDASHP LFA EEEEK +R V G +RL+EWR+DLSG+PRFCCWA
Sbjct: 80 SSIFATPFSGTIAASLAWATSFLLDHNVPDAALSAEYLLLHALHYPPSTPRRVLHERVSEGSEEKGENV-VPPDTRAAFQSLLYRHGIKREPVQYLVGGWDFHRIHLALAPPVLIPRPETEELVEWVLEEEGREEGEEGGGGGGPNLPIRFLDVGCGSGAIGLALLWAYRDAWPSRDVTCVALDPHPAAVALAKANAARLGFPPSAYQVVQGALGEDKGEGGEEGEKEGGVVASLLGA---GGLKGGSIEGEWETKRR-KKFDFIVANPPYIPDADMGRLQPEVKDWEDPGALAGGGDDGTRIIRAILRAAPRLLEPNRIGMKKAKVWMEVDASHPLLFAKEEEEKERRKVGGELRLMEWRKDLSGKPRFCCWA 448
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05470.1 ID=NO03G05470.1|Name=NO03G05470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp ATGACAACCAACTCTGCTGCGATTGATACATCGATCTCTATCCACGGCCT CTGGCCAGGACAAGACGCGACACGGTACTGGTTGATCGACCAGGCGGAGG GAATACGGCGGGTGAGAGGCGATGTTACCCCCCCCCTACGCGCGCGAGGT GGACCACGACTTAGTCCGGGCCTGGCACTCTTTTCCCTTGTCCTGGGCGT GGCCAAGGCGTTCCGCTTAACCACCACCAGCACGTTTCGCCTCCCTCTCT ACCTCCCCACCTCCTTACACTCCTCCCACCATCGCCGCCTGCCCTCCAGT CGCCATTCTTTGTCCTCGTCTTCTCCACCTCCGCTCCTCCTCTGCCGTTG CGCAGGCACCTCCTCTTCCTCCCCCTCCCCGTCCTCCTCAAGCCCCTACC CTTCCCCCTCGACCATCCCCTCCACGCTGGCATGGGCCTCGTCCCTCCTC CTCTCTCACCAGGTGCCAGACGCCGAGCTCTCGGCGGAGTACCTGTTAAT CCACACACTACAGCTCCCAGCCACCACCCCTCGCGCCGCCCTCTTTGAGT ACGGGAGGAAAAAAAAGGGGGAGGAAATGGAGATTCCGGAAGCCACCCTC GCTGCCTATCACTCCCTGCTCCTCCGCCGAGGGCAACGCCGGGAGCCAGT GCAATATCTCGTCGGCAGCTGGGACTTTCACCGTGTGCATCTTCTCGTTC TCCCCCCCATCCTCATCCCTCGCCCTGAGACGGAAGAGCTCGTGGAGTGG GTGTTGGAGGAGGAGAAGAGGGAGGGAGGGAGGGAGAGGGGGAGGGAGGG AGGGGGGCGCCCACTGAGGTTTCTGGATATCGGGTGTGGAACGGGGGCGA TTGGCTTGGCCTTGTTGAATGCCTTTCGGGAGGAGGCACCGGCAAGAGCG CTTTCATGCGTCGCGCTTGACCCTCATCCAACGGCCGGGTATCTTGCCAG AGAAAATGGGGCCCGACTTAACTTCCCTCCTCATGTATATGAAGTGGTGG CAGGCGCGATTGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGGA GGGTTGATATCTCGCCTTCTGGCTGCAGCCACTGGTGGAGGAGAAGGAGG AAGAGAAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTAGGTTTG ATTTTTTAGTGGCCAACCCGCCGTACATTCCGGAGGAAGACATGGATGGC TTACAGCCCGAAGTCAAGGCCTGGGAAGACCGTGGGGCGTTGGCAGGTGG GGACAAGGACGGGACCCGCATCATTCGCGCAATCCTAAACGAAGCCCCAC GACTATTGAAAAGAATGGAGGGAGGGAGGGTGTGGATGGAGGTAGATGCG AGTCATCCGGCTTTGTTTGCGGCGGAAGAGGAGGAGAAAATGAAGAGGAA TGTGAAAGGAGGGATGCGATTGATCGAATGGCGTAGGGACCTTTCGGGGA GACCCCGTTTTTGCTGTTGGGCATGGAAGGGGGAGGAGGAAGGAGAAGGA GAAGGGGAGGGAGAAGGAGGGGCGAAGAGGAACTGAATATAGACTACAAT TAGATGCAACAACATTTTAAGAAGTCCTTGCGAAAA back to topprotein sequence of NO03G05470.1 >NO03G05470.1-protein ID=NO03G05470.1-protein|Name=NO03G05470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp MTTNSAAIDTSISIHGLWPGQDATRYWLIDQAEGIRRVRGDVTPPLRARG GPRLSPGLALFSLVLGVAKAFRLTTTSTFRLPLYLPTSLHSSHHRRLPSS RHSLSSSSPPPLLLCRCAGTSSSSPSPSSSSPYPSPSTIPSTLAWASSLL LSHQVPDAELSAEYLLIHTLQLPATTPRAALFEYGRKKKGEEMEIPEATL AAYHSLLLRRGQRREPVQYLVGSWDFHRVHLLVLPPILIPRPETEELVEW VLEEEKREGGRERGREGGGRPLRFLDIGCGTGAIGLALLNAFREEAPARA LSCVALDPHPTAGYLARENGARLNFPPHVYEVVAGAIGEEEEEEEEEREG GLISRLLAAATGGGEGGREGEGGREGGREGGRFDFLVANPPYIPEEDMDG LQPEVKAWEDRGALAGGDKDGTRIIRAILNEAPRLLKRMEGGRVWMEVDA SHPALFAAEEEEKMKRNVKGGMRLIEWRRDLSGRPRFCCWAWKGEEEGEG EGEGEGGAKRN* back to topmRNA from alignment at chr3:1566972..1569496- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05470.1 ID=NO03G05470.1|Name=NO03G05470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2525bp|location=Sequence derived from alignment at chr3:1566972..1569496- (Nannochloropsis oceanica) ATGGTAAGATGAACCCAAGTCCACTCGCACACACCAAAAACAGCCGGCAG
TCTGCCAAGGAGCCGACCTACTCCAAGTCCGGCTCCGACTCAACACCACT
TCTCTCAGAAGCTATGCCTACCTAATGTGTTTTCGTCTATTTCTTCGCCC
TACGCCACCACCACCATCACCATCAGACAACCAACTCTGCTGCGATTGAT
ACATCGATCTCTATCCACGGCCTCTGGCCAGGACAAGACGCGACACGGTA
CTGGTTGATCGACCAGGCGGAGGGAATACGGCGGGTGAGAGGCGATGTTA
CCCCCCCCCTACGCGCGCGAGGTGGACCACGACTTAGTCCGGGCCTGGCA
CTCTTTTCCCTTGTCCTGGGCGTGGCCAAGGTACGAATGAGAGTATGTCC
TGTTTGATGGAGGGTGTGAAATTTGCCCGTGTCTCAGGAGGTGGAGGAGG
AAGATGAAGAAGAGATAGGCGCATCACTCTTGCGATTTCCTCCCTGATTC
CTTCGAATCCTTCCCCCCCATTCCACGCCCATCATTTCTGTTTTGCAGGC
GTTCCGCTTAACCACCACCAGCACGTTTCGCCTCCCTCTCTACCTCCCCA
CCTCCTTACACTCCTCCCACCATCGCCGCCTGCCCTCCAGTCGCCATTCT
TTGTCCTCGTCTTCTCCACCTCCGCTCCTCCTCTGCCGTTGCGCAGGCAC
CTCCTCTTCCTCCCCCTCCCCGTCCTCCTCAAGCCCCTACCCTTCCCCCT
CGACCATCCCCTCCACGCTGGCATGGGCCTCGTCCCTCCTCCTCTCTCAC
CAGGTGCCAGACGCCGAGCTCTCGGCGGAGTACCTGTTAATCCACACACT
ACAGCTCCCAGCCACCACCCCTCGCGCCGCCCTCTTTGAGTACGGGAGGA
AAAAAAAGGGGGAGGAAATGGAGATTCCGGAAGGTATTTCAATAGGATTG
AGGGGTGACATGGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGACGAA
AACGTAGCGAAAGAGACGAGAGGTTGCATGGCCGTTGCATCGTCATCGGC
AGTCCTCTCCCTCCCTTCCGCGATCGCAGGATTTCCCACTACGTACGTTT
GCCTCACCCCCTTCCTTCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCC
CCCTTTCTTAGCCACCCTCGCTGCCTATCACTCCCTGCTCCTCCGCCGAG
GGCAACGCCGGGAGCCAGTGCAATATCTCGTCGGCAGCTGGGACTTTCAC
CGTGTGCATCTTCTCGTTCTCCCCCCCATCCTCATCCCTCGCCCTGAGAC
GGAAGAGCTCGTGGAGTGGGTGTTGGAGGAGGAGAAGAGGGAGGGAGGGA
GGGAGAGGGGGAGGGAGGGAGGGGGGCGCCCACTGAGGTTTCTGGATATC
GGGTGTGGAACGGGGGCGATTGGCTTGGCCTTGTTGAATGCCTTTCGGGA
GGAGGCACCGGCAAGGTAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGT
GGGACGGTTGGATCGGCGGGATATGTGTAGTACATCGCCATTCCACCACC
CTACCTCCCCTCCTGCCCACTCAGAGCGCTTTCATGCGTCGCGCTTGACC
CTCATCCAACGGCCGGGTATCTTGCCAGAGAAAATGGGGCCCGACTTAAC
TTCCCTCCTCATGTATATGAAGTGGTGGCAGGCGCGATTGGGGAGGAGGA
GGAGGAGGAGGAGGAGGAGAGGGAGGGAGGGTTGATATCTCGCCTTCTGG
CTGCAGCCACTGGTGGAGGAGAAGGAGGAAGAGAAGGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGTAGGTTTGATTTTTTAGTGGCCAACCCGCC
GTACATTCCGGAGGAAGACATGGATGGCTTACAGGTAGGAAGGGAGAGGG
AGGAGGGAAGGGAGGGAGGGAGGGAGGAGAATTAGGAGGTAAGGACGAGG
GGTCTATACATTGCTATACTGGGCTTAGTTTCAGTCATGATTTCCCGTGT
TTGAGCTTCATTCTGTGGAGAGAGGGAGAGAGGGAGACGTGGGGCTACGC
TAGCAGAGGCAACTGGTAATTCGACGCCATCCCACTCCTTCTTACCTCCT
CACTTTCCCTCCCTCTTCCCTGCCGAACCTCCCTCCTTTTCTTAGCCCGA
AGTCAAGGCCTGGGAAGACCGTGGGGCGTTGGCAGGTGGGGACAAGGACG
GGACCCGCATCATTCGCGCAATCCTAAACGAAGCCCCACGACTATTGAAA
AGAATGGAGGGAGGGAGGGTGTGGATGGAGGTAGATGCGAGTCATCCGGC
TTTGTTTGCGGCGGAAGAGGAGGAGAAAATGAAGAGGAATGTGAAAGGAG
GGATGCGATTGATCGAATGGCGTAGGGACCTTTCGGGGAGACCCCGTTTT
TGCTGTTGGGCATGGAAGGGGGAGGAGGAAGGAGAAGGAGAAGGGGAGGG
AGAAGGAGGGGCGAAGAGGAACTGAATATAGACTACAATTAGATGCAACA
ACATTTTAAGAAGTCCTTGCGAAAA back to topCoding sequence (CDS) from alignment at chr3:1566972..1569496- >NO03G05470.1 ID=NO03G05470.1|Name=NO03G05470.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr3:1566972..1569496- (Nannochloropsis oceanica) ATGACAACCAACTCTGCTGCGATTGATACATCGATCTCTATCCACGGCCT CTGGCCAGGACAAGACGCGACACGGTACTGGTTGATCGACCAGGCGGAGG GAATACGGCGGGTGAGAGGCGATGTTACCCCCCCCCTACGCGCGCGAGGT GGACCACGACTTAGTCCGGGCCTGGCACTCTTTTCCCTTGTCCTGGGCGT GGCCAAGGCGTTCCGCTTAACCACCACCAGCACGTTTCGCCTCCCTCTCT ACCTCCCCACCTCCTTACACTCCTCCCACCATCGCCGCCTGCCCTCCAGT CGCCATTCTTTGTCCTCGTCTTCTCCACCTCCGCTCCTCCTCTGCCGTTG CGCAGGCACCTCCTCTTCCTCCCCCTCCCCGTCCTCCTCAAGCCCCTACC CTTCCCCCTCGACCATCCCCTCCACGCTGGCATGGGCCTCGTCCCTCCTC CTCTCTCACCAGGTGCCAGACGCCGAGCTCTCGGCGGAGTACCTGTTAAT CCACACACTACAGCTCCCAGCCACCACCCCTCGCGCCGCCCTCTTTGAGT ACGGGAGGAAAAAAAAGGGGGAGGAAATGGAGATTCCGGAAGCCACCCTC GCTGCCTATCACTCCCTGCTCCTCCGCCGAGGGCAACGCCGGGAGCCAGT GCAATATCTCGTCGGCAGCTGGGACTTTCACCGTGTGCATCTTCTCGTTC TCCCCCCCATCCTCATCCCTCGCCCTGAGACGGAAGAGCTCGTGGAGTGG GTGTTGGAGGAGGAGAAGAGGGAGGGAGGGAGGGAGAGGGGGAGGGAGGG AGGGGGGCGCCCACTGAGGTTTCTGGATATCGGGTGTGGAACGGGGGCGA TTGGCTTGGCCTTGTTGAATGCCTTTCGGGAGGAGGCACCGGCAAGAGCG CTTTCATGCGTCGCGCTTGACCCTCATCCAACGGCCGGGTATCTTGCCAG AGAAAATGGGGCCCGACTTAACTTCCCTCCTCATGTATATGAAGTGGTGG CAGGCGCGATTGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGGA GGGTTGATATCTCGCCTTCTGGCTGCAGCCACTGGTGGAGGAGAAGGAGG AAGAGAAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTAGGTTTG ATTTTTTAGTGGCCAACCCGCCGTACATTCCGGAGGAAGACATGGATGGC TTACAGCCCGAAGTCAAGGCCTGGGAAGACCGTGGGGCGTTGGCAGGTGG GGACAAGGACGGGACCCGCATCATTCGCGCAATCCTAAACGAAGCCCCAC GACTATTGAAAAGAATGGAGGGAGGGAGGGTGTGGATGGAGGTAGATGCG AGTCATCCGGCTTTGTTTGCGGCGGAAGAGGAGGAGAAAATGAAGAGGAA TGTGAAAGGAGGGATGCGATTGATCGAATGGCGTAGGGACCTTTCGGGGA GACCCCGTTTTTGCTGTTGGGCATGGAAGGGGGAGGAGGAAGGAGAAGGA GAAGGGGAGGGAGAAGGAGGGGCGAAGAGGAACTGA back to top
|