NO03G05470.1, NO03G05470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05470.1
Unique NameNO03G05470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1586
Alignment locationchr3:1566972..1569496 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1566972..1569496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G05470.1 vs.
Match: EWM30016.1 (hemk methyltransferase family member 1 [Nannochloropsis gaditana])

HSP 1 Score: 421.8 bits (1083), Expect = 3.100e-114
Identity = 231/374 (61.76%), Postives = 273/374 (72.99%), Query Frame = 0
Query:  128 SSSSPYPSPSTIPSTLAWASSLLLSHQVPDAELSAEYLLIHTLQLPATTPRAALFEY---GRKKKGEEMEIPEATLAAYHSLLLRRGQRREPVQYLVGSWDFHRVHLLVLPPILIPRPETEELVEWVLEEEKREGGRERGREGG-GRPLRFLDIGCGTGAIGLALLNAFREEAPARALSCVALDPHPTAGYLARENGARLNFPPHVYEVVAGAIGEEEEE--EEEEREGGLISRLLAAATGGGEGGREGEGGREGGREGGRFDFLVANPPYIPEEDMDGLQPEVKAWEDRGALAGGDKDGTRIIRAILNEAPRLLK----RMEGGRVWMEVDASHPALFAAEEEEKMKRNVKGGMRLIEWRRDLSGRPRFCCWA 492
            SS    P   TI ++LAWA+S LL H VPDA LSAEYLL+H L  P +TPR  L E    G ++KGE + +P  T AA+ SLL R G +REPVQYLVG WDFHR+HL + PP+LIPRPETEELVEWVLEEE RE G E G  GG   P+RFLD+GCG+GAIGLALL A+R+  P+R ++CVALDPHP A  LA+ N ARL FPP  Y+VV GA+GE++ E  EE E+EGG+++ LL A   GG  G   EG  E  R   +FDF+VANPPYIP+ DM  LQPEVK WED GALAGG  DGTRIIRAIL  APRLL+     M+  +VWMEVDASHP LFA EEEEK +R V G +RL+EWR+DLSG+PRFCCWA
Sbjct:   80 SSIFATPFSGTIAASLAWATSFLLDHNVPDAALSAEYLLLHALHYPPSTPRRVLHERVSEGSEEKGENV-VPPDTRAAFQSLLYRHGIKREPVQYLVGGWDFHRIHLALAPPVLIPRPETEELVEWVLEEEGREEGEEGGGGGGPNLPIRFLDVGCGSGAIGLALLWAYRDAWPSRDVTCVALDPHPAAVALAKANAARLGFPPSAYQVVQGALGEDKGEGGEEGEKEGGVVASLLGA---GGLKGGSIEGEWETKRR-KKFDFIVANPPYIPDADMGRLQPEVKDWEDPGALAGGGDDGTRIIRAILRAAPRLLEPNRIGMKKAKVWMEVDASHPLLFAKEEEEKERRKVGGELRLMEWRKDLSGKPRFCCWA 448          
The following BLAST results are available for this feature:
BLAST of NO03G05470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30016.13.100e-11461.76hemk methyltransferase family member 1 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05470NO03G05470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05470.1NO03G05470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05470.1.cds1NO03G05470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05470.1.cds2NO03G05470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05470.1.cds3NO03G05470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05470.1.cds4NO03G05470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05470.1.cds5NO03G05470.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05470.1.cds6NO03G05470.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05470.1 ID=NO03G05470.1|Name=NO03G05470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp
ATGACAACCAACTCTGCTGCGATTGATACATCGATCTCTATCCACGGCCT
CTGGCCAGGACAAGACGCGACACGGTACTGGTTGATCGACCAGGCGGAGG
GAATACGGCGGGTGAGAGGCGATGTTACCCCCCCCCTACGCGCGCGAGGT
GGACCACGACTTAGTCCGGGCCTGGCACTCTTTTCCCTTGTCCTGGGCGT
GGCCAAGGCGTTCCGCTTAACCACCACCAGCACGTTTCGCCTCCCTCTCT
ACCTCCCCACCTCCTTACACTCCTCCCACCATCGCCGCCTGCCCTCCAGT
CGCCATTCTTTGTCCTCGTCTTCTCCACCTCCGCTCCTCCTCTGCCGTTG
CGCAGGCACCTCCTCTTCCTCCCCCTCCCCGTCCTCCTCAAGCCCCTACC
CTTCCCCCTCGACCATCCCCTCCACGCTGGCATGGGCCTCGTCCCTCCTC
CTCTCTCACCAGGTGCCAGACGCCGAGCTCTCGGCGGAGTACCTGTTAAT
CCACACACTACAGCTCCCAGCCACCACCCCTCGCGCCGCCCTCTTTGAGT
ACGGGAGGAAAAAAAAGGGGGAGGAAATGGAGATTCCGGAAGCCACCCTC
GCTGCCTATCACTCCCTGCTCCTCCGCCGAGGGCAACGCCGGGAGCCAGT
GCAATATCTCGTCGGCAGCTGGGACTTTCACCGTGTGCATCTTCTCGTTC
TCCCCCCCATCCTCATCCCTCGCCCTGAGACGGAAGAGCTCGTGGAGTGG
GTGTTGGAGGAGGAGAAGAGGGAGGGAGGGAGGGAGAGGGGGAGGGAGGG
AGGGGGGCGCCCACTGAGGTTTCTGGATATCGGGTGTGGAACGGGGGCGA
TTGGCTTGGCCTTGTTGAATGCCTTTCGGGAGGAGGCACCGGCAAGAGCG
CTTTCATGCGTCGCGCTTGACCCTCATCCAACGGCCGGGTATCTTGCCAG
AGAAAATGGGGCCCGACTTAACTTCCCTCCTCATGTATATGAAGTGGTGG
CAGGCGCGATTGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGGA
GGGTTGATATCTCGCCTTCTGGCTGCAGCCACTGGTGGAGGAGAAGGAGG
AAGAGAAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTAGGTTTG
ATTTTTTAGTGGCCAACCCGCCGTACATTCCGGAGGAAGACATGGATGGC
TTACAGCCCGAAGTCAAGGCCTGGGAAGACCGTGGGGCGTTGGCAGGTGG
GGACAAGGACGGGACCCGCATCATTCGCGCAATCCTAAACGAAGCCCCAC
GACTATTGAAAAGAATGGAGGGAGGGAGGGTGTGGATGGAGGTAGATGCG
AGTCATCCGGCTTTGTTTGCGGCGGAAGAGGAGGAGAAAATGAAGAGGAA
TGTGAAAGGAGGGATGCGATTGATCGAATGGCGTAGGGACCTTTCGGGGA
GACCCCGTTTTTGCTGTTGGGCATGGAAGGGGGAGGAGGAAGGAGAAGGA
GAAGGGGAGGGAGAAGGAGGGGCGAAGAGGAACTGAATATAGACTACAAT
TAGATGCAACAACATTTTAAGAAGTCCTTGCGAAAA
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protein sequence of NO03G05470.1

>NO03G05470.1-protein ID=NO03G05470.1-protein|Name=NO03G05470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MTTNSAAIDTSISIHGLWPGQDATRYWLIDQAEGIRRVRGDVTPPLRARG
GPRLSPGLALFSLVLGVAKAFRLTTTSTFRLPLYLPTSLHSSHHRRLPSS
RHSLSSSSPPPLLLCRCAGTSSSSPSPSSSSPYPSPSTIPSTLAWASSLL
LSHQVPDAELSAEYLLIHTLQLPATTPRAALFEYGRKKKGEEMEIPEATL
AAYHSLLLRRGQRREPVQYLVGSWDFHRVHLLVLPPILIPRPETEELVEW
VLEEEKREGGRERGREGGGRPLRFLDIGCGTGAIGLALLNAFREEAPARA
LSCVALDPHPTAGYLARENGARLNFPPHVYEVVAGAIGEEEEEEEEEREG
GLISRLLAAATGGGEGGREGEGGREGGREGGRFDFLVANPPYIPEEDMDG
LQPEVKAWEDRGALAGGDKDGTRIIRAILNEAPRLLKRMEGGRVWMEVDA
SHPALFAAEEEEKMKRNVKGGMRLIEWRRDLSGRPRFCCWAWKGEEEGEG
EGEGEGGAKRN*
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mRNA from alignment at chr3:1566972..1569496-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05470.1 ID=NO03G05470.1|Name=NO03G05470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2525bp|location=Sequence derived from alignment at chr3:1566972..1569496- (Nannochloropsis oceanica)
ATGGTAAGATGAACCCAAGTCCACTCGCACACACCAAAAACAGCCGGCAG TCTGCCAAGGAGCCGACCTACTCCAAGTCCGGCTCCGACTCAACACCACT TCTCTCAGAAGCTATGCCTACCTAATGTGTTTTCGTCTATTTCTTCGCCC TACGCCACCACCACCATCACCATCAGACAACCAACTCTGCTGCGATTGAT ACATCGATCTCTATCCACGGCCTCTGGCCAGGACAAGACGCGACACGGTA CTGGTTGATCGACCAGGCGGAGGGAATACGGCGGGTGAGAGGCGATGTTA CCCCCCCCCTACGCGCGCGAGGTGGACCACGACTTAGTCCGGGCCTGGCA CTCTTTTCCCTTGTCCTGGGCGTGGCCAAGGTACGAATGAGAGTATGTCC TGTTTGATGGAGGGTGTGAAATTTGCCCGTGTCTCAGGAGGTGGAGGAGG AAGATGAAGAAGAGATAGGCGCATCACTCTTGCGATTTCCTCCCTGATTC CTTCGAATCCTTCCCCCCCATTCCACGCCCATCATTTCTGTTTTGCAGGC GTTCCGCTTAACCACCACCAGCACGTTTCGCCTCCCTCTCTACCTCCCCA CCTCCTTACACTCCTCCCACCATCGCCGCCTGCCCTCCAGTCGCCATTCT TTGTCCTCGTCTTCTCCACCTCCGCTCCTCCTCTGCCGTTGCGCAGGCAC CTCCTCTTCCTCCCCCTCCCCGTCCTCCTCAAGCCCCTACCCTTCCCCCT CGACCATCCCCTCCACGCTGGCATGGGCCTCGTCCCTCCTCCTCTCTCAC CAGGTGCCAGACGCCGAGCTCTCGGCGGAGTACCTGTTAATCCACACACT ACAGCTCCCAGCCACCACCCCTCGCGCCGCCCTCTTTGAGTACGGGAGGA AAAAAAAGGGGGAGGAAATGGAGATTCCGGAAGGTATTTCAATAGGATTG AGGGGTGACATGGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGACGAA AACGTAGCGAAAGAGACGAGAGGTTGCATGGCCGTTGCATCGTCATCGGC AGTCCTCTCCCTCCCTTCCGCGATCGCAGGATTTCCCACTACGTACGTTT GCCTCACCCCCTTCCTTCCTTCCTCCCTCCCTTCCTCCCTCCCTCCCTCC CCCTTTCTTAGCCACCCTCGCTGCCTATCACTCCCTGCTCCTCCGCCGAG GGCAACGCCGGGAGCCAGTGCAATATCTCGTCGGCAGCTGGGACTTTCAC CGTGTGCATCTTCTCGTTCTCCCCCCCATCCTCATCCCTCGCCCTGAGAC GGAAGAGCTCGTGGAGTGGGTGTTGGAGGAGGAGAAGAGGGAGGGAGGGA GGGAGAGGGGGAGGGAGGGAGGGGGGCGCCCACTGAGGTTTCTGGATATC GGGTGTGGAACGGGGGCGATTGGCTTGGCCTTGTTGAATGCCTTTCGGGA GGAGGCACCGGCAAGGTAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGT GGGACGGTTGGATCGGCGGGATATGTGTAGTACATCGCCATTCCACCACC CTACCTCCCCTCCTGCCCACTCAGAGCGCTTTCATGCGTCGCGCTTGACC CTCATCCAACGGCCGGGTATCTTGCCAGAGAAAATGGGGCCCGACTTAAC TTCCCTCCTCATGTATATGAAGTGGTGGCAGGCGCGATTGGGGAGGAGGA GGAGGAGGAGGAGGAGGAGAGGGAGGGAGGGTTGATATCTCGCCTTCTGG CTGCAGCCACTGGTGGAGGAGAAGGAGGAAGAGAAGGGGAGGGAGGGAGG GAGGGAGGGAGGGAGGGAGGTAGGTTTGATTTTTTAGTGGCCAACCCGCC GTACATTCCGGAGGAAGACATGGATGGCTTACAGGTAGGAAGGGAGAGGG AGGAGGGAAGGGAGGGAGGGAGGGAGGAGAATTAGGAGGTAAGGACGAGG GGTCTATACATTGCTATACTGGGCTTAGTTTCAGTCATGATTTCCCGTGT TTGAGCTTCATTCTGTGGAGAGAGGGAGAGAGGGAGACGTGGGGCTACGC TAGCAGAGGCAACTGGTAATTCGACGCCATCCCACTCCTTCTTACCTCCT CACTTTCCCTCCCTCTTCCCTGCCGAACCTCCCTCCTTTTCTTAGCCCGA AGTCAAGGCCTGGGAAGACCGTGGGGCGTTGGCAGGTGGGGACAAGGACG GGACCCGCATCATTCGCGCAATCCTAAACGAAGCCCCACGACTATTGAAA AGAATGGAGGGAGGGAGGGTGTGGATGGAGGTAGATGCGAGTCATCCGGC TTTGTTTGCGGCGGAAGAGGAGGAGAAAATGAAGAGGAATGTGAAAGGAG GGATGCGATTGATCGAATGGCGTAGGGACCTTTCGGGGAGACCCCGTTTT TGCTGTTGGGCATGGAAGGGGGAGGAGGAAGGAGAAGGAGAAGGGGAGGG AGAAGGAGGGGCGAAGAGGAACTGAATATAGACTACAATTAGATGCAACA ACATTTTAAGAAGTCCTTGCGAAAA
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Coding sequence (CDS) from alignment at chr3:1566972..1569496-

>NO03G05470.1 ID=NO03G05470.1|Name=NO03G05470.1|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at chr3:1566972..1569496- (Nannochloropsis oceanica)
ATGACAACCAACTCTGCTGCGATTGATACATCGATCTCTATCCACGGCCT
CTGGCCAGGACAAGACGCGACACGGTACTGGTTGATCGACCAGGCGGAGG
GAATACGGCGGGTGAGAGGCGATGTTACCCCCCCCCTACGCGCGCGAGGT
GGACCACGACTTAGTCCGGGCCTGGCACTCTTTTCCCTTGTCCTGGGCGT
GGCCAAGGCGTTCCGCTTAACCACCACCAGCACGTTTCGCCTCCCTCTCT
ACCTCCCCACCTCCTTACACTCCTCCCACCATCGCCGCCTGCCCTCCAGT
CGCCATTCTTTGTCCTCGTCTTCTCCACCTCCGCTCCTCCTCTGCCGTTG
CGCAGGCACCTCCTCTTCCTCCCCCTCCCCGTCCTCCTCAAGCCCCTACC
CTTCCCCCTCGACCATCCCCTCCACGCTGGCATGGGCCTCGTCCCTCCTC
CTCTCTCACCAGGTGCCAGACGCCGAGCTCTCGGCGGAGTACCTGTTAAT
CCACACACTACAGCTCCCAGCCACCACCCCTCGCGCCGCCCTCTTTGAGT
ACGGGAGGAAAAAAAAGGGGGAGGAAATGGAGATTCCGGAAGCCACCCTC
GCTGCCTATCACTCCCTGCTCCTCCGCCGAGGGCAACGCCGGGAGCCAGT
GCAATATCTCGTCGGCAGCTGGGACTTTCACCGTGTGCATCTTCTCGTTC
TCCCCCCCATCCTCATCCCTCGCCCTGAGACGGAAGAGCTCGTGGAGTGG
GTGTTGGAGGAGGAGAAGAGGGAGGGAGGGAGGGAGAGGGGGAGGGAGGG
AGGGGGGCGCCCACTGAGGTTTCTGGATATCGGGTGTGGAACGGGGGCGA
TTGGCTTGGCCTTGTTGAATGCCTTTCGGGAGGAGGCACCGGCAAGAGCG
CTTTCATGCGTCGCGCTTGACCCTCATCCAACGGCCGGGTATCTTGCCAG
AGAAAATGGGGCCCGACTTAACTTCCCTCCTCATGTATATGAAGTGGTGG
CAGGCGCGATTGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAGGGA
GGGTTGATATCTCGCCTTCTGGCTGCAGCCACTGGTGGAGGAGAAGGAGG
AAGAGAAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTAGGTTTG
ATTTTTTAGTGGCCAACCCGCCGTACATTCCGGAGGAAGACATGGATGGC
TTACAGCCCGAAGTCAAGGCCTGGGAAGACCGTGGGGCGTTGGCAGGTGG
GGACAAGGACGGGACCCGCATCATTCGCGCAATCCTAAACGAAGCCCCAC
GACTATTGAAAAGAATGGAGGGAGGGAGGGTGTGGATGGAGGTAGATGCG
AGTCATCCGGCTTTGTTTGCGGCGGAAGAGGAGGAGAAAATGAAGAGGAA
TGTGAAAGGAGGGATGCGATTGATCGAATGGCGTAGGGACCTTTCGGGGA
GACCCCGTTTTTGCTGTTGGGCATGGAAGGGGGAGGAGGAAGGAGAAGGA
GAAGGGGAGGGAGAAGGAGGGGCGAAGAGGAACTGA
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Synonyms
Publications