NO03G05450.1, NO03G05450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05450.1
Unique NameNO03G05450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1548
Alignment locationchr3:1558844..1561715 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1558844..1561715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05450.1 vs.
Match: EWM30007.1 (tetratricopeptide repeat family protein [Nannochloropsis gaditana])

HSP 1 Score: 512.7 bits (1319), Expect = 1.300e-141
Identity = 270/377 (71.62%), Postives = 293/377 (77.72%), Query Frame = 0 
Query:    2 LSSRRLLFLGALERFLNKGGRIGKVTVAGTGLVGE-------EALALGFQPTTP--AP---EDPSISPILNGDLQQTLPHLRALSLTPGGSASALVLNILGRLEHDAQNFKTAADLYTQALTLHPNSSSIFQNLGGAFASQGEHQLAFASFQRAIDLNVNDRYTYFKLGIMYEQLATGKFKEAAEHALSCYAFYVDGREGGRDTDALTIYGNLLLTRLCPEEAVAVYKRALALEEGLWNVWFNLANAYLKLGLKAEAIAALQRTLALNPKV-----------------------PTDTDPAYVVELFDYYAPTYDQHMKEGLLYTAPRILRQEVRKVLNHTLFSEGALGPVTAEGSNEALTRALNKSMRILDLGCGT 344
            LS    L LGA+ERFLN+GGRIG+VTV   G  G         A ALGF+P  P  AP   +  +  P+L G L   LP L+ALS     S SAL+LN+LGRLEHDAQNFK A+DLYTQALTL PNSS+IFQNLG AFASQGEHQLAFASFQRAIDLN NDRYTYFKLG+MYEQLATGK+KEAAEHALSCYAFYVDGREGG DTDALTIYGNLL+ RLCP EAV VYKRALALE GLWNVWFN+ANAYLK+G K +AI ALQ+TL+LNP V                       P + DPAYVVELFDYYAPTYDQHMKEGLLYTAPRILRQEVRKVLNHTLF+EGA+GPVT EGS EAL RALNKSMRILDLGCGT
Sbjct:  177 LSPAHSLILGAMERFLNRGGRIGQVTVGDAGQEGRGLEPLQASATALGFRPIPPEGAPAKDKGQAGRPVLQGGLTDVLPELQALSRDTSASGSALLLNVLGRLEHDAQNFKAASDLYTQALTLQPNSSTIFQNLGAAFASQGEHQLAFASFQRAIDLNANDRYTYFKLGMMYEQLATGKYKEAAEHALSCYAFYVDGREGGEDTDALTIYGNLLVKRLCPAEAVEVYKRALALEAGLWNVWFNMANAYLKIGEKEDAIIALQQTLSLNPNVSAARHLLLSITGAQGGGEGGAAAPVEADPAYVVELFDYYAPTYDQHMKEGLLYTAPRILRQEVRKVLNHTLFTEGAMGPVTPEGSGEALLRALNKSMRILDLGCGT 553
The following BLAST results are available for this feature:
BLAST of NO03G05450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30007.11.300e-14171.62tetratricopeptide repeat family protein [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05450NO03G05450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05450.1NO03G05450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05450.1.cds1NO03G05450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05450.1.cds2NO03G05450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05450.1.cds3NO03G05450.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05450.1.cds4NO03G05450.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05450.1.cds5NO03G05450.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05450.1.cds6NO03G05450.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05450.1.cds7NO03G05450.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05450.1 ID=NO03G05450.1|Name=NO03G05450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp
ATGCTGTCTTCCCGCCGGCTCCTCTTTTTGGGGGCTTTGGAACGATTTTT
GAATAAAGGAGGACGAATCGGCAAGGTCACAGTGGCGGGAACAGGATTGG
TGGGAGAGGAGGCACTGGCCCTCGGGTTCCAACCCACAACTCCTGCGCCC
GAGGACCCCTCCATCTCCCCCATCCTCAATGGGGACCTCCAACAAACCCT
CCCCCACCTCCGTGCCCTCTCCCTCACCCCCGGCGGATCTGCCTCCGCCT
TGGTTCTCAACATACTCGGCCGTTTGGAGCACGATGCCCAAAACTTCAAG
ACGGCGGCCGACTTGTACACACAAGCCCTCACCCTACACCCCAACTCCTC
CTCAATCTTCCAAAATCTGGGGGGGGCCTTCGCGTCCCAAGGAGAGCACC
AACTGGCGTTTGCCTCCTTCCAACGTGCCATTGACTTAAACGTTAACGAC
CGTTACACGTATTTCAAACTGGGTATCATGTACGAGCAGCTGGCGACGGG
TAAATTCAAAGAGGCGGCGGAACATGCCTTGAGTTGCTATGCGTTTTATG
TGGATGGGAGGGAGGGAGGGAGGGACACCGACGCCTTGACCATCTACGGA
AATCTCCTGTTGACGCGCTTGTGTCCCGAGGAGGCTGTGGCGGTGTACAA
GCGGGCGTTGGCGCTGGAGGAGGGGCTGTGGAATGTGTGGTTTAATTTGG
CGAATGCCTACCTGAAGCTGGGGCTGAAGGCGGAGGCCATCGCCGCCCTC
CAGCGCACCTTGGCTCTTAATCCCAAGGTACCCACGGATACAGACCCGGC
CTATGTAGTGGAGCTGTTTGACTACTACGCCCCTACCTATGACCAGCACA
TGAAGGAAGGACTCCTCTACACCGCCCCTCGCATCCTCCGACAAGAAGTG
CGGAAGGTACTGAACCACACCCTCTTCTCTGAAGGAGCGCTGGGGCCAGT
CACAGCGGAAGGGAGCAACGAAGCTCTCACACGCGCGCTCAATAAAAGCA
TGCGAATCCTTGACCTGGGCTGTGGCACGGGCCTGTGCGGCGCGTGGTTC
ACCGATTACTCTACCCGGATGGTGGGGGTCGACCTCTCCCCCAAGATGCT
AGCCCAGGCCCAGAAGAAGCTTGTCTACGACGAGCTCTACGACCGCGACT
TGCGCGAGTGGGTCAAGGAAGAGGCTACCAAGAGCCCCGCCCCTACGTAC
GACATAATCGTCTCCGCGGACGTCCTGCAATACCTGGGCTCGCTCGAGGA
GGTCTTCCTGTCCACTTCCCTCCTCCTCGAACCTCGCCGCGGTTTGTTCG
CCTTTACTCTGGAGGAGCTGCAGGCTGATTATGGGCAGGCAGCGAGGGAC
GGAGGGAGGGCGGCCCGTGGATTCACGCTTGGAGAGACAGGTCGGTTCCT
CCACACGAGGGCCTACGTGGAGCGAGCCTTGGCTCATGCCGGGTTGGCGG
TAGAAACGGCTATCAGTTACTCCCCGCGCGTGGAGAGGGGGGAACCTGTC
CCGGGGTTTCTGTACGTCGTGAGACGGAAAAGGGACGGGTTGGTTTGA
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protein sequence of NO03G05450.1

>NO03G05450.1-protein ID=NO03G05450.1-protein|Name=NO03G05450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MLSSRRLLFLGALERFLNKGGRIGKVTVAGTGLVGEEALALGFQPTTPAP
EDPSISPILNGDLQQTLPHLRALSLTPGGSASALVLNILGRLEHDAQNFK
TAADLYTQALTLHPNSSSIFQNLGGAFASQGEHQLAFASFQRAIDLNVND
RYTYFKLGIMYEQLATGKFKEAAEHALSCYAFYVDGREGGRDTDALTIYG
NLLLTRLCPEEAVAVYKRALALEEGLWNVWFNLANAYLKLGLKAEAIAAL
QRTLALNPKVPTDTDPAYVVELFDYYAPTYDQHMKEGLLYTAPRILRQEV
RKVLNHTLFSEGALGPVTAEGSNEALTRALNKSMRILDLGCGTGLCGAWF
TDYSTRMVGVDLSPKMLAQAQKKLVYDELYDRDLREWVKEEATKSPAPTY
DIIVSADVLQYLGSLEEVFLSTSLLLEPRRGLFAFTLEELQADYGQAARD
GGRAARGFTLGETGRFLHTRAYVERALAHAGLAVETAISYSPRVERGEPV
PGFLYVVRRKRDGLV*
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mRNA from alignment at chr3:1558844..1561715+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05450.1 ID=NO03G05450.1|Name=NO03G05450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2872bp|location=Sequence derived from alignment at chr3:1558844..1561715+ (Nannochloropsis oceanica)
ATGCTGTCTTCCCGCCGGCTCCTCTTTTTGGGGGCTTTGGAACGATTTTT
GAATAAAGGAGGACGAATCGGCAAGGTCACAGTGGCGGGAACAGGATTGG
TGGGAGAGGAGGCACTGGCCCTCGGGTTCCAACCCACAACTCCTGCGCCC
GAGGACCCCTCCATCTCCCCCATCCTCAATGGGGACCTCCAACAAACCCT
CCCCCACCTCCGTGCCCTCTCCCTCACCCCCGGCGGATCTGCCTCCGCCT
TGGTTCTCAACATACTCGGCCGTTTGGAGCACGATGCCCAAAACTTCAAG
ACGGCGGCCGACTTGTACACACAAGCCCTCACCCTACACCCCAACTCCTC
CTCAATCTTCCAAAATCTGGGGGGGGCCTTCGCGTCCCAAGGAGAGCACC
AACTGGCGTTTGCCTCCTTCCAACGTGCCATTGACTTAAACGTTAACGAC
CGTTACACGTATTTCAAACTGGGTATCATGTACGAGCAGCTGGCGACGGG
TAAATTCAAAGAGGCGGCGGAACATGCCTTGAGTTGCTATGCGTTTTATG
TGGATGGGAGGGAGGGAGGGAGGGACACCGACGCCTTGACCATCTACGGA
AATCTCCTGTTGACGCGCTTGTGTCCCGAGGAGGCTGTGGCGGTGTACAA
GCGGGCGTTGGCGCTGGAGGAGGGGCTGTGGAATGTGTGGTTTAATTTGG
CGAATGCCTACCTGAAGCTGGGGCTGAAGGCGGAGGTAGGGGGGAGGGAG
GGAGGGATGGAGGGAAGGAGGGGCGTTTAATTGTCTTAAATTATCTAATT
CCTCTCGTCTTCCTCCTCTTATTCTCCTTTGTCGACGCCACCCTTGGATC
CCTACCTTCCCTCTTTCCCTCATTCCTTCTCTCCCCCCCTCCCTCATTCC
CTTAGGCCATCGCCGCCCTCCAGCGCACCTTGGCTCTTAATCCCAAGGTG
ACCGCCGCGAGGCACCTCCTCCTCTCCATCTCCGGGGGGGGGGCAGGGGA
GAGGAAGGGGGAGAGGGAGGGGTGCAGGTACCCACGGATACAGACCCGGC
CTATGTAGTGGAGCTGTTTGACTACTACGCCCCTACCTATGACCAGCACA
TGAAGGAAGGGTGAGCGATGCGATCCCTGCCTCTTTTTCTCCCTTCCCCC
CTCCTTTCTTCCCTCCGTAAGGCTGTCTTCGTCTCCTCCTTGCATGTTGT
AAACTGTGTCTCTAACCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCA
GACTCCTCTACACCGCCCCTCGCATCCTCCGACAAGAAGTGCGGAAGGTA
CTGAACCACACCCTCTTCTCTGAAGGAGCGCTGGGGCCAGTCACAGCGGA
AGGGAGCAACGAAGCTCTCACACGCGCGCTCAATAAAAGCATGCGAATCC
TTGACCTGGGCTGTGGCACGGTACATCCCTTGTTTTCCTCCCTCCCTCCC
TCCCTCCCTCTCTCCCTCCTTCGCTTTCCTTTATCTGCGTTCTTGGCCAT
GGCAGGATACCTTCGCTCAACCTCCCTCCCTCCCTCCCTCCCTGCCTCCC
TGCCTCCCTCAGGGCCTGTGCGGCGCGTGGTTCACCGATTACTCTACCCG
GATGGTGGGGGTCGACCTCTCCCCCAAGATGCTAGCCCAGGCCCAGAAGA
AGCTTGTCTACGACGAGCTCTACGACCGCGACTTGCGCGAGTGGGTCAAG
GAAGAGGCTACCAAGAGGTACCTACGTCTTGCCCCCCTTCCCTCCCTCCC
TCGGTTGTGGTGCTGGTTTGTCTTGTGGTTGTACAGATCGGATCGGGCCG
TGGGACTCGTTCCAGGTCACCAGGTGGAGGAGCCGAGAAACACCCTTCAC
TCACACACTCACAAATACACAAATGCATTGGTCATGTACAAATATGTTTA
TGTATCGCAAAAACACCAATACGTATATCATATTTAAAAAAATGTATATA
CAAGTACACATACATACAAGTACACATATACACATATATATACATATATA
TACATATATATACATATATATATATATATGTATGTATGCTTACATATAAA
CATATGCACACATTATTATAAACACGCGTATACACAGCCCCGCCCCTACG
TACGACATAATCGTCTCCGCGGACGTCCTGCAATACCTGGGCTCGCTCGA
GGAGGTCTTCCTGTCCACTTCCCTCCTCCTCGAACCTCGCCGCGGTTTGT
TCGCCTTTACTCTGGAGGAGCTGCAGGCTGATTATGGGCAGGCAGCGAGG
GACGGAGGGAGGGCGGCCCGTGGATTCACGCTTGGAGAGACAGGTGGGTG
GGTATGGTTGTGGGTGAATGTGGATGTGGATGGATAGGGGTAGATTTGGG
TGGGTGTGGGTGAATGTGGATGTGAATATTAGATGGATATTGATGTGGGT
GGGTGTAAGTGTGGGTTGATGTGGGTGTGGGTGGTGCATGGGTGGGTGTG
GATGTGAATATTAGATGGATATTGATGCGGGTGGATGTGGGTGTGGATGC
GGGGATGGGTAGGTCGGCTGGTGGATCTACACAAGTTTCCAGGTTTTCGG
GTCCATGGGTTCACTCCATACTTGCCTGTCTCTCTGTCTCCTTCATTTTC
CTCTGACAGTGTGGCCCTCCCATTGATTTGGGATGGACATATATTCATCG
CTCCCTCCCTCCATTCCTCCTTCCCTCCTTCCCTCCTCCCTCCCTCCCTC
CCTCCCTCCTCCAGGTCGGTTCCTCCACACGAGGGCCTACGTGGAGCGAG
CCTTGGCTCATGCCGGGTTGGCGGTAGAAACGGCTATCAGTTACTCCCCG
CGCGTGGAGAGGGGGGAACCTGTCCCGGGGTTTCTGTACGTCGTGAGACG
GAAAAGGGACGGGTTGGTTTGA
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Coding sequence (CDS) from alignment at chr3:1558844..1561715+

>NO03G05450.1 ID=NO03G05450.1|Name=NO03G05450.1|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at chr3:1558844..1561715+ (Nannochloropsis oceanica)
ATGCTGTCTTCCCGCCGGCTCCTCTTTTTGGGGGCTTTGGAACGATTTTT
GAATAAAGGAGGACGAATCGGCAAGGTCACAGTGGCGGGAACAGGATTGG
TGGGAGAGGAGGCACTGGCCCTCGGGTTCCAACCCACAACTCCTGCGCCC
GAGGACCCCTCCATCTCCCCCATCCTCAATGGGGACCTCCAACAAACCCT
CCCCCACCTCCGTGCCCTCTCCCTCACCCCCGGCGGATCTGCCTCCGCCT
TGGTTCTCAACATACTCGGCCGTTTGGAGCACGATGCCCAAAACTTCAAG
ACGGCGGCCGACTTGTACACACAAGCCCTCACCCTACACCCCAACTCCTC
CTCAATCTTCCAAAATCTGGGGGGGGCCTTCGCGTCCCAAGGAGAGCACC
AACTGGCGTTTGCCTCCTTCCAACGTGCCATTGACTTAAACGTTAACGAC
CGTTACACGTATTTCAAACTGGGTATCATGTACGAGCAGCTGGCGACGGG
TAAATTCAAAGAGGCGGCGGAACATGCCTTGAGTTGCTATGCGTTTTATG
TGGATGGGAGGGAGGGAGGGAGGGACACCGACGCCTTGACCATCTACGGA
AATCTCCTGTTGACGCGCTTGTGTCCCGAGGAGGCTGTGGCGGTGTACAA
GCGGGCGTTGGCGCTGGAGGAGGGGCTGTGGAATGTGTGGTTTAATTTGG
CGAATGCCTACCTGAAGCTGGGGCTGAAGGCGGAGGCCATCGCCGCCCTC
CAGCGCACCTTGGCTCTTAATCCCAAGGTACCCACGGATACAGACCCGGC
CTATGTAGTGGAGCTGTTTGACTACTACGCCCCTACCTATGACCAGCACA
TGAAGGAAGGACTCCTCTACACCGCCCCTCGCATCCTCCGACAAGAAGTG
CGGAAGGTACTGAACCACACCCTCTTCTCTGAAGGAGCGCTGGGGCCAGT
CACAGCGGAAGGGAGCAACGAAGCTCTCACACGCGCGCTCAATAAAAGCA
TGCGAATCCTTGACCTGGGCTGTGGCACGGGCCTGTGCGGCGCGTGGTTC
ACCGATTACTCTACCCGGATGGTGGGGGTCGACCTCTCCCCCAAGATGCT
AGCCCAGGCCCAGAAGAAGCTTGTCTACGACGAGCTCTACGACCGCGACT
TGCGCGAGTGGGTCAAGGAAGAGGCTACCAAGAGCCCCGCCCCTACGTAC
GACATAATCGTCTCCGCGGACGTCCTGCAATACCTGGGCTCGCTCGAGGA
GGTCTTCCTGTCCACTTCCCTCCTCCTCGAACCTCGCCGCGGTTTGTTCG
CCTTTACTCTGGAGGAGCTGCAGGCTGATTATGGGCAGGCAGCGAGGGAC
GGAGGGAGGGCGGCCCGTGGATTCACGCTTGGAGAGACAGGTCGGTTCCT
CCACACGAGGGCCTACGTGGAGCGAGCCTTGGCTCATGCCGGGTTGGCGG
TAGAAACGGCTATCAGTTACTCCCCGCGCGTGGAGAGGGGGGAACCTGTC
CCGGGGTTTCTGTACGTCGTGAGACGGAAAAGGGACGGGTTGGTTTGA
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Synonyms
Publications