NO03G05420.1, NO03G05420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05420.1
Unique NameNO03G05420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1105
Alignment locationchr3:1543318..1544422 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1543318..1544422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G05420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05420NO03G05420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05420.1NO03G05420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05420.1.cds1NO03G05420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05420.1 ID=NO03G05420.1|Name=NO03G05420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp
CGCACGCGACAGCTGGACCTTGTCCCCTTTCCCTTCTCTGCTTGTCCCTA
TGCACAAAGCACTGAATCTGCCTCAAACCCTACGTATAACTCATCACCTC
CTTTACGATACCATGATTGGTTCCTTTGCTTGCCCCCACCCTCGACCTTC
ATGAGTTTTTTCGAGCAACTCCGGTGTCTTCCACTTATGTCACAAATGCA
GTCATCAAGCTGAAGTCCCATTCAAATCCTGCCCATTTACACATCCACAG
CCACACAACTACTGTTCCCTCTTCAACAGAGCATTCCGAGCATGGTCGGT
GCTCTCGTCCTTGGGCGCTACGTGGCCGTCGCAAGCGCAACACGGCCCTT
GACCCTCCTGGCGTTCCCTGCTTACTATACGCGTTCCCTAACTGCCGATG
TGCACCAAAATCCCGCACAAGACCCCGATGAGGCGCATCAGGAGAGAAAA
TCGGCGGAAATGGAGCGGAGAATGCAAGCGCTCAAACGATTTGGTCTCCC
TAAGGCAATGGACGATAAGGTCATGTTGCCACAGGGCAAGCCGGTTGAGG
CAGGCGGGAAAAAGGAGCACGGGAAGGAGGAGGAAACACAGGATTGGAAC
GCGATCTACGGGGATTATATCTGGTACAGGGATAACCAGACGACCAAGGG
ATGGAAGAGCTGAGCAACCAAGGCAAGATTGGAAAGGAGGCATCGAGGAA
GTGAGGGAAGGGAGGCTGGGAGATAGGGGAACAAAGCTTGCATGATAAAT
TGACAACGAGCAGTTGTGACAACGTTGCGCGATACGAGAAATGAGGTCGA
CTCGAAAATTCTTTTGGAATACTGGCAGGGCAAAAATTTATGACTCGAAC
AGATTGGGAACGGTCGCATGAGGGCACGAGTACGAGGGCTGTGTGACATG
TACATGTTGGTGAAAATACGGGCTTGTGGACGGCCACGTAAAAGCAGATC
GGGGTCACGGAGGGCATGATTTGTTCGATACATGTATGATTAAAATTTAT
ATGGTTGTAGTTGAGTGCGAGCGAAGCCGAGAACCGTCGGTTAGCTTTCA
CGAGAGAGTTTAAAGAAATGAAGGAAATCTATAAATCAAAATAATCGAAC
TAGTT
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protein sequence of NO03G05420.1

>NO03G05420.1-protein ID=NO03G05420.1-protein|Name=NO03G05420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MVGALVLGRYVAVASATRPLTLLAFPAYYTRSLTADVHQNPAQDPDEAHQ
ERKSAEMERRMQALKRFGLPKAMDDKVMLPQGKPVEAGGKKEHGKEEETQ
DWNAIYGDYIWYRDNQTTKGWKS*
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mRNA from alignment at chr3:1543318..1544422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05420.1 ID=NO03G05420.1|Name=NO03G05420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp|location=Sequence derived from alignment at chr3:1543318..1544422- (Nannochloropsis oceanica)
CGCACGCGACAGCTGGACCTTGTCCCCTTTCCCTTCTCTGCTTGTCCCTA
TGCACAAAGCACTGAATCTGCCTCAAACCCTACGTATAACTCATCACCTC
CTTTACGATACCATGATTGGTTCCTTTGCTTGCCCCCACCCTCGACCTTC
ATGAGTTTTTTCGAGCAACTCCGGTGTCTTCCACTTATGTCACAAATGCA
GTCATCAAGCTGAAGTCCCATTCAAATCCTGCCCATTTACACATCCACAG
CCACACAACTACTGTTCCCTCTTCAACAGAGCATTCCGAGCATGGTCGGT
GCTCTCGTCCTTGGGCGCTACGTGGCCGTCGCAAGCGCAACACGGCCCTT
GACCCTCCTGGCGTTCCCTGCTTACTATACGCGTTCCCTAACTGCCGATG
TGCACCAAAATCCCGCACAAGACCCCGATGAGGCGCATCAGGAGAGAAAA
TCGGCGGAAATGGAGCGGAGAATGCAAGCGCTCAAACGATTTGGTCTCCC
TAAGGCAATGGACGATAAGGTCATGTTGCCACAGGGCAAGCCGGTTGAGG
CAGGCGGGAAAAAGGAGCACGGGAAGGAGGAGGAAACACAGGATTGGAAC
GCGATCTACGGGGATTATATCTGGTACAGGGATAACCAGACGACCAAGGG
ATGGAAGAGCTGAGCAACCAAGGCAAGATTGGAAAGGAGGCATCGAGGAA
GTGAGGGAAGGGAGGCTGGGAGATAGGGGAACAAAGCTTGCATGATAAAT
TGACAACGAGCAGTTGTGACAACGTTGCGCGATACGAGAAATGAGGTCGA
CTCGAAAATTCTTTTGGAATACTGGCAGGGCAAAAATTTATGACTCGAAC
AGATTGGGAACGGTCGCATGAGGGCACGAGTACGAGGGCTGTGTGACATG
TACATGTTGGTGAAAATACGGGCTTGTGGACGGCCACGTAAAAGCAGATC
GGGGTCACGGAGGGCATGATTTGTTCGATACATGTATGATTAAAATTTAT
ATGGTTGTAGTTGAGTGCGAGCGAAGCCGAGAACCGTCGGTTAGCTTTCA
CGAGAGAGTTTAAAGAAATGAAGGAAATCTATAAATCAAAATAATCGAAC
TAGTT
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Coding sequence (CDS) from alignment at chr3:1543318..1544422-

>NO03G05420.1 ID=NO03G05420.1|Name=NO03G05420.1|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at chr3:1543318..1544422- (Nannochloropsis oceanica)
ATGGTCGGTGCTCTCGTCCTTGGGCGCTACGTGGCCGTCGCAAGCGCAAC
ACGGCCCTTGACCCTCCTGGCGTTCCCTGCTTACTATACGCGTTCCCTAA
CTGCCGATGTGCACCAAAATCCCGCACAAGACCCCGATGAGGCGCATCAG
GAGAGAAAATCGGCGGAAATGGAGCGGAGAATGCAAGCGCTCAAACGATT
TGGTCTCCCTAAGGCAATGGACGATAAGGTCATGTTGCCACAGGGCAAGC
CGGTTGAGGCAGGCGGGAAAAAGGAGCACGGGAAGGAGGAGGAAACACAG
GATTGGAACGCGATCTACGGGGATTATATCTGGTACAGGGATAACCAGAC
GACCAAGGGATGGAAGAGCTGA
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Synonyms
Publications