NO03G05410.1, NO03G05410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05410.1
Unique NameNO03G05410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length774
Alignment locationchr3:1542449..1543311 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1542449..1543311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05410.1 vs.
Match: EWM30004.1 (mgmt family protein [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 1.100e-42
Identity = 96/175 (54.86%), Postives = 118/175 (67.43%), Query Frame = 0 
Query:   53 REVDMHDDHLSATHSTFDPALFEELVYACVNRVPRGRVTTYGHIARLCHHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAARLEEEGVALTQDSMGVWKVSAGAMWKTGQAQSLEDLLKEEGGGGEGEGGYVKKSKNGKERKRVNKQVVVDREGEGGEE 228
            ++   +D H     S FD ALF+ LV+ CV  VPRG+VTTYGHIARLCH PKHARHVG+AL+RLP NT VPWQR+INASY+IS RGDGG GA  QA RL EEGV ++QD+MGVW+V     W+TG AQSL +L+K      E +G   K+ K G+  K   K     +  EG +E
Sbjct:    4 KDAIFYDYHEEFAESKFDRALFDRLVHTCVTYVPRGKVTTYGHIARLCHCPKHARHVGQALRRLPLNTSVPWQRVINASYTISPRGDGGTGAEEQAMRLGEEGVTVSQDAMGVWRVPRSYAWETGSAQSLAELIKGRQAEEEEDGMTAKEVKEGESHKMKEKSRKRCKREEGTKE 178
The following BLAST results are available for this feature:
BLAST of NO03G05410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30004.11.100e-4254.86mgmt family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05410NO03G05410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05410.1NO03G05410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05410.1.cds1NO03G05410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05410.1.cds2NO03G05410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05410.1 ID=NO03G05410.1|Name=NO03G05410.1|organism=Nannochloropsis oceanica|type=mRNA|length=774bp
CGAAAGAGCGAGTCGTTGGAGTGTTTGCGAGAAGACGGATGTCATGATCA
TGTGCCAAGCACTCACATGTCGAAAAATGCACAAATGCCTAGACTAAGTA
TGAGACGGACAAGGCGTCGGGCAATGTATATTTATGCCGAGGAAGAGCTC
ACTCTCAAATTGAACACCTCTTCCGACATACACTTCCACCACCCCCACTC
ACCTCCTTTGGCAGCAGATCCACGGGAAGTTGACATGCACGACGACCACC
TCTCTGCCACCCACAGCACCTTTGACCCGGCATTGTTTGAAGAACTGGTG
TATGCATGCGTTAATCGCGTCCCCCGGGGCCGCGTCACTACCTACGGACA
CATTGCGCGCCTTTGTCACCATCCAAAGCATGCGCGGCATGTCGGAAAAG
CCCTGCAGCGCCTGCCTTCAAATACTCATGTTCCGTGGCAGCGAATTATC
AATGCGTCCTATTCCATTTCCTCGCGGGGGGACGGAGGCGCAGGCGCCCG
TCTGCAAGCTGCTAGGTTGGAGGAAGAAGGAGTGGCCCTGACTCAGGATT
CCATGGGCGTGTGGAAAGTTTCAGCGGGTGCTATGTGGAAGACAGGCCAG
GCACAGTCACTAGAGGACCTCTTAAAGGAAGAAGGTGGAGGGGGCGAGGG
AGAAGGAGGGTACGTGAAGAAGAGTAAGAACGGCAAGGAGCGAAAAAGGG
TGAATAAGCAAGTTGTTGTGGATAGAGAGGGAGAAGGAGGGGAAGAGGGG
GCACAATGACTCTCTGACTGTATA
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protein sequence of NO03G05410.1

>NO03G05410.1-protein ID=NO03G05410.1-protein|Name=NO03G05410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MSKNAQMPRLSMRRTRRRAMYIYAEEELTLKLNTSSDIHFHHPHSPPLAA
DPREVDMHDDHLSATHSTFDPALFEELVYACVNRVPRGRVTTYGHIARLC
HHPKHARHVGKALQRLPSNTHVPWQRIINASYSISSRGDGGAGARLQAAR
LEEEGVALTQDSMGVWKVSAGAMWKTGQAQSLEDLLKEEGGGGEGEGGYV
KKSKNGKERKRVNKQVVVDREGEGGEEGAQ*
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mRNA from alignment at chr3:1542449..1543311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05410.1 ID=NO03G05410.1|Name=NO03G05410.1|organism=Nannochloropsis oceanica|type=mRNA|length=863bp|location=Sequence derived from alignment at chr3:1542449..1543311+ (Nannochloropsis oceanica)
CGAAAGAGCGAGTCGTTGGAGTGTTTGCGAGAAGACGGATGTCATGATCA
TGTGCCAAGCACTCACATGTCGAAAAATGCACAAATGCCTAGACTAAGTA
TGAGACGGACAAGGCGTCGGGCAATGTATATTTATGCCGAGGAAGAGCTC
ACTCTCAAATTGAACACCTCTTCCGACATACACTTCCACCACCCCCACTC
ACCTCCTTTGGCAGCAGATCCACGGGAAGTTGACATGCACGACGACCACC
TCTCTGCCACCCACAGCACCTTTGACCCGGCATTGTTTGAAGAACTGGTG
TATGCATGCGTTAATCGCGTCCCCCGGGGCCGCGTCACTACCTACGGTAA
GTCGACAGCAAACCAGATTCTCTGCTTTTTTTGCTTAGCTGTCTTTCCTT
ACTATCCTCTTTTACTACACCGACTCCCAACGCAGGACACATTGCGCGCC
TTTGTCACCATCCAAAGCATGCGCGGCATGTCGGAAAAGCCCTGCAGCGC
CTGCCTTCAAATACTCATGTTCCGTGGCAGCGAATTATCAATGCGTCCTA
TTCCATTTCCTCGCGGGGGGACGGAGGCGCAGGCGCCCGTCTGCAAGCTG
CTAGGTTGGAGGAAGAAGGAGTGGCCCTGACTCAGGATTCCATGGGCGTG
TGGAAAGTTTCAGCGGGTGCTATGTGGAAGACAGGCCAGGCACAGTCACT
AGAGGACCTCTTAAAGGAAGAAGGTGGAGGGGGCGAGGGAGAAGGAGGGT
ACGTGAAGAAGAGTAAGAACGGCAAGGAGCGAAAAAGGGTGAATAAGCAA
GTTGTTGTGGATAGAGAGGGAGAAGGAGGGGAAGAGGGGGCACAATGACT
CTCTGACTGTATA
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Coding sequence (CDS) from alignment at chr3:1542449..1543311+

>NO03G05410.1 ID=NO03G05410.1|Name=NO03G05410.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr3:1542449..1543311+ (Nannochloropsis oceanica)
ATGTCGAAAAATGCACAAATGCCTAGACTAAGTATGAGACGGACAAGGCG
TCGGGCAATGTATATTTATGCCGAGGAAGAGCTCACTCTCAAATTGAACA
CCTCTTCCGACATACACTTCCACCACCCCCACTCACCTCCTTTGGCAGCA
GATCCACGGGAAGTTGACATGCACGACGACCACCTCTCTGCCACCCACAG
CACCTTTGACCCGGCATTGTTTGAAGAACTGGTGTATGCATGCGTTAATC
GCGTCCCCCGGGGCCGCGTCACTACCTACGGACACATTGCGCGCCTTTGT
CACCATCCAAAGCATGCGCGGCATGTCGGAAAAGCCCTGCAGCGCCTGCC
TTCAAATACTCATGTTCCGTGGCAGCGAATTATCAATGCGTCCTATTCCA
TTTCCTCGCGGGGGGACGGAGGCGCAGGCGCCCGTCTGCAAGCTGCTAGG
TTGGAGGAAGAAGGAGTGGCCCTGACTCAGGATTCCATGGGCGTGTGGAA
AGTTTCAGCGGGTGCTATGTGGAAGACAGGCCAGGCACAGTCACTAGAGG
ACCTCTTAAAGGAAGAAGGTGGAGGGGGCGAGGGAGAAGGAGGGTACGTG
AAGAAGAGTAAGAACGGCAAGGAGCGAAAAAGGGTGAATAAGCAAGTTGT
TGTGGATAGAGAGGGAGAAGGAGGGGAAGAGGGGGCACAATGA
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Synonyms
Publications