NO03G05400.1, NO03G05400.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO03G05400.1
Unique Name	NO03G05400.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2582
Alignment location	chr3:1539861..1542442 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr3	genome	chr3:1539861..1542442 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO03G05400.1 vs.
Match: EWM27126.1 (peptidase s8 and s53, partial [Nannochloropsis gaditana])

HSP 1 Score: 87.4 bits (215), Expect = 2.100e-13
Identity = 48/108 (44.44%), Postives = 57/108 (52.78%), Query Frame = 0

Query:   42 PVSAYQSLPRREQQGVAMGAWFCQFPRSSRANDAYTQQNCRLACDGSGVNKYPRCCVEAVVGNVCNDEEFKAAQQEGVQCEPETMTDCTTSAPATEPTKSEP--PSSV 148
            P  +    P R       G W+CQFPRS+R+NDA T +NC ++CD SG  K P CC    VG+VCNDEE  AAQ  GV C      +    APA  P    P  PS V
Sbjct:  397 PTRSPTEAPIRSPTKPVTGDWYCQFPRSTRSNDAQTIRNCLVSCDDSGFLKNPVCCPPLTVGSVCNDEEASAAQANGVACSTAARPEECAGAPAPNPPAPAPAAPSPV 504

The following BLAST results are available for this feature:

BLAST of NO03G05400.1 vs.

BLAST of NO03G05400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27126.1	2.100e-13	44.44	peptidase s8 and s53, partial [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO03G05400	NO03G05400	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05400.1	NO03G05400.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO03G05400.1.cds1	NO03G05400.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr3:1539861..1542442-
coding sequence from alignment at chr3:1539861..1542442-

mRNA sequence

>NO03G05400.1 ID=NO03G05400.1|Name=NO03G05400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2582bp
CTTGTAAACCGACGTTGAGCCGTTGCACTCATGGTTCCCTCCTCGTTGCC
TAGCTGCCAGCTTAGCTTGGCCACGATTTTGAAAGATAGCACGCCGGCAT
TTCCTCTTCACGTAGCAAAGAGGCTTGCATGGGTTCATTGCCGTCCAATG
CCGCAAGCACTCACAAACAATAGGCTCATGCAATGAAGACGGTCTCCGCA
CCACCACGAGCAAGGGCAAGAAATAGGAGGAGAGGCCAGCGACGACTTTG
TGTCCCATATCTTCTCCCGCTCCCCCTCCTCATGTTCCTATTCCTCGCAC
TAGCCCCCGTCTCCGCCTACCAGTCTCTACCACGTCGTGAGCAGCAAGGG
GTCGCCATGGGTGCCTGGTTTTGCCAATTTCCTCGCTCCAGCCGTGCCAA
CGACGCCTACACTCAGCAAAATTGTCGCTTAGCCTGTGATGGCAGCGGAG
TCAACAAGTACCCCAGATGTTGTGTGGAGGCAGTGGTCGGAAACGTGTGC
AACGACGAGGAATTCAAGGCGGCGCAACAGGAGGGAGTGCAGTGCGAGCC
CGAAACAATGACAGACTGCACGACAAGTGCTCCAGCTACTGAACCAACCA
AATCTGAACCACCTTCATCTGTGACCGAAGTTTCTGCGTCTACGACTGCG
TCACCTACAACCCTTTTTTCGCCACACCCCTCCCGTGCCCCTACTCGTGG
TCCTACCTTCACACCGCACGTCGTCCCCGCACAGGACAAGGACGAGGAAA
AAGAAGAGGTTTCTGCAGACATAGACAAATCTAGCAAGAAAACGCACATT
GTTGTGGTCGTTGGCGTGGGGGGCCTTCTGCTTGCGCTCTCTTGTTTCTT
CATATGCTGCCTGAGCATCAGGCGGTCGAGCAGGCGGCAGCAGCAAGTAC
GAGGAGGAGGGGGAGGGGGAGGGGGGGGCATCAACAACCTACAGGCCCCA
CCACTGGCTGTGGCCGCGTTATACTATGACGAGGATGACAACAACGCTGC
TGGTGGTAGCCTTGGAGTGCACAGCCCCGTCACTTATGATTCGAACGGGG
CCTTGATTGGGCAGCCTTTGGAAAGTCATACATCTCCTTTGCCTTCTCCT
TCCGCCCCTCCTTCAGCGCCCCCACCCGTCACAACGTTTCCTGCAGTATC
TCCTCTTCCTATTACCGTATCACCGCCCACCTCTCCTGCATTCGATCCGT
TTGGCGTCGCGGCGATTGACTACATGGGAGTGTCGGGGGGGTGGCCACCC
ACACCCACGGCCCTCAGTAAGGTAAGGGCAGCAGCAGCAGCAGCAGCGGC
AGAAACAACAAGTAGCTCCAATCTCCCACCACCAGCACCAGTATTTACAC
AAACACGAAGAAATGGAGCTCGGGTGACAGCAGCTGGCTCGCGGTTGTCG
TTCACGACGGACGGATATGCGGACTTGATGCGCTTGCTCGTGTCGTCGTC
GTCCCCCTCCTCCTCCTCCTCCTCCTCGTCGTCCTCCTCCAACACTCTCC
TCCTTCATGCCATCGACTTTCGCCTTAATCCACTCCCCTACCGCCTTCAG
GCCCATGAGGCTCTTTTTCGAGGCCGCTTCGGGTGTTCGCTGCCCCCTCC
CTTGCCAGTGGTAGCAGTAGCAAGCTCAATCGCCCAGACCGGGAGCAATC
GAATCATCGTCGTCCCCGCCACAGGAAATCACAGCGCCGATGAGAATGAA
GAAGAGGGAGAGGAGGAAGAGCAGCTGCGGCACCAGAGCTCGGCGGGAGT
ACCGGTTATCGTGCAGACCATATTTACCCCTGTGCCTCGCAGTGCTGCCC
CTGCCCTCAACGACGAGCTTAGGCGATGGAAGGCCTTACCCGCCAATCCA
CACCTGCTGACGCTGCGGGGTGTGGTCTGCCGAGGAGATAAACGAAGGCT
GTCTATTGTGTGGGATGCCTGGCCCAAGGGAAGGACGACATTGCGTGCAT
GGTTGTTCTCTCCCCCTTCTTCCACCAGAGGTGGGAGGGACGTGCCGGAT
CGACTGAGTAGGCGCTCGGCCGACACATGCAACAACATTACCAGCAATCA
GAGTGGCACGAAGCCACAACAGCAGTCACTGGAAGCGCGAGCTGCATTGC
TGGGTCTAGTGGGGCGACAGCTCATCGATGCCTTGGTGTGCTTGCATGCG
CAGGGGCTTGGGCACGGAAATTTGCGGCTCGGCAACGTGTGGATGGACGC
AAAGACACTTACGCTGAAACTTGGTCCTCCATCTTTTGTGAGACTGACGG
AGAGGAATGCGCTGGCTGTCACGTGGGATGACGATGACGATGCAGGCAGG
TGCCTGGATGAGGAAGAAAAGGAGATCGAGGGCTACCGTCCTCCAGAACA
ACAAGCCGACCAGGCGCCTACAGCGGCCGGGGACATATACGCCCTGGCCG
TTTTGTTGTGGACCGTGTGGACAAAAGACAGTTTGGTTCGCCCCGAGTTA
CGCAGTGCTGCCGTGCCTTTGCCAAGGGCCTTCGAAGAGCTGCTCACAGA
GATGTGGGCAGCGGCGCCTGAGGCTCGACCGACGATTGCGGTTGTGCAAC
ACAAATTGACGGCGCTTCAACGCGCCATGTAG

protein sequence of NO03G05400.1

>NO03G05400.1-protein ID=NO03G05400.1-protein|Name=NO03G05400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=800bp
MKTVSAPPRARARNRRRGQRRLCVPYLLPLPLLMFLFLALAPVSAYQSLP
RREQQGVAMGAWFCQFPRSSRANDAYTQQNCRLACDGSGVNKYPRCCVEA
VVGNVCNDEEFKAAQQEGVQCEPETMTDCTTSAPATEPTKSEPPSSVTEV
SASTTASPTTLFSPHPSRAPTRGPTFTPHVVPAQDKDEEKEEVSADIDKS
SKKTHIVVVVGVGGLLLALSCFFICCLSIRRSSRRQQQVRGGGGGGGGGI
NNLQAPPLAVAALYYDEDDNNAAGGSLGVHSPVTYDSNGALIGQPLESHT
SPLPSPSAPPSAPPPVTTFPAVSPLPITVSPPTSPAFDPFGVAAIDYMGV
SGGWPPTPTALSKVRAAAAAAAAETTSSSNLPPPAPVFTQTRRNGARVTA
AGSRLSFTTDGYADLMRLLVSSSSPSSSSSSSSSSSNTLLLHAIDFRLNP
LPYRLQAHEALFRGRFGCSLPPPLPVVAVASSIAQTGSNRIIVVPATGNH
SADENEEEGEEEEQLRHQSSAGVPVIVQTIFTPVPRSAAPALNDELRRWK
ALPANPHLLTLRGVVCRGDKRRLSIVWDAWPKGRTTLRAWLFSPPSSTRG
GRDVPDRLSRRSADTCNNITSNQSGTKPQQQSLEARAALLGLVGRQLIDA
LVCLHAQGLGHGNLRLGNVWMDAKTLTLKLGPPSFVRLTERNALAVTWDD
DDDAGRCLDEEEKEIEGYRPPEQQADQAPTAAGDIYALAVLLWTVWTKDS
LVRPELRSAAVPLPRAFEELLTEMWAAAPEARPTIAVVQHKLTALQRAM*

mRNA from alignment at chr3:1539861..1542442-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO03G05400.1 ID=NO03G05400.1|Name=NO03G05400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2582bp|location=Sequence derived from alignment at chr3:1539861..1542442- (Nannochloropsis oceanica)
CTTGTAAACCGACGTTGAGCCGTTGCACTCATGGTTCCCTCCTCGTTGCC
TAGCTGCCAGCTTAGCTTGGCCACGATTTTGAAAGATAGCACGCCGGCAT
TTCCTCTTCACGTAGCAAAGAGGCTTGCATGGGTTCATTGCCGTCCAATG
CCGCAAGCACTCACAAACAATAGGCTCATGCAATGAAGACGGTCTCCGCA
CCACCACGAGCAAGGGCAAGAAATAGGAGGAGAGGCCAGCGACGACTTTG
TGTCCCATATCTTCTCCCGCTCCCCCTCCTCATGTTCCTATTCCTCGCAC
TAGCCCCCGTCTCCGCCTACCAGTCTCTACCACGTCGTGAGCAGCAAGGG
GTCGCCATGGGTGCCTGGTTTTGCCAATTTCCTCGCTCCAGCCGTGCCAA
CGACGCCTACACTCAGCAAAATTGTCGCTTAGCCTGTGATGGCAGCGGAG
TCAACAAGTACCCCAGATGTTGTGTGGAGGCAGTGGTCGGAAACGTGTGC
AACGACGAGGAATTCAAGGCGGCGCAACAGGAGGGAGTGCAGTGCGAGCC
CGAAACAATGACAGACTGCACGACAAGTGCTCCAGCTACTGAACCAACCA
AATCTGAACCACCTTCATCTGTGACCGAAGTTTCTGCGTCTACGACTGCG
TCACCTACAACCCTTTTTTCGCCACACCCCTCCCGTGCCCCTACTCGTGG
TCCTACCTTCACACCGCACGTCGTCCCCGCACAGGACAAGGACGAGGAAA
AAGAAGAGGTTTCTGCAGACATAGACAAATCTAGCAAGAAAACGCACATT
GTTGTGGTCGTTGGCGTGGGGGGCCTTCTGCTTGCGCTCTCTTGTTTCTT
CATATGCTGCCTGAGCATCAGGCGGTCGAGCAGGCGGCAGCAGCAAGTAC
GAGGAGGAGGGGGAGGGGGAGGGGGGGGCATCAACAACCTACAGGCCCCA
CCACTGGCTGTGGCCGCGTTATACTATGACGAGGATGACAACAACGCTGC
TGGTGGTAGCCTTGGAGTGCACAGCCCCGTCACTTATGATTCGAACGGGG
CCTTGATTGGGCAGCCTTTGGAAAGTCATACATCTCCTTTGCCTTCTCCT
TCCGCCCCTCCTTCAGCGCCCCCACCCGTCACAACGTTTCCTGCAGTATC
TCCTCTTCCTATTACCGTATCACCGCCCACCTCTCCTGCATTCGATCCGT
TTGGCGTCGCGGCGATTGACTACATGGGAGTGTCGGGGGGGTGGCCACCC
ACACCCACGGCCCTCAGTAAGGTAAGGGCAGCAGCAGCAGCAGCAGCGGC
AGAAACAACAAGTAGCTCCAATCTCCCACCACCAGCACCAGTATTTACAC
AAACACGAAGAAATGGAGCTCGGGTGACAGCAGCTGGCTCGCGGTTGTCG
TTCACGACGGACGGATATGCGGACTTGATGCGCTTGCTCGTGTCGTCGTC
GTCCCCCTCCTCCTCCTCCTCCTCCTCGTCGTCCTCCTCCAACACTCTCC
TCCTTCATGCCATCGACTTTCGCCTTAATCCACTCCCCTACCGCCTTCAG
GCCCATGAGGCTCTTTTTCGAGGCCGCTTCGGGTGTTCGCTGCCCCCTCC
CTTGCCAGTGGTAGCAGTAGCAAGCTCAATCGCCCAGACCGGGAGCAATC
GAATCATCGTCGTCCCCGCCACAGGAAATCACAGCGCCGATGAGAATGAA
GAAGAGGGAGAGGAGGAAGAGCAGCTGCGGCACCAGAGCTCGGCGGGAGT
ACCGGTTATCGTGCAGACCATATTTACCCCTGTGCCTCGCAGTGCTGCCC
CTGCCCTCAACGACGAGCTTAGGCGATGGAAGGCCTTACCCGCCAATCCA
CACCTGCTGACGCTGCGGGGTGTGGTCTGCCGAGGAGATAAACGAAGGCT
GTCTATTGTGTGGGATGCCTGGCCCAAGGGAAGGACGACATTGCGTGCAT
GGTTGTTCTCTCCCCCTTCTTCCACCAGAGGTGGGAGGGACGTGCCGGAT
CGACTGAGTAGGCGCTCGGCCGACACATGCAACAACATTACCAGCAATCA
GAGTGGCACGAAGCCACAACAGCAGTCACTGGAAGCGCGAGCTGCATTGC
TGGGTCTAGTGGGGCGACAGCTCATCGATGCCTTGGTGTGCTTGCATGCG
CAGGGGCTTGGGCACGGAAATTTGCGGCTCGGCAACGTGTGGATGGACGC
AAAGACACTTACGCTGAAACTTGGTCCTCCATCTTTTGTGAGACTGACGG
AGAGGAATGCGCTGGCTGTCACGTGGGATGACGATGACGATGCAGGCAGG
TGCCTGGATGAGGAAGAAAAGGAGATCGAGGGCTACCGTCCTCCAGAACA
ACAAGCCGACCAGGCGCCTACAGCGGCCGGGGACATATACGCCCTGGCCG
TTTTGTTGTGGACCGTGTGGACAAAAGACAGTTTGGTTCGCCCCGAGTTA
CGCAGTGCTGCCGTGCCTTTGCCAAGGGCCTTCGAAGAGCTGCTCACAGA
GATGTGGGCAGCGGCGCCTGAGGCTCGACCGACGATTGCGGTTGTGCAAC
ACAAATTGACGGCGCTTCAACGCGCCATGTAG

Coding sequence (CDS) from alignment at chr3:1539861..1542442-

>NO03G05400.1 ID=NO03G05400.1|Name=NO03G05400.1|organism=Nannochloropsis oceanica|type=CDS|length=2400bp|location=Sequence derived from alignment at chr3:1539861..1542442- (Nannochloropsis oceanica)
ATGAAGACGGTCTCCGCACCACCACGAGCAAGGGCAAGAAATAGGAGGAG
AGGCCAGCGACGACTTTGTGTCCCATATCTTCTCCCGCTCCCCCTCCTCA
TGTTCCTATTCCTCGCACTAGCCCCCGTCTCCGCCTACCAGTCTCTACCA
CGTCGTGAGCAGCAAGGGGTCGCCATGGGTGCCTGGTTTTGCCAATTTCC
TCGCTCCAGCCGTGCCAACGACGCCTACACTCAGCAAAATTGTCGCTTAG
CCTGTGATGGCAGCGGAGTCAACAAGTACCCCAGATGTTGTGTGGAGGCA
GTGGTCGGAAACGTGTGCAACGACGAGGAATTCAAGGCGGCGCAACAGGA
GGGAGTGCAGTGCGAGCCCGAAACAATGACAGACTGCACGACAAGTGCTC
CAGCTACTGAACCAACCAAATCTGAACCACCTTCATCTGTGACCGAAGTT
TCTGCGTCTACGACTGCGTCACCTACAACCCTTTTTTCGCCACACCCCTC
CCGTGCCCCTACTCGTGGTCCTACCTTCACACCGCACGTCGTCCCCGCAC
AGGACAAGGACGAGGAAAAAGAAGAGGTTTCTGCAGACATAGACAAATCT
AGCAAGAAAACGCACATTGTTGTGGTCGTTGGCGTGGGGGGCCTTCTGCT
TGCGCTCTCTTGTTTCTTCATATGCTGCCTGAGCATCAGGCGGTCGAGCA
GGCGGCAGCAGCAAGTACGAGGAGGAGGGGGAGGGGGAGGGGGGGGCATC
AACAACCTACAGGCCCCACCACTGGCTGTGGCCGCGTTATACTATGACGA
GGATGACAACAACGCTGCTGGTGGTAGCCTTGGAGTGCACAGCCCCGTCA
CTTATGATTCGAACGGGGCCTTGATTGGGCAGCCTTTGGAAAGTCATACA
TCTCCTTTGCCTTCTCCTTCCGCCCCTCCTTCAGCGCCCCCACCCGTCAC
AACGTTTCCTGCAGTATCTCCTCTTCCTATTACCGTATCACCGCCCACCT
CTCCTGCATTCGATCCGTTTGGCGTCGCGGCGATTGACTACATGGGAGTG
TCGGGGGGGTGGCCACCCACACCCACGGCCCTCAGTAAGGTAAGGGCAGC
AGCAGCAGCAGCAGCGGCAGAAACAACAAGTAGCTCCAATCTCCCACCAC
CAGCACCAGTATTTACACAAACACGAAGAAATGGAGCTCGGGTGACAGCA
GCTGGCTCGCGGTTGTCGTTCACGACGGACGGATATGCGGACTTGATGCG
CTTGCTCGTGTCGTCGTCGTCCCCCTCCTCCTCCTCCTCCTCCTCGTCGT
CCTCCTCCAACACTCTCCTCCTTCATGCCATCGACTTTCGCCTTAATCCA
CTCCCCTACCGCCTTCAGGCCCATGAGGCTCTTTTTCGAGGCCGCTTCGG
GTGTTCGCTGCCCCCTCCCTTGCCAGTGGTAGCAGTAGCAAGCTCAATCG
CCCAGACCGGGAGCAATCGAATCATCGTCGTCCCCGCCACAGGAAATCAC
AGCGCCGATGAGAATGAAGAAGAGGGAGAGGAGGAAGAGCAGCTGCGGCA
CCAGAGCTCGGCGGGAGTACCGGTTATCGTGCAGACCATATTTACCCCTG
TGCCTCGCAGTGCTGCCCCTGCCCTCAACGACGAGCTTAGGCGATGGAAG
GCCTTACCCGCCAATCCACACCTGCTGACGCTGCGGGGTGTGGTCTGCCG
AGGAGATAAACGAAGGCTGTCTATTGTGTGGGATGCCTGGCCCAAGGGAA
GGACGACATTGCGTGCATGGTTGTTCTCTCCCCCTTCTTCCACCAGAGGT
GGGAGGGACGTGCCGGATCGACTGAGTAGGCGCTCGGCCGACACATGCAA
CAACATTACCAGCAATCAGAGTGGCACGAAGCCACAACAGCAGTCACTGG
AAGCGCGAGCTGCATTGCTGGGTCTAGTGGGGCGACAGCTCATCGATGCC
TTGGTGTGCTTGCATGCGCAGGGGCTTGGGCACGGAAATTTGCGGCTCGG
CAACGTGTGGATGGACGCAAAGACACTTACGCTGAAACTTGGTCCTCCAT
CTTTTGTGAGACTGACGGAGAGGAATGCGCTGGCTGTCACGTGGGATGAC
GATGACGATGCAGGCAGGTGCCTGGATGAGGAAGAAAAGGAGATCGAGGG
CTACCGTCCTCCAGAACAACAAGCCGACCAGGCGCCTACAGCGGCCGGGG
ACATATACGCCCTGGCCGTTTTGTTGTGGACCGTGTGGACAAAAGACAGT
TTGGTTCGCCCCGAGTTACGCAGTGCTGCCGTGCCTTTGCCAAGGGCCTT
CGAAGAGCTGCTCACAGAGATGTGGGCAGCGGCGCCTGAGGCTCGACCGA
CGATTGCGGTTGTGCAACACAAATTGACGGCGCTTCAACGCGCCATGTAG

Synonyms

Publications