NO03G05350.1, NO03G05350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05350.1
Unique NameNO03G05350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1119
Alignment locationchr3:1528359..1529477 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1528359..1529477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G05350.1 vs.
Match: EWM29981.1 (hypothetical protein Naga_101042g1 [Nannochloropsis gaditana])

HSP 1 Score: 313.9 bits (803), Expect = 6.600e-82
Identity = 168/254 (66.14%), Postives = 200/254 (78.74%), Query Frame = 0 
Query:    1 MASTTSTSSGGLTSVSAQQPGASVHPSSGGGSSGSPTAHTEEELSRLDEDIIEYLLFRGFTKTIATFEEDRRDDRLKAFDVDRLLVHIDSLVRTYDIQGLLSLWSFLDRRLFSHLDVYHAKEMHKMKIALLRYYVVYAIKSDRRDKAIDFLAKYTL-PASSSFPSSSSSSSPSSHLS-VPHQLQAETDAAWRQWFVLPHLPDPARDPQFHVFFSPSWADTFRVSLRNVLTVIFYSVPAPKLLTLRAYEDGAWHV 253
            M    S  +   T  S+  P   V   S  GSS +    T+E+L R DEDIIEYLLFRGFTK++A FE DRR+DRLKAFDVD+LL HI+ LVR+YDIQGLL LW FLDRRLFSHLDV+HA+E++KMK++LLRYYVVYAI+S+RRDKAI+FLA YTL  ASSS  S+S +SSPSS  +  P Q+  ETDAAWRQWFVLPHLP+P+RDPQFHVFFS SWAD FRVS RNVLTVIFYS+P PKLL++ AY++G W +
Sbjct:    1 MTGIPSAITINTTGNSSSLPHVGVPHLSHAGSSNANLL-TDEQLFRTDEDIIEYLLFRGFTKSMAVFEVDRREDRLKAFDVDKLLAHINGLVRSYDIQGLLRLWEFLDRRLFSHLDVHHARELYKMKVSLLRYYVVYAIQSNRRDKAIEFLANYTLQSASSSSSSTSPASSPSSSTTPFPPQILTETDAAWRQWFVLPHLPEPSRDPQFHVFFSSSWADAFRVSFRNVLTVIFYSLPVPKLLSMPAYDEGGWQI 253
The following BLAST results are available for this feature:
BLAST of NO03G05350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29981.16.600e-8266.14hypothetical protein Naga_101042g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05350NO03G05350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05350.1NO03G05350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05350.1.cds1NO03G05350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05350.1 ID=NO03G05350.1|Name=NO03G05350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp
ATGGCAAGCACGACAAGCACGAGTAGCGGCGGTCTCACCAGCGTCAGTGC
GCAGCAACCCGGTGCTTCAGTGCATCCCAGCAGCGGCGGTGGCAGCAGCG
GCAGCCCCACGGCGCATACGGAGGAGGAGCTCTCTCGCCTTGATGAGGAC
ATCATTGAGTACTTACTATTTAGGGGCTTCACTAAGACCATTGCCACGTT
TGAGGAGGACAGAAGGGACGACAGGCTCAAGGCTTTCGATGTGGATCGAT
TATTGGTTCACATTGACTCGCTTGTCCGGACCTATGACATTCAGGGTTTG
TTAAGCCTGTGGAGTTTCCTGGACAGGCGATTGTTTAGTCATTTGGACGT
GTACCACGCAAAGGAGATGCACAAAATGAAGATCGCCCTTCTGCGGTACT
ACGTCGTGTACGCCATCAAATCCGACCGTCGGGACAAGGCAATCGATTTC
CTCGCCAAGTACACCCTCCCAGCATCCTCCTCATTCCCTTCCTCCTCCTC
TTCCTCTTCCCCTTCTTCGCACCTTTCCGTTCCTCACCAGCTCCAAGCCG
AAACTGACGCGGCCTGGCGACAGTGGTTCGTTCTCCCCCATCTTCCCGAC
CCCGCCCGAGACCCGCAATTTCATGTCTTCTTCTCCCCTTCGTGGGCTGA
TACTTTTCGCGTGTCGTTAAGAAACGTCTTGACCGTTATTTTTTACTCAG
TCCCGGCGCCAAAGCTACTGACATTGAGGGCATATGAGGACGGGGCATGG
CATGTGAAGAGTGAGCTCATGAGGGCGAGACAGGCGGTCGCGGAAAGGGA
TAAAGTGATGGTTACCTGGCAGGGAGCCATGATGAAATTGGCCAAGACGG
TAGGGAATTCGATAGGGGCAATGCAGAGATGGAAGGAAGAAGAGAGGCAT
CAGCAGCACTTGCGGCAGCTGCAGCTGGAGCTGGGGGCGGCGGGAGGAGG
GAGGCAGGGAAGCAGGTCAGGGAAGAAGGAGAAGACTTTATTTGCTGAGG
AGGAGGAGGAGGAAATAGGGGAGGGGGGAGCGAAGAAGGGGATGCGGATG
AAGGCCAGCAACAGCAGCATCGATGGAAGGAGGCGGAGTCGGCAGCGTTG
CAGGCGGTGCTGGACGTGA
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protein sequence of NO03G05350.1

>NO03G05350.1-protein ID=NO03G05350.1-protein|Name=NO03G05350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MASTTSTSSGGLTSVSAQQPGASVHPSSGGGSSGSPTAHTEEELSRLDED
IIEYLLFRGFTKTIATFEEDRRDDRLKAFDVDRLLVHIDSLVRTYDIQGL
LSLWSFLDRRLFSHLDVYHAKEMHKMKIALLRYYVVYAIKSDRRDKAIDF
LAKYTLPASSSFPSSSSSSSPSSHLSVPHQLQAETDAAWRQWFVLPHLPD
PARDPQFHVFFSPSWADTFRVSLRNVLTVIFYSVPAPKLLTLRAYEDGAW
HVKSELMRARQAVAERDKVMVTWQGAMMKLAKTVGNSIGAMQRWKEEERH
QQHLRQLQLELGAAGGGRQGSRSGKKEKTLFAEEEEEEIGEGGAKKGMRM
KASNSSIDGRRRSRQRCRRCWT*
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mRNA from alignment at chr3:1528359..1529477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05350.1 ID=NO03G05350.1|Name=NO03G05350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp|location=Sequence derived from alignment at chr3:1528359..1529477- (Nannochloropsis oceanica)
ATGGCAAGCACGACAAGCACGAGTAGCGGCGGTCTCACCAGCGTCAGTGC
GCAGCAACCCGGTGCTTCAGTGCATCCCAGCAGCGGCGGTGGCAGCAGCG
GCAGCCCCACGGCGCATACGGAGGAGGAGCTCTCTCGCCTTGATGAGGAC
ATCATTGAGTACTTACTATTTAGGGGCTTCACTAAGACCATTGCCACGTT
TGAGGAGGACAGAAGGGACGACAGGCTCAAGGCTTTCGATGTGGATCGAT
TATTGGTTCACATTGACTCGCTTGTCCGGACCTATGACATTCAGGGTTTG
TTAAGCCTGTGGAGTTTCCTGGACAGGCGATTGTTTAGTCATTTGGACGT
GTACCACGCAAAGGAGATGCACAAAATGAAGATCGCCCTTCTGCGGTACT
ACGTCGTGTACGCCATCAAATCCGACCGTCGGGACAAGGCAATCGATTTC
CTCGCCAAGTACACCCTCCCAGCATCCTCCTCATTCCCTTCCTCCTCCTC
TTCCTCTTCCCCTTCTTCGCACCTTTCCGTTCCTCACCAGCTCCAAGCCG
AAACTGACGCGGCCTGGCGACAGTGGTTCGTTCTCCCCCATCTTCCCGAC
CCCGCCCGAGACCCGCAATTTCATGTCTTCTTCTCCCCTTCGTGGGCTGA
TACTTTTCGCGTGTCGTTAAGAAACGTCTTGACCGTTATTTTTTACTCAG
TCCCGGCGCCAAAGCTACTGACATTGAGGGCATATGAGGACGGGGCATGG
CATGTGAAGAGTGAGCTCATGAGGGCGAGACAGGCGGTCGCGGAAAGGGA
TAAAGTGATGGTTACCTGGCAGGGAGCCATGATGAAATTGGCCAAGACGG
TAGGGAATTCGATAGGGGCAATGCAGAGATGGAAGGAAGAAGAGAGGCAT
CAGCAGCACTTGCGGCAGCTGCAGCTGGAGCTGGGGGCGGCGGGAGGAGG
GAGGCAGGGAAGCAGGTCAGGGAAGAAGGAGAAGACTTTATTTGCTGAGG
AGGAGGAGGAGGAAATAGGGGAGGGGGGAGCGAAGAAGGGGATGCGGATG
AAGGCCAGCAACAGCAGCATCGATGGAAGGAGGCGGAGTCGGCAGCGTTG
CAGGCGGTGCTGGACGTGA
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Coding sequence (CDS) from alignment at chr3:1528359..1529477-

>NO03G05350.1 ID=NO03G05350.1|Name=NO03G05350.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr3:1528359..1529477- (Nannochloropsis oceanica)
ATGGCAAGCACGACAAGCACGAGTAGCGGCGGTCTCACCAGCGTCAGTGC
GCAGCAACCCGGTGCTTCAGTGCATCCCAGCAGCGGCGGTGGCAGCAGCG
GCAGCCCCACGGCGCATACGGAGGAGGAGCTCTCTCGCCTTGATGAGGAC
ATCATTGAGTACTTACTATTTAGGGGCTTCACTAAGACCATTGCCACGTT
TGAGGAGGACAGAAGGGACGACAGGCTCAAGGCTTTCGATGTGGATCGAT
TATTGGTTCACATTGACTCGCTTGTCCGGACCTATGACATTCAGGGTTTG
TTAAGCCTGTGGAGTTTCCTGGACAGGCGATTGTTTAGTCATTTGGACGT
GTACCACGCAAAGGAGATGCACAAAATGAAGATCGCCCTTCTGCGGTACT
ACGTCGTGTACGCCATCAAATCCGACCGTCGGGACAAGGCAATCGATTTC
CTCGCCAAGTACACCCTCCCAGCATCCTCCTCATTCCCTTCCTCCTCCTC
TTCCTCTTCCCCTTCTTCGCACCTTTCCGTTCCTCACCAGCTCCAAGCCG
AAACTGACGCGGCCTGGCGACAGTGGTTCGTTCTCCCCCATCTTCCCGAC
CCCGCCCGAGACCCGCAATTTCATGTCTTCTTCTCCCCTTCGTGGGCTGA
TACTTTTCGCGTGTCGTTAAGAAACGTCTTGACCGTTATTTTTTACTCAG
TCCCGGCGCCAAAGCTACTGACATTGAGGGCATATGAGGACGGGGCATGG
CATGTGAAGAGTGAGCTCATGAGGGCGAGACAGGCGGTCGCGGAAAGGGA
TAAAGTGATGGTTACCTGGCAGGGAGCCATGATGAAATTGGCCAAGACGG
TAGGGAATTCGATAGGGGCAATGCAGAGATGGAAGGAAGAAGAGAGGCAT
CAGCAGCACTTGCGGCAGCTGCAGCTGGAGCTGGGGGCGGCGGGAGGAGG
GAGGCAGGGAAGCAGGTCAGGGAAGAAGGAGAAGACTTTATTTGCTGAGG
AGGAGGAGGAGGAAATAGGGGAGGGGGGAGCGAAGAAGGGGATGCGGATG
AAGGCCAGCAACAGCAGCATCGATGGAAGGAGGCGGAGTCGGCAGCGTTG
CAGGCGGTGCTGGACGTGA
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Synonyms
Publications