NO03G05340.2, NO03G05340.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05340.2
Unique NameNO03G05340.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2585
Alignment locationchr3:1524814..1528074 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1524814..1528074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G05340.2 vs.
Match: EWM29977.1 (beta- -endoglucanase [Nannochloropsis gaditana])

HSP 1 Score: 653.7 bits (1685), Expect = 4.400e-184
Identity = 306/394 (77.66%), Postives = 347/394 (88.07%), Query Frame = 0 
Query:   52 SALFLVGLIALTVVSPIHAALTPDTKLTPPAPLAGEPLNYGEILYLSSIFYEAQRSGALPSTNRVPWRGDSALTDGADRKVDLSGGWYDAGDHLKFAFTTAFTATTLAWSLLEFPDAYDSVNERSVMMDTIKWGLDWLLKAHHKPDALIYQVASFDDHSYWGPPETFPSTMKRPSFELNPEHPGSDIAGEVAAAFAAASLVFAESDSVYSKTLLLHARQLFDFADTHRGIGSKDFYGSTGYKDELAWAAAWLFKATGEANYLQKAEVMFDACCGGRAGTTKTDYDWGDKGAGVQLLLFHITNSQKYKVGITEYLQTWLKKPKTPKGLTFYSPWGSNRYTANTAFIALMAASYGLGPEGLYVRWAQKEIDYILTAGGKVNQKSGRPEYSYVIGFG 446
            S LF+    +++V S      + +T+L+PP  +A EPLNYGE+LYLSS+FYEAQR+GALPS+NR+PWRGDSAL DG+D+ +DLSGGWYDAGDHLKFA TT FT +TLAWSLLEFPDAYDSVNERSVMMDTIKWGLDWLLKAH+KPDAL+YQ+ASFDDHSYWGPPE FP  MKRPSFE+NP+HPGSDIAGEV+AAFAAASLVFAESDSVYS TLL+HARQLFDFAD HRGIGSKDFYGSTGY DELAWAA WLFKATGEA+YL KAE  FDACCGG+ GTTK DYDWG+KG GVQL+L+H+T ++KY+ GIT YLQTWLKKPKTPKGLTF+SPWGSNRYTANTAFIALMAA+YGL P   Y  WA+ EI YILTAGGKVN  +G+P+YSY+IGFG
Sbjct:    6 SLLFVALATSVSVTSS-----SSNTRLSPPKAIADEPLNYGEVLYLSSLFYEAQRAGALPSSNRIPWRGDSALKDGSDKGLDLSGGWYDAGDHLKFALTTGFTVSTLAWSLLEFPDAYDSVNERSVMMDTIKWGLDWLLKAHYKPDALVYQIASFDDHSYWGPPEAFPKKMKRPSFEINPKHPGSDIAGEVSAAFAAASLVFAESDSVYSHTLLVHARQLFDFADKHRGIGSKDFYGSTGYLDELAWAAVWLFKATGEADYLHKAEKFFDACCGGKDGTTKVDYDWGEKGPGVQLMLYHLTQAEKYRQGITNYLQTWLKKPKTPKGLTFFSPWGSNRYTANTAFIALMAATYGLNP-SKYSAWAESEITYILTAGGKVNPDTGKPKYSYLIGFG 393
The following BLAST results are available for this feature:
BLAST of NO03G05340.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29977.14.400e-18477.66beta- -endoglucanase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05340NO03G05340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05340.2NO03G05340.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05340.2.cds1NO03G05340.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05340.2.cds2NO03G05340.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05340.2.cds3NO03G05340.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05340.2 ID=NO03G05340.2|Name=NO03G05340.2|organism=Nannochloropsis oceanica|type=mRNA|length=2585bp
CGACACTTGGTGTTCCACGGACCCTCTGCAAGCTTTATATTCTCCTGAAA
TCTCATCTTGAGAAACTTTTTTAATGTCTTGCTACGTGTTTAACTCTATC
TCGCCCATGCCTCTGCCTCGCTGCACGTTAACCAGGCCTCGCCAAAGACC
AAGGCTTCGACACGATTCTGTCACCAAGACTCACTCCCCCGCTTCCCGTT
ATTTGTTCCATAGCCTCGCATTTCTTGGATCAGGCTACTCCTGAGACCTG
GCCTGCCTGGGTAGATGCTATATGCAATGCACAAACATCTCGCGCAAATT
AAATACTCACCACACAAAATCTCTCCCTTTCTACAGACACGGCGTGTGGT
ATACGTGCAGTCCTCCTGGAGTGTCCCCTCCAGCAAGCATCCATCCACAA
TGCGGGCCACCGTTTCTTCCGCCCTATTCCTGGTGGGTCTCATTGCCTTG
ACTGTGGTCAGTCCCATCCATGCAGCACTCACACCCGACACCAAGCTCAC
TCCCCCTGCACCTCTTGCTGGCGAACCGCTGAACTACGGCGAGATCCTCT
ACCTTTCCTCGATCTTCTACGAAGCTCAACGCTCGGGCGCCCTGCCTAGC
ACCAACCGCGTGCCCTGGCGTGGCGACTCGGCCCTAACAGATGGAGCGGA
CAGGAAAGTGGACTTGAGCGGCGGCTGGTACGACGCAGGTGACCACTTGA
AGTTCGCATTTACCACGGCATTCACCGCAACTACCCTGGCATGGTCCTTG
TTGGAGTTTCCTGATGCCTATGACTCTGTGAATGAACGGTCCGTGATGAT
GGATACTATCAAATGGGGCCTCGACTGGCTCCTCAAAGCCCACCACAAGC
CCGATGCCCTCATCTACCAAGTTGCCTCCTTCGACGACCATTCATACTGG
GGGCCTCCGGAGACGTTTCCCTCCACTATGAAACGCCCTTCTTTTGAACT
AAATCCTGAGCACCCCGGCTCGGATATCGCGGGGGAGGTCGCTGCTGCCT
TTGCAGCGGCTTCATTAGTCTTTGCCGAGTCGGACTCGGTGTACTCCAAG
ACATTGTTACTCCATGCCCGGCAGCTGTTTGATTTTGCGGACACGCATCG
GGGTATTGGGAGCAAGGATTTTTACGGGTCCACTGGCTACAAGGACGAGT
TGGCGTGGGCTGCGGCATGGCTGTTCAAGGCGACAGGAGAGGCGAATTAC
CTCCAGAAAGCCGAGGTGATGTTTGATGCTTGCTGTGGTGGGCGCGCGGG
CACGACCAAGACGGACTACGACTGGGGGGATAAGGGAGCTGGGGTGCAGC
TACTCCTCTTCCACATCACCAATTCTCAGAAATACAAGGTAGGAATCACG
GAGTACCTCCAGACGTGGCTTAAGAAGCCCAAAACCCCCAAGGGCCTGAC
CTTCTACTCGCCGTGGGGGAGCAACCGATACACGGCCAACACGGCGTTTA
TTGCCTTAATGGCCGCTTCGTACGGTCTCGGCCCCGAGGGTTTGTACGTC
AGGTGGGCACAGAAGGAGATCGATTACATTTTGACGGCGGGCGGGAAGGT
AAATCAGAAGAGTGGGCGCCCGGAGTACTCGTATGTGATTGGTTTTGGGT
ACGTCCTGGGAGGAGCGAGGGAGGGAGGGACGGAGGGACAGAGGTACAGG
TCTTCACCTAGAAATTAGGTTACCTACCCACACGTTTCTCACCCTTTCTC
CTCTTCTTCCTTCATCCCGGACACTAGCGAGGACTTTCCCCGCGCGCCCC
ACCATCGTTCCTCGTCCTGTGACGGGGGCCACTGTGAATGTTCGACGAAA
CCACATCCCCATATGTTGTACGGCGCTTTGGTGGGTGGCCCTGGGGAGAA
GGACGACTTCGTGGATGACTGCTCCGATTATCAGAAGAATGTACTCGCTC
TGGACTACAATGCGGCCTTCACGGGGGCGTGTGCGGCGTTGCGGCACCGT
TATCTCACAGGGCAGATGCCCGCCTGATGAGAATGTTGAGAAGGAGGAGG
AGAAGAAATCAGGGAAGAGAAAATCGCGGAAAAGAGATGAGGAGGAGGTG
AAGGAGGAAATGCAAAGAAACGTTTGTAGGTGGAAAAATGAAGAAAGAGC
CCATGGAGGAGGAGAAGGATAAATAAATGAAGGCTGTAAAATTTAAAAAG
TGCGAGAATAAGAGTACGGCACTGTATGTATCTATCAAGGTGGATCTCCA
CGGCTTACGTGTATGGCTACGTGTGCATGTGCGTCTTTGTGACACACTGT
GAAGGAGCGTGGGAGAGTAGCAAGATTGAGAGCATTGGCCGACAGTCGAT
GACGGAAGGGAGGGTCTCCTTCTCCGCAATGCCAAAAGAGGAAGGGAGGG
AGGGAGTCAGTGGTGCCCTTATCTTTTCTCCCCCTCCGCTTCCATGCATG
AGTGCACTTTTCGAATTAATTTGTTCATTTATTCACCAATTTATTCAAAT
GAGAGAGCAAGCTTCACAGTGGGTCTGTGGAGGCGCATACATCAACAACA
ATGCCGAATGATGGTCAGAGCTTGATCCAAAAGGAACGGCAGAAAGGGAA
AAAAACTGATAAATTTGCTATAAAAAGAATCTCAG
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protein sequence of NO03G05340.2

>NO03G05340.2-protein ID=NO03G05340.2-protein|Name=NO03G05340.2|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MLYAMHKHLAQIKYSPHKISPFLQTRRVVYVQSSWSVPSSKHPSTMRATV
SSALFLVGLIALTVVSPIHAALTPDTKLTPPAPLAGEPLNYGEILYLSSI
FYEAQRSGALPSTNRVPWRGDSALTDGADRKVDLSGGWYDAGDHLKFAFT
TAFTATTLAWSLLEFPDAYDSVNERSVMMDTIKWGLDWLLKAHHKPDALI
YQVASFDDHSYWGPPETFPSTMKRPSFELNPEHPGSDIAGEVAAAFAAAS
LVFAESDSVYSKTLLLHARQLFDFADTHRGIGSKDFYGSTGYKDELAWAA
AWLFKATGEANYLQKAEVMFDACCGGRAGTTKTDYDWGDKGAGVQLLLFH
ITNSQKYKVGITEYLQTWLKKPKTPKGLTFYSPWGSNRYTANTAFIALMA
ASYGLGPEGLYVRWAQKEIDYILTAGGKVNQKSGRPEYSYVIGFGYVLGG
AREGGTEGQRYRSSPRN*
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mRNA from alignment at chr3:1524814..1528074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05340.2 ID=NO03G05340.2|Name=NO03G05340.2|organism=Nannochloropsis oceanica|type=mRNA|length=3261bp|location=Sequence derived from alignment at chr3:1524814..1528074+ (Nannochloropsis oceanica)
CGACACTTGGTGTTCCACGGACCCTCTGCAAGCTTTATATTCTCCTGAAA
TCTCATCTTGAGAAACTTTTTTAATGTCTTGCTACGTGTTTAACTCTATC
TCGCCCATGCCTCTGCCTCGCTGCACGTTAACCAGGCCTCGCCAAAGACC
AAGGCTTCGACACGATTCTGTCACCAAGACTCACTCCCCCGCTTCCCGTT
ATTTGTTCCATAGCCTCGCATTTCTTGGATCAGGCTACTCCTGAGACCTG
GCCTGCCTGGGTAGATGCTATATGCAATGCACAAACATCTCGCGCAAATT
AAATACTCACCACACAAAATCTCTCCCTTTCTACAGACACGGCGTGTGGT
ATACGTGCAGTCCTCCTGGAGTGTCCCCTCCAGCAAGCATCCATCCACAA
TGCGGGCCACCGTTTCTTCCGCCCTATTCCTGGTGGGTCTCATTGCCTTG
ACTGTGGTCAGTCCCATCCATGCAGCACTCACACCCGACACCAAGCTCAC
TCCCCCTGCACCTCTTGCTGGCGAACGTAAGTGGCTAGCTAGTTTAGGGG
AACGAGTGACACCGCCATGACAGGCTTCAGGTGGAAGTGCTGAGGAGAAG
GAAGAAAATGAACGAGGACACATGGTCACCTTGCAAATAATACAACAAAC
ACATACATTCTCTCCCATAGTACTCCGCGTGCCTACATCCTCTCACTCCT
CCTAATCCCTCCTTTTCCCCTCCCTCCTCCTCCCCAGCGCTGAACTACGG
CGAGATCCTCTACCTTTCCTCGATCTTCTACGAAGCTCAACGCTCGGGCG
CCCTGCCTAGCACCAACCGCGTGCCCTGGCGTGGCGACTCGGCCCTAACA
GATGGAGCGGACAGGAAAGTGGACTTGAGCGGCGGCTGGTACGACGCAGG
TGACCACTTGAAGTTCGCATTTACCACGGCATTCACCGCAACTACCCTGG
CATGGTCCTTGTTGGAGTTTCCTGATGCCTATGACTCTGTGAATGGTATG
TTGGGGAGGGAGGCGGGAGCGGTAATGTCAATGCGACAGATTTGTTTGAT
TACTTGGTTTAGCCCACGGCTTGTGTCTTACCCTCCCCCTTCATCCTCAC
ATCCTTTCTCTCCACTCCAGAACGGTCCGTGATGATGGATACTATCAAAT
GGGGCCTCGACTGGCTCCTCAAAGCCCACCACAAGCCCGATGCCCTCATC
TACCAAGTTGCCTCCTTCGACGACCATTCATACTGGGGGCCTCCGGAGAC
GTTTCCCTCCACTATGAAACGCCCTTCTTTTGAACTAAATCCTGAGCACC
CCGGCTCGGATATCGCGGGGGAGGTCGCTGCTGCCTTTGCAGCGGCTTCA
TTAGTCTTTGCCGAGTCGGACTCGGTGTACTCCAAGACATTGTTACTCCA
TGCCCGGCAGCTGTTTGATTTTGCGGACACGCATCGGGGTATTGGGAGCA
AGGATTTTTACGGGTCCACTGGCTACAAGGACGAGTTGGCGTGGGCTGCG
GCATGGCTGTTCAAGGCGACAGGAGAGGCGAATTACCTCCAGAAAGCCGA
GGTGATGTTTGATGCTTGCTGTGGTGGGCGCGCGGGCACGACCAAGACGG
ACTACGACTGGGGGGATAAGGGAGCTGGGGTGCAGCTACTCCTCTTCCAC
ATCACCAATTCTCAGAAATACAAGGTAGGAATCACGGAGTACCTCCAGAC
GTGGCTTAAGAAGCCCAAAACCCCCAAGGGCCTGACCTTCTACTCGCCGT
GGGGGAGCAACCGATACACGGCCAACACGGCGTTTATTGCCTTAATGGCC
GCTTCGTACGGTCTCGGCCCCGAGGGTTTGTACGTCAGGTGGGCACAGAA
GGAGATCGATTACATTTTGACGGCGGGCGGGAAGGTAAATCAGAAGAGTG
GGCGCCCGGAGTACTCGTATGTGATTGGTTTTGGGTACGTCCTGGGAGGA
GCGAGGGAGGGAGGGACGGAGGGACAGAGGTACAGGTCTTCACCTAGAAA
TTAGGTTACCTACCCACACGTTTCTCACCCTTTCTCCTCTTCTTCCTTCA
TCCCGGACACTAGCGAGGACTTTCCCCGCGCGCCCCACCATCGTTCCTCG
TCCTGTGACGGGGGCCACTGTGAATGTTCGACGAAACCACATCCCCATAT
GTTGTACGGCGCTTTGGTGGGTGGCCCTGGGGAGAAGGACGACTTCGTGG
ATGACTGCTCCGATTATCAGAAGAATGTACGTCGTGAGGAAGGGGAGGGG
GAGCAAGAAAAAGAGGGGGCAGAGATCGAGGAGGAAGGGAGAATGGAGTG
CTGACTTGCTGACTTGTCCTTTTCTCCTTTTTTTCCCTTTCCACATACGA
ACACTCACAGGAAGGTAAAGATGGTGGCAGAAAGCGAGGAAAAATGGCGG
CAGGACTGAATCGCAGGGAGGGGAGAAGGGGGGGAAGGGGAGGGAATAAA
TGAACGGAGGGAAATCAGGTTTTCCTCTGAGTCTGTGTGCCCCTATGAAG
TAACTCGATGGTAGATCTCTACTACCATTGCGGGAATCATTAACCCTCTT
CCTCTCTTATTTCCCCACAGTCGCTCTGGACTACAATGCGGCCTTCACGG
GGGCGTGTGCGGCGTTGCGGCACCGTTATCTCACAGGGCAGATGCCCGCC
TGATGAGAATGTTGAGAAGGAGGAGGAGAAGAAATCAGGGAAGAGAAAAT
CGCGGAAAAGAGATGAGGAGGAGGTGAAGGAGGAAATGCAAAGAAACGTT
TGTAGGTGGAAAAATGAAGAAAGAGCCCATGGAGGAGGAGAAGGATAAAT
AAATGAAGGCTGTAAAATTTAAAAAGTGCGAGAATAAGAGTACGGCACTG
TATGTATCTATCAAGGTGGATCTCCACGGCTTACGTGTATGGCTACGTGT
GCATGTGCGTCTTTGTGACACACTGTGAAGGAGCGTGGGAGAGTAGCAAG
ATTGAGAGCATTGGCCGACAGTCGATGACGGAAGGGAGGGTCTCCTTCTC
CGCAATGCCAAAAGAGGAAGGGAGGGAGGGAGTCAGTGGTGCCCTTATCT
TTTCTCCCCCTCCGCTTCCATGCATGAGTGCACTTTTCGAATTAATTTGT
TCATTTATTCACCAATTTATTCAAATGAGAGAGCAAGCTTCACAGTGGGT
CTGTGGAGGCGCATACATCAACAACAATGCCGAATGATGGTCAGAGCTTG
ATCCAAAAGGAACGGCAGAAAGGGAAAAAAACTGATAAATTTGCTATAAA
AAGAATCTCAG
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Coding sequence (CDS) from alignment at chr3:1524814..1528074+

>NO03G05340.2 ID=NO03G05340.2|Name=NO03G05340.2|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr3:1524814..1528074+ (Nannochloropsis oceanica)
ATGCTATATGCAATGCACAAACATCTCGCGCAAATTAAATACTCACCACA
CAAAATCTCTCCCTTTCTACAGACACGGCGTGTGGTATACGTGCAGTCCT
CCTGGAGTGTCCCCTCCAGCAAGCATCCATCCACAATGCGGGCCACCGTT
TCTTCCGCCCTATTCCTGGTGGGTCTCATTGCCTTGACTGTGGTCAGTCC
CATCCATGCAGCACTCACACCCGACACCAAGCTCACTCCCCCTGCACCTC
TTGCTGGCGAACCGCTGAACTACGGCGAGATCCTCTACCTTTCCTCGATC
TTCTACGAAGCTCAACGCTCGGGCGCCCTGCCTAGCACCAACCGCGTGCC
CTGGCGTGGCGACTCGGCCCTAACAGATGGAGCGGACAGGAAAGTGGACT
TGAGCGGCGGCTGGTACGACGCAGGTGACCACTTGAAGTTCGCATTTACC
ACGGCATTCACCGCAACTACCCTGGCATGGTCCTTGTTGGAGTTTCCTGA
TGCCTATGACTCTGTGAATGAACGGTCCGTGATGATGGATACTATCAAAT
GGGGCCTCGACTGGCTCCTCAAAGCCCACCACAAGCCCGATGCCCTCATC
TACCAAGTTGCCTCCTTCGACGACCATTCATACTGGGGGCCTCCGGAGAC
GTTTCCCTCCACTATGAAACGCCCTTCTTTTGAACTAAATCCTGAGCACC
CCGGCTCGGATATCGCGGGGGAGGTCGCTGCTGCCTTTGCAGCGGCTTCA
TTAGTCTTTGCCGAGTCGGACTCGGTGTACTCCAAGACATTGTTACTCCA
TGCCCGGCAGCTGTTTGATTTTGCGGACACGCATCGGGGTATTGGGAGCA
AGGATTTTTACGGGTCCACTGGCTACAAGGACGAGTTGGCGTGGGCTGCG
GCATGGCTGTTCAAGGCGACAGGAGAGGCGAATTACCTCCAGAAAGCCGA
GGTGATGTTTGATGCTTGCTGTGGTGGGCGCGCGGGCACGACCAAGACGG
ACTACGACTGGGGGGATAAGGGAGCTGGGGTGCAGCTACTCCTCTTCCAC
ATCACCAATTCTCAGAAATACAAGGTAGGAATCACGGAGTACCTCCAGAC
GTGGCTTAAGAAGCCCAAAACCCCCAAGGGCCTGACCTTCTACTCGCCGT
GGGGGAGCAACCGATACACGGCCAACACGGCGTTTATTGCCTTAATGGCC
GCTTCGTACGGTCTCGGCCCCGAGGGTTTGTACGTCAGGTGGGCACAGAA
GGAGATCGATTACATTTTGACGGCGGGCGGGAAGGTAAATCAGAAGAGTG
GGCGCCCGGAGTACTCGTATGTGATTGGTTTTGGGTACGTCCTGGGAGGA
GCGAGGGAGGGAGGGACGGAGGGACAGAGGTACAGGTCTTCACCTAGAAA
TTAG
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Synonyms
Publications