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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1503984..1505387 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05270.1 vs.
Match: EWM29965.1 (protein kinase domain protein [Nannochloropsis gaditana]) HSP 1 Score: 419.5 bits (1077), Expect = 1.400e-113 Identity = 210/288 (72.92%), Postives = 235/288 (81.60%), Query Frame = 0
Query: 5 SSAPDLENVDGRHFDVQRTLGEGGFGKVNAVVKKTEPDVGKWYAMKALVKEVIVHKQMQEEVLRELALLREVGSSHFVASAYYAFQDFSHLYLVLDLYLGGDLRFHLSKAPERHLSAAQVTFYGASLVLALDFLHTRGVLHRDIKPENVLMDDKGQIALTDLGISAKIDDTSTRTALICTHTSGTPGYMGPELFWATHRHGIPSEGFSLGVLLYELSTGARPYAHDMFNKLDHHGEEAAYYKDAAAATEKMPLFKSVPAISAPPEMQALIRQLLRVHPEQRGVNESQG 293
SSA D NVD RHFD+QRTLGEGGFGKVNAV+KK+ PD GKWYAMKALVKEVIV K+M EEV+REL+LL E+G SHFV +A+YAFQD ++LYLVLDLYLGGDLR+HL KA R LSAAQV FYGASL+LALDFLH+RGVLHRDIKPENVLMDD G IALTDLG+SAK+ STR LICT TSGTPGYM PE+FW TH+HGIPSE FSLGVLLYEL TG+RP+ HD+F KL HHGEEAAYYK+A A + LF S E QALIRQLLR+HPE RG + G
Sbjct: 20 SSALDPGNVDSRHFDIQRTLGEGGFGKVNAVIKKSGPDSGKWYAMKALVKEVIVRKKMHEEVMRELSLLCELGGSHFVCNAHYAFQDSANLYLVLDLYLGGDLRYHLEKASPRQLSAAQVCFYGASLLLALDFLHSRGVLHRDIKPENVLMDDTGYIALTDLGVSAKVAGASTREKLICTTTSGTPGYMAPEIFWETHQHGIPSEAFSLGVLLYELCTGSRPFPHDLFEKLYHHGEEAAYYKNATTAAGQHSLFTSHTGKGTSKEAQALIRQLLRMHPEHRGSRKEGG 307
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05270.1 ID=NO03G05270.1|Name=NO03G05270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp ATGGCGGGTGGGTCAAGTGCCCCTGATTTGGAAAATGTAGATGGGCGGCA TTTCGACGTGCAGCGAACCTTAGGGGAAGGGGGCTTCGGCAAGGTCAATG CGGTGGTCAAAAAGACGGAACCAGATGTGGGCAAGTGGTACGCCATGAAA GCGTTGGTCAAGGAGGTGATTGTCCACAAACAAATGCAAGAGGAAGTCCT GCGCGAATTGGCCCTGCTCCGCGAGGTTGGAAGCAGTCACTTTGTTGCCT CAGCCTACTACGCTTTTCAAGACTTTTCCCATCTTTATCTAGTCCTTGAC TTATATTTGGGCGGCGATTTGCGTTTTCATTTGTCCAAGGCCCCCGAGCG CCATTTGTCAGCGGCCCAAGTCACGTTTTACGGAGCCTCCCTCGTACTAG CCCTGGACTTTTTGCATACCCGAGGCGTCTTGCATCGTGACATCAAGCCC GAGAATGTTCTTATGGACGACAAGGGCCAGATTGCACTGACTGACTTAGG CATCTCAGCCAAAATTGACGATACCTCGACACGGACAGCCCTGATCTGCA CACACACCAGCGGCACGCCGGGGTACATGGGACCCGAGCTCTTTTGGGCA ACCCATCGGCATGGTATCCCTTCCGAAGGATTTTCTTTGGGTGTGTTGCT ATATGAACTCAGTACGGGGGCTCGGCCATACGCACATGATATGTTTAACA AGCTGGACCACCACGGCGAGGAGGCCGCGTACTATAAGGACGCCGCCGCT GCGACTGAGAAGATGCCCCTTTTCAAAAGCGTTCCGGCGATCAGCGCGCC ACCAGAAATGCAGGCCCTTATCCGCCAGTTGCTTCGAGTTCATCCAGAGC AGCGTGGTGTGAACGAAAGCCAAGGCCTGACTTCGCTCAAAACCAGTCCG GCCTTCGCGGGTCTGGACTGGGAGGCCCTCAGCGCCAAGACGCTTGCTCC TCCCTTTGTGCCCAAGAAGGAGGCCAATGTTCAGGCAAACATGAATGATC TCTTTGATGAAGAGGATGATGGAGCCGTGACAGTAGTCAAAAAGAAAAAG AAGAATGATAAAGTCGTCGCGGGCCTCCTGACCCCCGAGCAGCAGGCAGC CTTCGCGTCATATAGCTACAATCACCGCAAGATCACAGGCAATACCGGAA TCGAGAACAATGAAAAGAGGTCAAATATCCGCAACTCCATTGTCAACATA ATTTCCTTCCCAAAGAGCTTGCACCAGAGTTTCGAAAGCCTAGCGGGCAG AAGATCTTCGTCGTCCAACATGTCCATCGGAGGAAAGGCTAATGACCCCG TAGGTATTTTCCTGCCTTCTTCACCCTCTACTAAGTTCCTCTCTGTACTG CCTGACGTGCCTGAAGCCGCGGGGAACGGAAATCTTGCTGCTTTGACTGA TTAG back to topprotein sequence of NO03G05270.1 >NO03G05270.1-protein ID=NO03G05270.1-protein|Name=NO03G05270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp MAGGSSAPDLENVDGRHFDVQRTLGEGGFGKVNAVVKKTEPDVGKWYAMK ALVKEVIVHKQMQEEVLRELALLREVGSSHFVASAYYAFQDFSHLYLVLD LYLGGDLRFHLSKAPERHLSAAQVTFYGASLVLALDFLHTRGVLHRDIKP ENVLMDDKGQIALTDLGISAKIDDTSTRTALICTHTSGTPGYMGPELFWA THRHGIPSEGFSLGVLLYELSTGARPYAHDMFNKLDHHGEEAAYYKDAAA ATEKMPLFKSVPAISAPPEMQALIRQLLRVHPEQRGVNESQGLTSLKTSP AFAGLDWEALSAKTLAPPFVPKKEANVQANMNDLFDEEDDGAVTVVKKKK KNDKVVAGLLTPEQQAAFASYSYNHRKITGNTGIENNEKRSNIRNSIVNI ISFPKSLHQSFESLAGRRSSSSNMSIGGKANDPVGIFLPSSPSTKFLSVL PDVPEAAGNGNLAALTD* back to topmRNA from alignment at chr3:1503984..1505387- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05270.1 ID=NO03G05270.1|Name=NO03G05270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at chr3:1503984..1505387- (Nannochloropsis oceanica) ATGGCGGGTGGGTCAAGTGCCCCTGATTTGGAAAATGTAGATGGGCGGCA
TTTCGACGTGCAGCGAACCTTAGGGGAAGGGGGCTTCGGCAAGGTCAATG
CGGTGGTCAAAAAGACGGAACCAGATGTGGGCAAGTGGTACGCCATGAAA
GCGTTGGTCAAGGAGGTGATTGTCCACAAACAAATGCAAGAGGAAGTCCT
GCGCGAATTGGCCCTGCTCCGCGAGGTTGGAAGCAGTCACTTTGTTGCCT
CAGCCTACTACGCTTTTCAAGACTTTTCCCATCTTTATCTAGTCCTTGAC
TTATATTTGGGCGGCGATTTGCGTTTTCATTTGTCCAAGGCCCCCGAGCG
CCATTTGTCAGCGGCCCAAGTCACGTTTTACGGAGCCTCCCTCGTACTAG
CCCTGGACTTTTTGCATACCCGAGGCGTCTTGCATCGTGACATCAAGCCC
GAGAATGTTCTTATGGACGACAAGGGCCAGATTGCACTGACTGACTTAGG
CATCTCAGCCAAAATTGACGATACCTCGACACGGACAGCCCTGATCTGCA
CACACACCAGCGGCACGCCGGGGTACATGGGACCCGAGCTCTTTTGGGCA
ACCCATCGGCATGGTATCCCTTCCGAAGGATTTTCTTTGGGTGTGTTGCT
ATATGAACTCAGTACGGGGGCTCGGCCATACGCACATGATATGTTTAACA
AGCTGGACCACCACGGCGAGGAGGCCGCGTACTATAAGGACGCCGCCGCT
GCGACTGAGAAGATGCCCCTTTTCAAAAGCGTTCCGGCGATCAGCGCGCC
ACCAGAAATGCAGGCCCTTATCCGCCAGTTGCTTCGAGTTCATCCAGAGC
AGCGTGGTGTGAACGAAAGCCAAGGCCTGACTTCGCTCAAAACCAGTCCG
GCCTTCGCGGGTCTGGACTGGGAGGCCCTCAGCGCCAAGACGCTTGCTCC
TCCCTTTGTGCCCAAGAAGGAGGCCAATGTTCAGGCAAACATGAATGATC
TCTTTGATGAAGAGGATGATGGAGCCGTGACAGTAGTCAAAAAGAAAAAG
AAGAATGATAAAGTCGTCGCGGGCCTCCTGACCCCCGAGCAGCAGGCAGC
CTTCGCGTCATATAGCTACAATCACCGCAAGATCACAGGCAATACCGGAA
TCGAGAACAATGAAAAGAGGTCAAATATCCGCAACTCCATTGTCAACATA
ATTTCCTTCCCAAAGAGCTTGCACCAGAGTTTCGAAAGCCTAGCGGGCAG
AAGATCTTCGTCGTCCAACATGTCCATCGGAGGAAAGGCTAATGACCCCG
TAGGTATTTTCCTGCCTTCTTCACCCTCTACTAAGTTCCTCTCTGTACTG
CCTGACGTGCCTGAAGCCGCGGGGAACGGAAATCTTGCTGCTTTGACTGA
TTAG back to topCoding sequence (CDS) from alignment at chr3:1503984..1505387- >NO03G05270.1 ID=NO03G05270.1|Name=NO03G05270.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr3:1503984..1505387- (Nannochloropsis oceanica) ATGGCGGGTGGGTCAAGTGCCCCTGATTTGGAAAATGTAGATGGGCGGCA TTTCGACGTGCAGCGAACCTTAGGGGAAGGGGGCTTCGGCAAGGTCAATG CGGTGGTCAAAAAGACGGAACCAGATGTGGGCAAGTGGTACGCCATGAAA GCGTTGGTCAAGGAGGTGATTGTCCACAAACAAATGCAAGAGGAAGTCCT GCGCGAATTGGCCCTGCTCCGCGAGGTTGGAAGCAGTCACTTTGTTGCCT CAGCCTACTACGCTTTTCAAGACTTTTCCCATCTTTATCTAGTCCTTGAC TTATATTTGGGCGGCGATTTGCGTTTTCATTTGTCCAAGGCCCCCGAGCG CCATTTGTCAGCGGCCCAAGTCACGTTTTACGGAGCCTCCCTCGTACTAG CCCTGGACTTTTTGCATACCCGAGGCGTCTTGCATCGTGACATCAAGCCC GAGAATGTTCTTATGGACGACAAGGGCCAGATTGCACTGACTGACTTAGG CATCTCAGCCAAAATTGACGATACCTCGACACGGACAGCCCTGATCTGCA CACACACCAGCGGCACGCCGGGGTACATGGGACCCGAGCTCTTTTGGGCA ACCCATCGGCATGGTATCCCTTCCGAAGGATTTTCTTTGGGTGTGTTGCT ATATGAACTCAGTACGGGGGCTCGGCCATACGCACATGATATGTTTAACA AGCTGGACCACCACGGCGAGGAGGCCGCGTACTATAAGGACGCCGCCGCT GCGACTGAGAAGATGCCCCTTTTCAAAAGCGTTCCGGCGATCAGCGCGCC ACCAGAAATGCAGGCCCTTATCCGCCAGTTGCTTCGAGTTCATCCAGAGC AGCGTGGTGTGAACGAAAGCCAAGGCCTGACTTCGCTCAAAACCAGTCCG GCCTTCGCGGGTCTGGACTGGGAGGCCCTCAGCGCCAAGACGCTTGCTCC TCCCTTTGTGCCCAAGAAGGAGGCCAATGTTCAGGCAAACATGAATGATC TCTTTGATGAAGAGGATGATGGAGCCGTGACAGTAGTCAAAAAGAAAAAG AAGAATGATAAAGTCGTCGCGGGCCTCCTGACCCCCGAGCAGCAGGCAGC CTTCGCGTCATATAGCTACAATCACCGCAAGATCACAGGCAATACCGGAA TCGAGAACAATGAAAAGAGGTCAAATATCCGCAACTCCATTGTCAACATA ATTTCCTTCCCAAAGAGCTTGCACCAGAGTTTCGAAAGCCTAGCGGGCAG AAGATCTTCGTCGTCCAACATGTCCATCGGAGGAAAGGCTAATGACCCCG TAGGTATTTTCCTGCCTTCTTCACCCTCTACTAAGTTCCTCTCTGTACTG CCTGACGTGCCTGAAGCCGCGGGGAACGGAAATCTTGCTGCTTTGACTGA TTAG back to top
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