NO03G05270.1, NO03G05270.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05270.1
Unique NameNO03G05270.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1404
Alignment locationchr3:1503984..1505387 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1503984..1505387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G05270.1 vs.
Match: EWM29965.1 (protein kinase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 419.5 bits (1077), Expect = 1.400e-113
Identity = 210/288 (72.92%), Postives = 235/288 (81.60%), Query Frame = 0
Query:    5 SSAPDLENVDGRHFDVQRTLGEGGFGKVNAVVKKTEPDVGKWYAMKALVKEVIVHKQMQEEVLRELALLREVGSSHFVASAYYAFQDFSHLYLVLDLYLGGDLRFHLSKAPERHLSAAQVTFYGASLVLALDFLHTRGVLHRDIKPENVLMDDKGQIALTDLGISAKIDDTSTRTALICTHTSGTPGYMGPELFWATHRHGIPSEGFSLGVLLYELSTGARPYAHDMFNKLDHHGEEAAYYKDAAAATEKMPLFKSVPAISAPPEMQALIRQLLRVHPEQRGVNESQG 293
            SSA D  NVD RHFD+QRTLGEGGFGKVNAV+KK+ PD GKWYAMKALVKEVIV K+M EEV+REL+LL E+G SHFV +A+YAFQD ++LYLVLDLYLGGDLR+HL KA  R LSAAQV FYGASL+LALDFLH+RGVLHRDIKPENVLMDD G IALTDLG+SAK+   STR  LICT TSGTPGYM PE+FW TH+HGIPSE FSLGVLLYEL TG+RP+ HD+F KL HHGEEAAYYK+A  A  +  LF S        E QALIRQLLR+HPE RG  +  G
Sbjct:   20 SSALDPGNVDSRHFDIQRTLGEGGFGKVNAVIKKSGPDSGKWYAMKALVKEVIVRKKMHEEVMRELSLLCELGGSHFVCNAHYAFQDSANLYLVLDLYLGGDLRYHLEKASPRQLSAAQVCFYGASLLLALDFLHSRGVLHRDIKPENVLMDDTGYIALTDLGVSAKVAGASTREKLICTTTSGTPGYMAPEIFWETHQHGIPSEAFSLGVLLYELCTGSRPFPHDLFEKLYHHGEEAAYYKNATTAAGQHSLFTSHTGKGTSKEAQALIRQLLRMHPEHRGSRKEGG 307          
The following BLAST results are available for this feature:
BLAST of NO03G05270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29965.11.400e-11372.92protein kinase domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05270NO03G05270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05270.1NO03G05270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05270.1.cds1NO03G05270.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05270.1 ID=NO03G05270.1|Name=NO03G05270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
ATGGCGGGTGGGTCAAGTGCCCCTGATTTGGAAAATGTAGATGGGCGGCA
TTTCGACGTGCAGCGAACCTTAGGGGAAGGGGGCTTCGGCAAGGTCAATG
CGGTGGTCAAAAAGACGGAACCAGATGTGGGCAAGTGGTACGCCATGAAA
GCGTTGGTCAAGGAGGTGATTGTCCACAAACAAATGCAAGAGGAAGTCCT
GCGCGAATTGGCCCTGCTCCGCGAGGTTGGAAGCAGTCACTTTGTTGCCT
CAGCCTACTACGCTTTTCAAGACTTTTCCCATCTTTATCTAGTCCTTGAC
TTATATTTGGGCGGCGATTTGCGTTTTCATTTGTCCAAGGCCCCCGAGCG
CCATTTGTCAGCGGCCCAAGTCACGTTTTACGGAGCCTCCCTCGTACTAG
CCCTGGACTTTTTGCATACCCGAGGCGTCTTGCATCGTGACATCAAGCCC
GAGAATGTTCTTATGGACGACAAGGGCCAGATTGCACTGACTGACTTAGG
CATCTCAGCCAAAATTGACGATACCTCGACACGGACAGCCCTGATCTGCA
CACACACCAGCGGCACGCCGGGGTACATGGGACCCGAGCTCTTTTGGGCA
ACCCATCGGCATGGTATCCCTTCCGAAGGATTTTCTTTGGGTGTGTTGCT
ATATGAACTCAGTACGGGGGCTCGGCCATACGCACATGATATGTTTAACA
AGCTGGACCACCACGGCGAGGAGGCCGCGTACTATAAGGACGCCGCCGCT
GCGACTGAGAAGATGCCCCTTTTCAAAAGCGTTCCGGCGATCAGCGCGCC
ACCAGAAATGCAGGCCCTTATCCGCCAGTTGCTTCGAGTTCATCCAGAGC
AGCGTGGTGTGAACGAAAGCCAAGGCCTGACTTCGCTCAAAACCAGTCCG
GCCTTCGCGGGTCTGGACTGGGAGGCCCTCAGCGCCAAGACGCTTGCTCC
TCCCTTTGTGCCCAAGAAGGAGGCCAATGTTCAGGCAAACATGAATGATC
TCTTTGATGAAGAGGATGATGGAGCCGTGACAGTAGTCAAAAAGAAAAAG
AAGAATGATAAAGTCGTCGCGGGCCTCCTGACCCCCGAGCAGCAGGCAGC
CTTCGCGTCATATAGCTACAATCACCGCAAGATCACAGGCAATACCGGAA
TCGAGAACAATGAAAAGAGGTCAAATATCCGCAACTCCATTGTCAACATA
ATTTCCTTCCCAAAGAGCTTGCACCAGAGTTTCGAAAGCCTAGCGGGCAG
AAGATCTTCGTCGTCCAACATGTCCATCGGAGGAAAGGCTAATGACCCCG
TAGGTATTTTCCTGCCTTCTTCACCCTCTACTAAGTTCCTCTCTGTACTG
CCTGACGTGCCTGAAGCCGCGGGGAACGGAAATCTTGCTGCTTTGACTGA
TTAG
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protein sequence of NO03G05270.1

>NO03G05270.1-protein ID=NO03G05270.1-protein|Name=NO03G05270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MAGGSSAPDLENVDGRHFDVQRTLGEGGFGKVNAVVKKTEPDVGKWYAMK
ALVKEVIVHKQMQEEVLRELALLREVGSSHFVASAYYAFQDFSHLYLVLD
LYLGGDLRFHLSKAPERHLSAAQVTFYGASLVLALDFLHTRGVLHRDIKP
ENVLMDDKGQIALTDLGISAKIDDTSTRTALICTHTSGTPGYMGPELFWA
THRHGIPSEGFSLGVLLYELSTGARPYAHDMFNKLDHHGEEAAYYKDAAA
ATEKMPLFKSVPAISAPPEMQALIRQLLRVHPEQRGVNESQGLTSLKTSP
AFAGLDWEALSAKTLAPPFVPKKEANVQANMNDLFDEEDDGAVTVVKKKK
KNDKVVAGLLTPEQQAAFASYSYNHRKITGNTGIENNEKRSNIRNSIVNI
ISFPKSLHQSFESLAGRRSSSSNMSIGGKANDPVGIFLPSSPSTKFLSVL
PDVPEAAGNGNLAALTD*
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mRNA from alignment at chr3:1503984..1505387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05270.1 ID=NO03G05270.1|Name=NO03G05270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at chr3:1503984..1505387- (Nannochloropsis oceanica)
ATGGCGGGTGGGTCAAGTGCCCCTGATTTGGAAAATGTAGATGGGCGGCA TTTCGACGTGCAGCGAACCTTAGGGGAAGGGGGCTTCGGCAAGGTCAATG CGGTGGTCAAAAAGACGGAACCAGATGTGGGCAAGTGGTACGCCATGAAA GCGTTGGTCAAGGAGGTGATTGTCCACAAACAAATGCAAGAGGAAGTCCT GCGCGAATTGGCCCTGCTCCGCGAGGTTGGAAGCAGTCACTTTGTTGCCT CAGCCTACTACGCTTTTCAAGACTTTTCCCATCTTTATCTAGTCCTTGAC TTATATTTGGGCGGCGATTTGCGTTTTCATTTGTCCAAGGCCCCCGAGCG CCATTTGTCAGCGGCCCAAGTCACGTTTTACGGAGCCTCCCTCGTACTAG CCCTGGACTTTTTGCATACCCGAGGCGTCTTGCATCGTGACATCAAGCCC GAGAATGTTCTTATGGACGACAAGGGCCAGATTGCACTGACTGACTTAGG CATCTCAGCCAAAATTGACGATACCTCGACACGGACAGCCCTGATCTGCA CACACACCAGCGGCACGCCGGGGTACATGGGACCCGAGCTCTTTTGGGCA ACCCATCGGCATGGTATCCCTTCCGAAGGATTTTCTTTGGGTGTGTTGCT ATATGAACTCAGTACGGGGGCTCGGCCATACGCACATGATATGTTTAACA AGCTGGACCACCACGGCGAGGAGGCCGCGTACTATAAGGACGCCGCCGCT GCGACTGAGAAGATGCCCCTTTTCAAAAGCGTTCCGGCGATCAGCGCGCC ACCAGAAATGCAGGCCCTTATCCGCCAGTTGCTTCGAGTTCATCCAGAGC AGCGTGGTGTGAACGAAAGCCAAGGCCTGACTTCGCTCAAAACCAGTCCG GCCTTCGCGGGTCTGGACTGGGAGGCCCTCAGCGCCAAGACGCTTGCTCC TCCCTTTGTGCCCAAGAAGGAGGCCAATGTTCAGGCAAACATGAATGATC TCTTTGATGAAGAGGATGATGGAGCCGTGACAGTAGTCAAAAAGAAAAAG AAGAATGATAAAGTCGTCGCGGGCCTCCTGACCCCCGAGCAGCAGGCAGC CTTCGCGTCATATAGCTACAATCACCGCAAGATCACAGGCAATACCGGAA TCGAGAACAATGAAAAGAGGTCAAATATCCGCAACTCCATTGTCAACATA ATTTCCTTCCCAAAGAGCTTGCACCAGAGTTTCGAAAGCCTAGCGGGCAG AAGATCTTCGTCGTCCAACATGTCCATCGGAGGAAAGGCTAATGACCCCG TAGGTATTTTCCTGCCTTCTTCACCCTCTACTAAGTTCCTCTCTGTACTG CCTGACGTGCCTGAAGCCGCGGGGAACGGAAATCTTGCTGCTTTGACTGA TTAG
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Coding sequence (CDS) from alignment at chr3:1503984..1505387-

>NO03G05270.1 ID=NO03G05270.1|Name=NO03G05270.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr3:1503984..1505387- (Nannochloropsis oceanica)
ATGGCGGGTGGGTCAAGTGCCCCTGATTTGGAAAATGTAGATGGGCGGCA
TTTCGACGTGCAGCGAACCTTAGGGGAAGGGGGCTTCGGCAAGGTCAATG
CGGTGGTCAAAAAGACGGAACCAGATGTGGGCAAGTGGTACGCCATGAAA
GCGTTGGTCAAGGAGGTGATTGTCCACAAACAAATGCAAGAGGAAGTCCT
GCGCGAATTGGCCCTGCTCCGCGAGGTTGGAAGCAGTCACTTTGTTGCCT
CAGCCTACTACGCTTTTCAAGACTTTTCCCATCTTTATCTAGTCCTTGAC
TTATATTTGGGCGGCGATTTGCGTTTTCATTTGTCCAAGGCCCCCGAGCG
CCATTTGTCAGCGGCCCAAGTCACGTTTTACGGAGCCTCCCTCGTACTAG
CCCTGGACTTTTTGCATACCCGAGGCGTCTTGCATCGTGACATCAAGCCC
GAGAATGTTCTTATGGACGACAAGGGCCAGATTGCACTGACTGACTTAGG
CATCTCAGCCAAAATTGACGATACCTCGACACGGACAGCCCTGATCTGCA
CACACACCAGCGGCACGCCGGGGTACATGGGACCCGAGCTCTTTTGGGCA
ACCCATCGGCATGGTATCCCTTCCGAAGGATTTTCTTTGGGTGTGTTGCT
ATATGAACTCAGTACGGGGGCTCGGCCATACGCACATGATATGTTTAACA
AGCTGGACCACCACGGCGAGGAGGCCGCGTACTATAAGGACGCCGCCGCT
GCGACTGAGAAGATGCCCCTTTTCAAAAGCGTTCCGGCGATCAGCGCGCC
ACCAGAAATGCAGGCCCTTATCCGCCAGTTGCTTCGAGTTCATCCAGAGC
AGCGTGGTGTGAACGAAAGCCAAGGCCTGACTTCGCTCAAAACCAGTCCG
GCCTTCGCGGGTCTGGACTGGGAGGCCCTCAGCGCCAAGACGCTTGCTCC
TCCCTTTGTGCCCAAGAAGGAGGCCAATGTTCAGGCAAACATGAATGATC
TCTTTGATGAAGAGGATGATGGAGCCGTGACAGTAGTCAAAAAGAAAAAG
AAGAATGATAAAGTCGTCGCGGGCCTCCTGACCCCCGAGCAGCAGGCAGC
CTTCGCGTCATATAGCTACAATCACCGCAAGATCACAGGCAATACCGGAA
TCGAGAACAATGAAAAGAGGTCAAATATCCGCAACTCCATTGTCAACATA
ATTTCCTTCCCAAAGAGCTTGCACCAGAGTTTCGAAAGCCTAGCGGGCAG
AAGATCTTCGTCGTCCAACATGTCCATCGGAGGAAAGGCTAATGACCCCG
TAGGTATTTTCCTGCCTTCTTCACCCTCTACTAAGTTCCTCTCTGTACTG
CCTGACGTGCCTGAAGCCGCGGGGAACGGAAATCTTGCTGCTTTGACTGA
TTAG
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Synonyms
Publications