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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1497065..1499475 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05250.1 vs.
Match: EWM29966.1 (zeta-carotene desaturase [Nannochloropsis gaditana]) HSP 1 Score: 1058.9 bits (2737), Expect = 6.100e-306 Identity = 533/615 (86.67%), Postives = 564/615 (91.71%), Query Frame = 0
Query: 16 AMATLLFASSCTTSAFLLPATSPVSAPSSRLPTAGFRQRATTVMSSVITQPVEAIRGSDKEKLLDLSVLDRAMSGPPANLRVKNKNTEQLRVGIIGGGLGGLITAMDLAEAGHQVEIFEARRFAGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGIMKRLGIFESSLRLKDHTHSFINKGGRVGELDFRFGGIGAPINGLKAFATTTQLEIGDKIANAVALATSPVVKALFNFDAAMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCDNISARCMLTIFQLFAVRSEASVLRMCEGSPNTYLHEPILDYLKARGVKLHLNSRIQDLVYDTDAGSGKPTRVKGFTLSGKANTEDGKEAGAAGGVGVAGEERLFDCVVAACDVPGIQKLLPESFRKIQEFDNIYKLTAVPVTTVQLRFNGWVTELQDMEKMKEVSGDKSNGKAPGIDNLLYSADAEFSCFADLALTSPAEYYKEGEGTLLQCVLTPGDKWMPVSTEKIAEATLKQVLDLFPSARGLECTWTNVVKLGQSLYREAPGMDVYRPKQKSPVENFYLAGSYTYQDYIDSMEGATKSGLLCADVILRDAKEIKERAESQGVGAGKQAVMSA 631
A+ TL+ ++ +AFLLP T+ VS P A +T + T PVE +RGSDKEKLLDLSVLDRAMSGPPANLRVK+ +TE+LRVGIIGGGLGGLITAMDL+EAGH+VEIFEARRFAGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGIMKRLG+FESSLRLKDHTHSFINKGGRVGELDFRFGGIGAP+NGLKAFATT+QLEIGDKIANAVALATSPVVKALF+FDAAMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCD+ISARCMLTIFQLFAVRSEASVLRMCEGSPNTYLHEPIL YLKARGV LHLNSRIQDLVYDTDA +G P+RVKG LSGKANTEDGKEAGAAGGVG AGE+RLFDCVVAACDVPGIQKLLPESFRKIQEFDNIY+L AVPVTTVQLRFNGWVTEL D +MKE++GD SNG+APG+DNLLYSADAEFSCFADLALTSPAEYYKEGEG+LLQCVLTPGDKWMPVSTEKIAEATLKQVLDLFPSARGLECTWTNVVKLGQSLYREAPGMDVYRPKQKSPVENFYLAGSYTYQDYIDSMEGATKSGLLCAD ILRDAK IK RA S+ + AVMSA
Sbjct: 12 AVITLVQSTYSIATAFLLPHTTRVSQPHRSTSPA------STTRAPASTLPVEQVRGSDKEKLLDLSVLDRAMSGPPANLRVKDTSTERLRVGIIGGGLGGLITAMDLSEAGHEVEIFEARRFAGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGIMKRLGVFESSLRLKDHTHSFINKGGRVGELDFRFGGIGAPVNGLKAFATTSQLEIGDKIANAVALATSPVVKALFDFDAAMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCDHISARCMLTIFQLFAVRSEASVLRMCEGSPNTYLHEPILAYLKARGVTLHLNSRIQDLVYDTDASTGAPSRVKGLVLSGKANTEDGKEAGAAGGVGAAGEQRLFDCVVAACDVPGIQKLLPESFRKIQEFDNIYRLEAVPVTTVQLRFNGWVTELNDPVRMKEINGDFSNGRAPGLDNLLYSADAEFSCFADLALTSPAEYYKEGEGSLLQCVLTPGDKWMPVSTEKIAEATLKQVLDLFPSARGLECTWTNVVKLGQSLYREAPGMDVYRPKQKSPVENFYLAGSYTYQDYIDSMEGATKSGLLCADQILRDAKTIKARASSKEDMIKEAAVMSA 620
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05250.1 ID=NO03G05250.1|Name=NO03G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2132bp
AACTACAGGGACGACGGCCAGCAGCGCCATGACAAGCCCCATCAAGACAA
GTAGAAGAGGCACGACCGCGGCCGCCATGGCCACGCTTCTCTTCGCCTCC
TCCTGCACGACCTCGGCTTTCCTCCTCCCTGCCACCTCCCCCGTCTCCGC
CCCCTCCTCCCGTCTCCCGACTGCAGGCTTTCGACAGAGGGCAACTACGG
TAATGTCTTCTGTGATCACGCAACCGGTCGAGGCAATCCGTGGCTCGGAC
AAGGAGAAGCTCTTGGATCTGTCCGTATTGGATCGTGCTATGTCTGGCCC
TCCCGCCAACTTGCGGGTCAAGAACAAGAATACGGAGCAGCTTCGTGTAG
GGATAATTGGTGGAGGCTTGGGGGGTTTAATTACGGCGATGGACTTGGCT
GAGGCAGGTCACCAGGTCGAGATTTTTGAGGCGCGGCGTTTTGCGGGGGG
GAAGGTCGGGTCGTGGGTGGACAAGGACGGGAACCACATTGAGATGGGCC
TGCATGTCTTCTTCGGCTGTTACTACAACCTGTTTGGTATCATGAAGCGG
CTGGGTATTTTCGAGTCCTCCCTCCGGCTCAAGGACCACACCCACTCCTT
CATCAATAAGGGCGGGCGTGTGGGTGAGCTCGACTTCCGCTTTGGCGGCA
TCGGTGCTCCTATCAATGGTCTCAAGGCCTTTGCCACCACAACGCAATTG
GAAATCGGCGACAAAATTGCGAACGCTGTGGCGCTGGCTACGAGTCCTGT
AGTGAAGGCGCTGTTTAATTTTGACGCGGCCATGGAGGATGTTCGGGCGT
TAGACGGCATTTCCTTCTCCGAGTGGTTCTTGAGGAAGGGCGGGAGCAGG
GGGAGCATGACGAGAATGTGGGACCCGATCGCGTATGCTTTGGGGTTCAT
CGACTGTGACAACATCTCGGCCAGGTGCATGCTTACGATTTTCCAGCTCT
TCGCCGTCAGGTCCGAGGCCTCGGTCTTGCGCATGTGTGAGGGTTCCCCT
AACACCTACCTCCATGAACCTATCCTGGATTACCTCAAGGCACGAGGCGT
GAAGTTACACTTGAATTCTCGTATTCAAGACTTGGTTTATGACACGGACG
CGGGTTCGGGGAAGCCGACGCGGGTCAAGGGGTTTACCCTGTCGGGGAAG
GCCAATACGGAGGACGGGAAGGAGGCGGGCGCCGCGGGAGGGGTGGGGGT
TGCGGGGGAGGAGAGGCTGTTTGATTGTGTGGTGGCGGCCTGTGATGTTC
CCGGTATTCAAAAGCTGCTGCCGGAGAGCTTTAGGAAGATTCAAGAGTTC
GATAACATTTACAAACTGACTGCGGTGCCGGTGACCACGGTGCAACTCCG
GTTTAACGGCTGGGTCACGGAACTCCAGGACATGGAGAAGATGAAGGAAG
TCTCGGGGGACAAGTCCAATGGCAAGGCCCCGGGTATTGATAATCTTCTC
TATAGTGCCGATGCCGAGTTCTCGTGTTTCGCCGACCTGGCCTTGACGAG
CCCTGCAGAGTACTACAAGGAGGGAGAGGGCACGCTGCTGCAATGCGTCC
TGACGCCGGGCGACAAGTGGATGCCTGTCTCGACCGAGAAAATTGCCGAG
GCCACGTTGAAGCAAGTGCTTGACCTCTTCCCGTCGGCACGCGGGTTGGA
GTGCACGTGGACGAACGTGGTAAAGCTGGGCCAGAGTCTGTATAGGGAAG
CACCGGGGATGGACGTATACCGGCCGAAGCAGAAGAGTCCCGTGGAAAAC
TTTTATTTGGCGGGCTCGTACACCTACCAGGACTACATCGATTCCATGGA
GGGTGCAACGAAGAGCGGATTGTTGTGTGCAGATGTCATTTTGAGGGACG
CGAAGGAGATCAAGGAGCGGGCAGAATCTCAGGGGGTAGGCGCGGGGAAA
CAGGCAGTGATGTCGGCTTAAGGGAAGGGAGAGAGGAGGGAGGAAGAGGA
GGAGGGAGGGTATTTACAGTAGAAAGTGTCGTCGATTGTGAGTGTGTGGC
ATGGATGCGGGTGAGAGAGGTGTGTTGGACGTGTTTACGCCCGTCACACA
TGCACTAGAGCGAGAGGAGAGAAAAGGGTAGAAAATTTAAAACTGGGAAA
GAAAAGAAACAAGAAGAAGAAGAAGCAGAAAC back to topprotein sequence of NO03G05250.1 >NO03G05250.1-protein ID=NO03G05250.1-protein|Name=NO03G05250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MTSPIKTSRRGTTAAAMATLLFASSCTTSAFLLPATSPVSAPSSRLPTAG
FRQRATTVMSSVITQPVEAIRGSDKEKLLDLSVLDRAMSGPPANLRVKNK
NTEQLRVGIIGGGLGGLITAMDLAEAGHQVEIFEARRFAGGKVGSWVDKD
GNHIEMGLHVFFGCYYNLFGIMKRLGIFESSLRLKDHTHSFINKGGRVGE
LDFRFGGIGAPINGLKAFATTTQLEIGDKIANAVALATSPVVKALFNFDA
AMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCDNISARC
MLTIFQLFAVRSEASVLRMCEGSPNTYLHEPILDYLKARGVKLHLNSRIQ
DLVYDTDAGSGKPTRVKGFTLSGKANTEDGKEAGAAGGVGVAGEERLFDC
VVAACDVPGIQKLLPESFRKIQEFDNIYKLTAVPVTTVQLRFNGWVTELQ
DMEKMKEVSGDKSNGKAPGIDNLLYSADAEFSCFADLALTSPAEYYKEGE
GTLLQCVLTPGDKWMPVSTEKIAEATLKQVLDLFPSARGLECTWTNVVKL
GQSLYREAPGMDVYRPKQKSPVENFYLAGSYTYQDYIDSMEGATKSGLLC
ADVILRDAKEIKERAESQGVGAGKQAVMSA* back to topmRNA from alignment at chr3:1497065..1499475- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05250.1 ID=NO03G05250.1|Name=NO03G05250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2411bp|location=Sequence derived from alignment at chr3:1497065..1499475- (Nannochloropsis oceanica)
AACTACAGGGACGACGGCCAGCAGCGCCATGACAAGCCCCATCAAGACAA
GTAGAAGAGGCACGACCGCGGCCGCCATGGCCACGCTTCTCTTCGCCTCC
TCCTGCACGACCTCGGCTTTCCTCCTCCCTGCCACCTCCCCCGTCTCCGC
CCCCTCCTCCCGTCTCCCGACTGCAGGCTTTCGACAGAGGGCAACTACGG
TAATGTCTTCTGTGATCACGCAACCGGTCGAGGCAATCCGTGGCTCGGAC
AAGGAGAAGCTCTTGGATCTGTCCGTATTGGATCGTGCTATGTCTGGCCC
TCCCGCCAACTTGCGGGTCAAGAACAAGAATACGGAGCAGCTTCGTGTAG
GGATAATTGGTGGAGGCTTGGGGGGTTTAATTACGGCGATGGACTTGGCT
GAGGCAGGTCACCAGGTCGAGATTTTTGAGGCGCGGCGTTTTGCGGGGGG
GAAGGTCGGGTCGTGGGTGGACAAGGACGGGAACCACATTGAGATGGGTG
AGTTGAGAGAAGAGGGAGGGAACGGTAATGACGAAGAATTTATTTGTTTC
AATTGCATAAAATTCACTTTCTGCTCTTACAATATAACCCCTCATATCAT
CTCATCATTTCCCTTCCCCCTCCGCCCTTTTCCTTTCCCTCCCTACCGTT
CCCTCCCTCCCTTCCCCACGCACACAGGCCTGCATGTCTTCTTCGGCTGT
TACTACAACCTGTTTGGTATCATGAAGCGGCTGGGTATTTTCGAGTCCTC
CCTCCGGCTCAAGGACCACACCCACTCCTTCATCAATAAGGGCGGGCGTG
TGGGTGAGCTCGACTTCCGCTTTGGCGGCATCGGTGCTCCTATCAATGGT
CTCAAGGCCTTTGCCACCACAACGCAATTGGAAATCGGCGACAAAATTGC
GAACGCTGTGGCGCTGGCTACGAGTCCTGTAGTGAAGGCGCTGTTTAATT
TTGACGCGGCCATGGAGGATGTTCGGGCGTTAGACGGCATTTCCTTCTCC
GAGTGGTTCTTGAGGAAGGGCGGGAGCAGGGGGAGCATGACGAGAATGTG
GGACCCGATCGCGTATGCTTTGGGGTTCATCGACTGTGACAACATCTCGG
CCAGGTGCATGCTTACGATTTTCCAGCTCTTCGCCGTCAGGTCCGAGGCC
TCGGTCTTGCGCATGTGTGAGGGTTCCCCTAACACCTACCTCCATGAACC
TATCCTGGATTACCTCAAGGCACGAGGCGTGAAGTTACACTTGAATTCTC
GTATTCAAGACTTGGTTTATGACACGGACGCGGGTTCGGGGAAGCCGACG
CGGGTCAAGGGGTTTACCCTGTCGGGGAAGGCCAATACGGAGGACGGGAA
GGAGGCGGGCGCCGCGGGAGGGGTGGGGGTTGCGGGGGAGGAGAGGCTGT
TTGATTGTGTGGTGGCGGCCTGTGATGTTCCCGGTATTCAAAAGCTGCTG
CCGGAGAGCTTTAGGAAGATTCAAGAGTTCGATAACATTTACAAACTGAC
TGCGGTGCCGGTGACCACGGTAAGAGAGTGAGGGTTTTGAGTGTTGAGGT
GTGCAATCATGGCTAAGGACATTATATGTGGGTTTTTCCTCACCATCGCT
TCCTTCCTCTCTCCCCAGGTGCAACTCCGGTTTAACGGCTGGGTCACGGA
ACTCCAGGACATGGAGAAGATGAAGGAAGTCTCGGGGGACAAGTCCAATG
GCAAGGCCCCGGGTATTGATAATCTTCTCTATAGTGCCGATGCCGAGTTC
TCGTGTTTCGCCGACCTGGCCTTGACGAGCCCTGCAGAGTACTACAAGGA
GGGAGAGGGCACGCTGCTGCAATGCGTCCTGACGCCGGGCGACAAGTGGA
TGCCTGTCTCGACCGAGAAAATTGCCGAGGCCACGTTGAAGCAAGTGCTT
GACCTCTTCCCGTCGGCACGCGGGTTGGAGTGCACGTGGACGAACGTGGT
AAAGCTGGGCCAGAGTCTGTATAGGGAAGCACCGGGGATGGACGTATACC
GGCCGAAGCAGAAGAGTCCCGTGGAAAACTTTTATTTGGCGGGCTCGTAC
ACCTACCAGGACTACATCGATTCCATGGAGGGTGCAACGAAGAGCGGATT
GTTGTGTGCAGATGTCATTTTGAGGGACGCGAAGGAGATCAAGGAGCGGG
CAGAATCTCAGGGGGTAGGCGCGGGGAAACAGGCAGTGATGTCGGCTTAA
GGGAAGGGAGAGAGGAGGGAGGAAGAGGAGGAGGGAGGGTATTTACAGTA
GAAAGTGTCGTCGATTGTGAGTGTGTGGCATGGATGCGGGTGAGAGAGGT
GTGTTGGACGTGTTTACGCCCGTCACACATGCACTAGAGCGAGAGGAGAG
AAAAGGGTAGAAAATTTAAAACTGGGAAAGAAAAGAAACAAGAAGAAGAA
GAAGCAGAAAC back to topCoding sequence (CDS) from alignment at chr3:1497065..1499475- >NO03G05250.1 ID=NO03G05250.1|Name=NO03G05250.1|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at chr3:1497065..1499475- (Nannochloropsis oceanica)
ATGACAAGCCCCATCAAGACAAGTAGAAGAGGCACGACCGCGGCCGCCAT
GGCCACGCTTCTCTTCGCCTCCTCCTGCACGACCTCGGCTTTCCTCCTCC
CTGCCACCTCCCCCGTCTCCGCCCCCTCCTCCCGTCTCCCGACTGCAGGC
TTTCGACAGAGGGCAACTACGGTAATGTCTTCTGTGATCACGCAACCGGT
CGAGGCAATCCGTGGCTCGGACAAGGAGAAGCTCTTGGATCTGTCCGTAT
TGGATCGTGCTATGTCTGGCCCTCCCGCCAACTTGCGGGTCAAGAACAAG
AATACGGAGCAGCTTCGTGTAGGGATAATTGGTGGAGGCTTGGGGGGTTT
AATTACGGCGATGGACTTGGCTGAGGCAGGTCACCAGGTCGAGATTTTTG
AGGCGCGGCGTTTTGCGGGGGGGAAGGTCGGGTCGTGGGTGGACAAGGAC
GGGAACCACATTGAGATGGGCCTGCATGTCTTCTTCGGCTGTTACTACAA
CCTGTTTGGTATCATGAAGCGGCTGGGTATTTTCGAGTCCTCCCTCCGGC
TCAAGGACCACACCCACTCCTTCATCAATAAGGGCGGGCGTGTGGGTGAG
CTCGACTTCCGCTTTGGCGGCATCGGTGCTCCTATCAATGGTCTCAAGGC
CTTTGCCACCACAACGCAATTGGAAATCGGCGACAAAATTGCGAACGCTG
TGGCGCTGGCTACGAGTCCTGTAGTGAAGGCGCTGTTTAATTTTGACGCG
GCCATGGAGGATGTTCGGGCGTTAGACGGCATTTCCTTCTCCGAGTGGTT
CTTGAGGAAGGGCGGGAGCAGGGGGAGCATGACGAGAATGTGGGACCCGA
TCGCGTATGCTTTGGGGTTCATCGACTGTGACAACATCTCGGCCAGGTGC
ATGCTTACGATTTTCCAGCTCTTCGCCGTCAGGTCCGAGGCCTCGGTCTT
GCGCATGTGTGAGGGTTCCCCTAACACCTACCTCCATGAACCTATCCTGG
ATTACCTCAAGGCACGAGGCGTGAAGTTACACTTGAATTCTCGTATTCAA
GACTTGGTTTATGACACGGACGCGGGTTCGGGGAAGCCGACGCGGGTCAA
GGGGTTTACCCTGTCGGGGAAGGCCAATACGGAGGACGGGAAGGAGGCGG
GCGCCGCGGGAGGGGTGGGGGTTGCGGGGGAGGAGAGGCTGTTTGATTGT
GTGGTGGCGGCCTGTGATGTTCCCGGTATTCAAAAGCTGCTGCCGGAGAG
CTTTAGGAAGATTCAAGAGTTCGATAACATTTACAAACTGACTGCGGTGC
CGGTGACCACGGTGCAACTCCGGTTTAACGGCTGGGTCACGGAACTCCAG
GACATGGAGAAGATGAAGGAAGTCTCGGGGGACAAGTCCAATGGCAAGGC
CCCGGGTATTGATAATCTTCTCTATAGTGCCGATGCCGAGTTCTCGTGTT
TCGCCGACCTGGCCTTGACGAGCCCTGCAGAGTACTACAAGGAGGGAGAG
GGCACGCTGCTGCAATGCGTCCTGACGCCGGGCGACAAGTGGATGCCTGT
CTCGACCGAGAAAATTGCCGAGGCCACGTTGAAGCAAGTGCTTGACCTCT
TCCCGTCGGCACGCGGGTTGGAGTGCACGTGGACGAACGTGGTAAAGCTG
GGCCAGAGTCTGTATAGGGAAGCACCGGGGATGGACGTATACCGGCCGAA
GCAGAAGAGTCCCGTGGAAAACTTTTATTTGGCGGGCTCGTACACCTACC
AGGACTACATCGATTCCATGGAGGGTGCAACGAAGAGCGGATTGTTGTGT
GCAGATGTCATTTTGAGGGACGCGAAGGAGATCAAGGAGCGGGCAGAATC
TCAGGGGGTAGGCGCGGGGAAACAGGCAGTGATGTCGGCTTAA back to top
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