NO03G05240.1, NO03G05240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05240.1
Unique NameNO03G05240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1473
Alignment locationchr3:1495566..1497038 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1495566..1497038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05240.1 vs.
Match: XP_004958313.1 (uncharacterized protein LOC101766172 [Setaria italica]; KQL26668.1 hypothetical protein SETIT_029768mg [Setaria italica])

HSP 1 Score: 145.2 bits (365), Expect = 4.000e-31
Identity = 88/213 (41.31%), Postives = 125/213 (58.69%), Query Frame = 0 
Query:  159 YLNMPFAFSMEQEIRKARNICKNLKDFPAYLDGKLVSSQI-KQADAVVFLTNARAGIFMTGHVGSGLVVARNSDGSWSAPSAVFYLGSGMGLQGGADVTDYVVILK-RQAVDSFAGNNQLVLGGDVGATFW-MGRHGTAELHIG-KRTGMALGWAASKGFFAGAAATAGYLCTRGGINKKFYG-REVDPCDLLHGKISKPRAAKPLYEALNDL 367
            +LNMP   SME EI KA N  K           K + S I K A  +  LT A+AG  +T  VG+GLVVAR SDGSWSAPSA+  +G G G+Q G ++TD++++L+ R+AV +F+    L LG  + A    +GR   A++    K +G+   ++ SKG F G +     + TR   N +FYG   +   D+L G++ +PRAA+PLY AL+DL
Sbjct:  244 WLNMPVGVSMEYEIYKATNTMKKYCQVARLNPEKSIPSSILKGAKGLAILTVAKAGAVLTYKVGTGLVVARRSDGSWSAPSAILSVGLGWGVQIGGELTDFIIVLRDRKAVKAFSSRIHLSLGAGLSAAAGPIGRAFEADVRASEKGSGICYSYSCSKGAFVGVSLEGNIVTTRSETNLRFYGDAYLTTTDILFGRVERPRAAQPLYSALDDL 456
The following BLAST results are available for this feature:
BLAST of NO03G05240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_004958313.14.000e-3141.31uncharacterized protein LOC101766172 [Setaria ital... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05240NO03G05240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05240.1NO03G05240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05240.1.cds1NO03G05240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05240.1 ID=NO03G05240.1|Name=NO03G05240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
GGGATATGCGCGACAAGAAGATTCCAGAAGAAAAAGTGTGTTCCAAAGTA
TATGAAGATGTTCTTTTTAAGAGGATCAAGTCAATTAAGTCGTATGCTTT
TTTTTGTATATCTTTATACTTGGGTATGCGGCAACTGTGGGGAAGCTACG
TGCAGGCACCTTTGGCCGGAACTCCTTGTTCGCTTGCATGTATGTCTCGG
GCTTCCCTCTACGCGCTGGTGCTCCCTCACTGTTTTTCCCCTTGCTCTAC
GTTTACATTTTTCAATTACAGCAATATTCAGCTTTCTTCCGACTATCGAC
GCCACCGCCCTCACCGTATCAACACTGGCAGTAACGACGAAACAACAGCC
AGCGAAATGACCACCAACATTCAGCAGACAATGGGGCAGATGGGGCAGTT
CGTGGAACGTGGTGTGAAGCAACTGGTACCCTCAGAAATGGAGCACACAG
TGGACGAGGGCCAGGCCATTTTGGGGCGCTACCTGAACATGCCCTTCGCA
TTTAGCATGGAACAAGAGATCCGTAAGGCTCGCAACATTTGCAAGAACCT
CAAGGACTTCCCTGCCTACCTCGACGGCAAGCTGGTATCCTCTCAAATCA
AGCAGGCCGACGCGGTGGTATTCTTAACGAATGCCCGTGCGGGCATCTTT
ATGACGGGCCACGTCGGGTCTGGCTTGGTAGTGGCACGCAACTCGGACGG
GTCCTGGTCGGCGCCCTCAGCCGTCTTCTACCTTGGCTCGGGTATGGGCC
TGCAAGGCGGCGCAGATGTGACGGACTACGTGGTCATTCTGAAGCGCCAA
GCTGTGGACTCCTTCGCGGGTAACAACCAGCTGGTCTTGGGCGGCGACGT
CGGCGCGACATTTTGGATGGGGCGTCACGGCACGGCTGAGCTCCATATTG
GAAAGCGGACCGGTATGGCATTGGGCTGGGCGGCGAGCAAAGGGTTTTTT
GCAGGCGCAGCGGCCACAGCTGGCTATCTTTGCACTCGTGGTGGCATCAA
CAAGAAATTTTACGGCCGTGAAGTGGACCCCTGTGACCTGCTCCACGGGA
AGATCAGCAAGCCTCGAGCCGCCAAGCCCCTGTACGAGGCCCTCAACGAC
TTGCCGTAATGTGCTGGGCAGGAGAAGGAAGAAGGTAGAACAATTTTGGT
GTTTGAGAAAGAAGGGCAGTGGTCCTTAAACAGAAAGGAATGGAAGGTAA
GGTTAGTGCGGTGCTTGACTTGTGTGGTACATGAAAGACGATATTGGCAG
AAGCAGCAGTGGTCATTTTAATAAGAACAACAACAATTCCAGCAACACGT
ATGAAGAAAGCCACGAAGAGAGACAAGCAAGTGTCTGCATTGTTCATTAT
GTGTGTGTGCATGCGAGGGTTCCGTATGTCCCGTCTGCGGAAGAGCGGCT
GCTTGTCTAACCATGCTTGGGGGTGTAGTTAAGTGGGAGGTAAGAGAAAG
CATGACTCGAGAGAAAAATGGGG
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protein sequence of NO03G05240.1

>NO03G05240.1-protein ID=NO03G05240.1-protein|Name=NO03G05240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MRDKKIPEEKVCSKVYEDVLFKRIKSIKSYAFFCISLYLGMRQLWGSYVQ
APLAGTPCSLACMSRASLYALVLPHCFSPCSTFTFFNYSNIQLSSDYRRH
RPHRINTGSNDETTASEMTTNIQQTMGQMGQFVERGVKQLVPSEMEHTVD
EGQAILGRYLNMPFAFSMEQEIRKARNICKNLKDFPAYLDGKLVSSQIKQ
ADAVVFLTNARAGIFMTGHVGSGLVVARNSDGSWSAPSAVFYLGSGMGLQ
GGADVTDYVVILKRQAVDSFAGNNQLVLGGDVGATFWMGRHGTAELHIGK
RTGMALGWAASKGFFAGAAATAGYLCTRGGINKKFYGREVDPCDLLHGKI
SKPRAAKPLYEALNDLP*
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mRNA from alignment at chr3:1495566..1497038+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05240.1 ID=NO03G05240.1|Name=NO03G05240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at chr3:1495566..1497038+ (Nannochloropsis oceanica)
GGGATATGCGCGACAAGAAGATTCCAGAAGAAAAAGTGTGTTCCAAAGTA
TATGAAGATGTTCTTTTTAAGAGGATCAAGTCAATTAAGTCGTATGCTTT
TTTTTGTATATCTTTATACTTGGGTATGCGGCAACTGTGGGGAAGCTACG
TGCAGGCACCTTTGGCCGGAACTCCTTGTTCGCTTGCATGTATGTCTCGG
GCTTCCCTCTACGCGCTGGTGCTCCCTCACTGTTTTTCCCCTTGCTCTAC
GTTTACATTTTTCAATTACAGCAATATTCAGCTTTCTTCCGACTATCGAC
GCCACCGCCCTCACCGTATCAACACTGGCAGTAACGACGAAACAACAGCC
AGCGAAATGACCACCAACATTCAGCAGACAATGGGGCAGATGGGGCAGTT
CGTGGAACGTGGTGTGAAGCAACTGGTACCCTCAGAAATGGAGCACACAG
TGGACGAGGGCCAGGCCATTTTGGGGCGCTACCTGAACATGCCCTTCGCA
TTTAGCATGGAACAAGAGATCCGTAAGGCTCGCAACATTTGCAAGAACCT
CAAGGACTTCCCTGCCTACCTCGACGGCAAGCTGGTATCCTCTCAAATCA
AGCAGGCCGACGCGGTGGTATTCTTAACGAATGCCCGTGCGGGCATCTTT
ATGACGGGCCACGTCGGGTCTGGCTTGGTAGTGGCACGCAACTCGGACGG
GTCCTGGTCGGCGCCCTCAGCCGTCTTCTACCTTGGCTCGGGTATGGGCC
TGCAAGGCGGCGCAGATGTGACGGACTACGTGGTCATTCTGAAGCGCCAA
GCTGTGGACTCCTTCGCGGGTAACAACCAGCTGGTCTTGGGCGGCGACGT
CGGCGCGACATTTTGGATGGGGCGTCACGGCACGGCTGAGCTCCATATTG
GAAAGCGGACCGGTATGGCATTGGGCTGGGCGGCGAGCAAAGGGTTTTTT
GCAGGCGCAGCGGCCACAGCTGGCTATCTTTGCACTCGTGGTGGCATCAA
CAAGAAATTTTACGGCCGTGAAGTGGACCCCTGTGACCTGCTCCACGGGA
AGATCAGCAAGCCTCGAGCCGCCAAGCCCCTGTACGAGGCCCTCAACGAC
TTGCCGTAATGTGCTGGGCAGGAGAAGGAAGAAGGTAGAACAATTTTGGT
GTTTGAGAAAGAAGGGCAGTGGTCCTTAAACAGAAAGGAATGGAAGGTAA
GGTTAGTGCGGTGCTTGACTTGTGTGGTACATGAAAGACGATATTGGCAG
AAGCAGCAGTGGTCATTTTAATAAGAACAACAACAATTCCAGCAACACGT
ATGAAGAAAGCCACGAAGAGAGACAAGCAAGTGTCTGCATTGTTCATTAT
GTGTGTGTGCATGCGAGGGTTCCGTATGTCCCGTCTGCGGAAGAGCGGCT
GCTTGTCTAACCATGCTTGGGGGTGTAGTTAAGTGGGAGGTAAGAGAAAG
CATGACTCGAGAGAAAAATGGGG
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Coding sequence (CDS) from alignment at chr3:1495566..1497038+

>NO03G05240.1 ID=NO03G05240.1|Name=NO03G05240.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr3:1495566..1497038+ (Nannochloropsis oceanica)
ATGCGCGACAAGAAGATTCCAGAAGAAAAAGTGTGTTCCAAAGTATATGA
AGATGTTCTTTTTAAGAGGATCAAGTCAATTAAGTCGTATGCTTTTTTTT
GTATATCTTTATACTTGGGTATGCGGCAACTGTGGGGAAGCTACGTGCAG
GCACCTTTGGCCGGAACTCCTTGTTCGCTTGCATGTATGTCTCGGGCTTC
CCTCTACGCGCTGGTGCTCCCTCACTGTTTTTCCCCTTGCTCTACGTTTA
CATTTTTCAATTACAGCAATATTCAGCTTTCTTCCGACTATCGACGCCAC
CGCCCTCACCGTATCAACACTGGCAGTAACGACGAAACAACAGCCAGCGA
AATGACCACCAACATTCAGCAGACAATGGGGCAGATGGGGCAGTTCGTGG
AACGTGGTGTGAAGCAACTGGTACCCTCAGAAATGGAGCACACAGTGGAC
GAGGGCCAGGCCATTTTGGGGCGCTACCTGAACATGCCCTTCGCATTTAG
CATGGAACAAGAGATCCGTAAGGCTCGCAACATTTGCAAGAACCTCAAGG
ACTTCCCTGCCTACCTCGACGGCAAGCTGGTATCCTCTCAAATCAAGCAG
GCCGACGCGGTGGTATTCTTAACGAATGCCCGTGCGGGCATCTTTATGAC
GGGCCACGTCGGGTCTGGCTTGGTAGTGGCACGCAACTCGGACGGGTCCT
GGTCGGCGCCCTCAGCCGTCTTCTACCTTGGCTCGGGTATGGGCCTGCAA
GGCGGCGCAGATGTGACGGACTACGTGGTCATTCTGAAGCGCCAAGCTGT
GGACTCCTTCGCGGGTAACAACCAGCTGGTCTTGGGCGGCGACGTCGGCG
CGACATTTTGGATGGGGCGTCACGGCACGGCTGAGCTCCATATTGGAAAG
CGGACCGGTATGGCATTGGGCTGGGCGGCGAGCAAAGGGTTTTTTGCAGG
CGCAGCGGCCACAGCTGGCTATCTTTGCACTCGTGGTGGCATCAACAAGA
AATTTTACGGCCGTGAAGTGGACCCCTGTGACCTGCTCCACGGGAAGATC
AGCAAGCCTCGAGCCGCCAAGCCCCTGTACGAGGCCCTCAACGACTTGCC
GTAA
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Synonyms
Publications