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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr3 | genome | chr3:1470667..1474159 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05180.1 vs.
Match: XP_004989675.1 (UDP-glucose 4-epimerase [Salpingoeca rosetta]; EGD78352.1 UDP-glucose 4-epimerase [Salpingoeca rosetta]) HSP 1 Score: 428.3 bits (1100), Expect = 2.500e-116 Identity = 213/344 (61.92%), Postives = 259/344 (75.29%), Query Frame = 0
Query: 41 ILVTGGAGYIGSHTVLLLLEAGYEVVVVDNMVNSCEESLRRVGELTGKAEKITFCKTDLLDKGGLEHVFLTYGRFRACIHFAGLKAVGESVAKPLLYYENNLTGTLNLLDAMQRHGCKIIVFSSSATVYGSAES-PVVEEQTVGQGITNPYGQTKYFIEKFLEDFQRSPEGKSWKVVILRYFNPVGSHESGRIGEDPSGTPNNLMPYVSQVAVGRRPQLTVFGGNYKTKDGTGVRDYIHVMDLAEGHLSALDYAKARGHHGGCFVFNLGTGKGYSVLEMIAAMEKASGRKINFVVGDRRPGDLDEVYSDPSKAERELGWKATRNLDDMTRDLWRWQQQNPHGYK 384
+LVTGGAGYIGSHTV+ L+ AGY+VV+VDN+VNSC+E++ RV EL GK ITF + DL+DK LE VF + F IHFAGLKAVGES PL YY NN+TGTL LL+ MQ HG K +VFSSSATVYG + P+ EE VG G TNPYG+TKYFIE+ DF + W +V+LRYFNP+G+H+SGRIGEDP G PNNL+PY++QVAVGRR Q+ VFG +Y T DGTGVRDYIHV+DLA GH+++L K GC V+NLGTGK SVLEMIAA KASG++I + +G RRPGD+ Y+DPSKAERELGWKATR +++ D WRWQ NP+G+K
Sbjct: 5 VLVTGGAGYIGSHTVIELISAGYDVVIVDNLVNSCKEAVDRVSELVGKP--ITFYEVDLMDKVALEDVFKKH-EFWGVIHFAGLKAVGESTKIPLKYYHNNITGTLILLEVMQAHGVKNLVFSSSATVYGDPQRLPIDEEHPVG-GCTNPYGKTKYFIEEICRDFALA--NADWNIVLLRYFNPIGAHKSGRIGEDPQGIPNNLLPYIAQVAVGRREQVNVFGNDYNTPDGTGVRDYIHVVDLALGHVASL---KRLDQGCGCAVYNLGTGKPASVLEMIAAFSKASGKEIKYEIGPRRPGDIASCYADPSKAERELGWKATRTVEEGCEDSWRWQSANPYGFK 339
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05180.1 ID=NO03G05180.1|Name=NO03G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1973bp
CATACACAGGAAAGCCGTCGCGTCTTTGACCTTCCTGCACTGCTGCGAGC
GTCTCGCCGTCCGCCACCGCTTTTTGTATCCCGAGCGCCGCGCACATACA
CGCTAATTGTAACGTTCGTTTGGCGATCGCACTCACTTCTACAATCACCT
CTAGCAGAAGACAATGGAGAGCTTGGGACGTTACGCGGCGCCTTTATTCA
TGGGAGCATCGCTGCTGTATGCATTGGGCCAGAAACACCGTCGGGATGTG
ACGAAGGAGCGACAGGAGGGAGCTCACAACCGCATCCTGGTCACGGGTGG
CGCTGGCTATATAGGGAGCCACACCGTCCTCCTCCTCCTGGAAGCCGGGT
ACGAGGTGGTGGTGGTAGATAATATGGTAAACTCATGCGAGGAGTCCTTG
CGTCGCGTGGGCGAGCTGACAGGAAAGGCAGAGAAAATCACGTTTTGCAA
GACCGATCTTCTCGACAAGGGCGGGCTGGAGCATGTCTTCCTCACCTACG
GTCGTTTCCGCGCCTGCATCCACTTCGCCGGTCTCAAAGCCGTTGGGGAG
AGTGTGGCAAAACCGTTATTGTACTACGAGAACAACTTGACGGGCACGTT
AAATTTATTGGACGCCATGCAGAGGCATGGGTGCAAAATTATTGTCTTCT
CCTCCTCTGCTACCGTATACGGGTCTGCGGAGAGCCCTGTGGTGGAGGAG
CAGACGGTGGGGCAGGGTATCACCAACCCGTATGGACAGACCAAGTACTT
TATCGAGAAGTTCCTCGAAGACTTTCAACGTTCCCCCGAAGGCAAGAGCT
GGAAGGTGGTCATACTCCGCTACTTCAACCCCGTCGGCTCCCACGAGAGC
GGCCGCATCGGCGAAGACCCCTCCGGCACGCCCAACAACCTGATGCCCTA
CGTCTCCCAGGTCGCCGTCGGACGCCGGCCGCAGCTGACCGTCTTCGGCG
GCAACTACAAGACCAAGGACGGTACAGGTGTACGTGATTATATCCACGTC
ATGGATCTGGCGGAAGGGCATCTGTCGGCCCTGGACTACGCCAAGGCGCG
CGGACACCACGGCGGCTGCTTTGTCTTCAACCTGGGCACTGGCAAGGGAT
ATAGTGTGCTGGAGATGATTGCCGCGATGGAAAAGGCCTCGGGGAGGAAG
ATCAATTTCGTGGTCGGGGACAGGCGGCCGGGAGACCTCGACGAGGTCTA
CTCTGACCCTAGCAAGGCGGAGCGCGAGCTCGGATGGAAGGCTACCCGGA
ACTTGGATGATATGACGAGGGATTTGTGGCGGTGGCAGCAGCAGAACCCG
CATGGGTATAAGTGATGAGCAGGGAGGGAAGGGAGGGGGTGGACTGTATG
CGTTATGCTGTGGGAAAGAGGTGAATCCGAGGGTGACAAGAACGAGGCGG
GAAGGAGGGAAGGAGAGAAGGAAGAGAAAGACTGTATGCATGTGCGTGTG
CTGTGGCGAAAAATATGAGGAATCGCAAAGGACGACCGGGCGGGCCATAA
GCGAGTAGATGCGAGGAAGGAGCAAGCAAGAAGTGAGTAGATGGGAGGGA
AGAACCAGGTATCGTCATCACTGCTGAAGGGACTAGCTGGTAACGGGCCA
TGGGGGTGCACGGGATCGACGGGAACGGTGGTGTGGGGAGAGGAAAAGAG
AGAAAGTTCATTGATGCAACTCAAAGCAGAGAGATGAAGGAGTAGGAGGA
GGATTTTATGCCCTTATAGCAGGGATCGGGAGAATGGGGATTTTATGCAA
TGAAACTACCACCAGCAGCAGATGCAGCAGCACTAACAGCAGATGCAGCA
GCAGCATCAGCTGCTCCAGCACCAGCAGCATCAGCATCAGCACGGCGATC
GAAAGAAGAGGTCAGCTTCTCACATACATGCATATCAAAGACACGAATCT
TGTCCAATACAAGCTATCGAAGAAGGGAAGAAAAAAGAAAGAATGAACAA
GAGCAATGGGTCGTAGAATGGAG back to topprotein sequence of NO03G05180.1 >NO03G05180.1-protein ID=NO03G05180.1-protein|Name=NO03G05180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MESLGRYAAPLFMGASLLYALGQKHRRDVTKERQEGAHNRILVTGGAGYI
GSHTVLLLLEAGYEVVVVDNMVNSCEESLRRVGELTGKAEKITFCKTDLL
DKGGLEHVFLTYGRFRACIHFAGLKAVGESVAKPLLYYENNLTGTLNLLD
AMQRHGCKIIVFSSSATVYGSAESPVVEEQTVGQGITNPYGQTKYFIEKF
LEDFQRSPEGKSWKVVILRYFNPVGSHESGRIGEDPSGTPNNLMPYVSQV
AVGRRPQLTVFGGNYKTKDGTGVRDYIHVMDLAEGHLSALDYAKARGHHG
GCFVFNLGTGKGYSVLEMIAAMEKASGRKINFVVGDRRPGDLDEVYSDPS
KAERELGWKATRNLDDMTRDLWRWQQQNPHGYK* back to topmRNA from alignment at chr3:1470667..1474159- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05180.1 ID=NO03G05180.1|Name=NO03G05180.1|organism=Nannochloropsis oceanica|type=mRNA|length=3493bp|location=Sequence derived from alignment at chr3:1470667..1474159- (Nannochloropsis oceanica)
CATACACAGGAAAGCCGTCGCGTCTTTGACCTTCCTGCACTGCTGCGAGC
GTCTCGCCGTCCGCCACCGCTTTTTGTATCCCGAGCGCCGCGCACATACA
CGCTAATTGTAACGTTCGTTTGGCGATCGCACTCACTTCTACAATCACCT
CTAGCAGAAGACAATGGAGAGCTTGGGACGTTACGCGGCGCCTTTATTCA
TGGGAGCATCGCTGCTGTATGCATTGGGCCAGAAACACCGTCGGGATGTG
ACGAAGGAGCGACAGGAGGGAGCTCACAACCGGTGTGTAGATGGGGAAAA
GGGGAGGGAGGGGTGGAAGGGTTACCTTGCGGAAGACTCGGGACCCTCGG
GGGCGTGTCCTTGATGGACTCGGCAAGATGGTGATGGCCGAAAAGTAATG
ACATTAGCCATACCTTTGCAATTAATAGTTGGAAGGACATGATGAACTGG
AAACATGGATGGGTGGTAGGCATGGAAGGCCATACCTTTGCAATTAATAG
TTGGAAGGACATGATGAACTGGAAACATGGATGGGTGGTAGGCATGGAAG
GCCAGAGGGGCACGCACGGACTGTTGCGATGGACGCACTGCATGTCCACG
CCTTCCCCCAGCCGGCTCTTCATCCTCCTCACCACTTTCCCACCTCCCTC
CCTTCTTTCCTCCCTCCAACTCAGCATCCTGGTCACGGGTGGCGCTGGCT
ATATAGGGAGCCACACCGTCCTCCTCCTCCTGGAAGCCGGGTACGAGGTG
GTGGTGGTAGATAATATGGTAAACTCATGCGAGGAGTCCTTGCGTCGCGT
GGGCGAGCTGACAGGAAAGGCAGAGAAAATCACGTTTTGCAAGGTGAAGA
AACAGAGGGGCGGGGCAGGGAATGATGAATGTCTTGATTTAAAAAAGCCT
TGGAGAGGGGGAAGGAAAAAGCATGTTGCAGGCCCTTGCATCGTCGGACG
TACCCTTCCAATGTAACGAGGTACAACGCTCTTCCTTCCTCCTTTCTTCC
CTCGCTTGCATTCTCCCTCAATCAGACCGATCTTCTCGACAAGGGCGGGC
TGGAGCATGTCTTCCTCACCTACGGTCGTTTCCGCGCCTGCATCCACTTC
GCCGGTCTCAAAGCCGTTGGGGAGAGTGTGGCAAAACCGTTATTGTACTA
CGAGAACAACTTGACGGGCACGTTAAATTTATTGGACGCCATGCAGAGGC
ATGGGTGCAAAATTATTGGTAGGGAGGGAGGGAGGGAGACAGACAGACAG
ACAAGGGAAGCGGGGTTCGTCTTGCCTCATCCGTCCCTCCCTCCCTCTCT
CCCTTCCTCCCTTCCTCTCTCCCTAGTCTTCTCCTCCTCTGCTACCGTAT
ACGGGTCTGCGGAGAGCCCTGTGGTGGAGGAGCAGACGGTGGGGCAGGGT
ATCACCAACCCGTATGGACAGACCAAGTACTTTATCGAGAAGTTCCTCGA
AGACTTTCAACGTTCCCCCGAAGGTGAGGAGGGGCGAGGGGGAGGGAGGG
AGGGAGGGAGGGATGTATGTATGTATTCGTCGTTACCATGGCCTGGCGTC
CCGTATCCTCGTCTTTCCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCCATAGGCAAGAGCTGGAAGGTGGTCATACT
CCGCTACTTCAACCCCGTCGGCTCCCACGAGAGCGGCCGCATCGGCGAAG
ACCCCTCCGGTAACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCA
CCCAATCCACCCCTCTGATCTCACCCTCTGCCCTCCCTTCCTCCCTCCCT
CCCACAATCCCTCCCTCCCTCAGGCACGCCCAACAACCTGATGCCCTACG
TCTCCCAGGTCGCCGTCGGACGCCGGCCGCAGCTGACCGTCTTCGGCGGT
GCGTCCTATCCCTCCCTCCCTCCCTCCCACCCTCCCTCTCCTTTTCTAAC
CCTCCCTCCCTCCGTCACTCCCTCCCTCCCTCCCTCCCTCCCAAGGCAAC
TACAAGACCAAGGACGGTACAGGTGTACGTGATTATATCCACGTCATGGA
TCTGGCGGTACGTTAAGGGAAGGAGGGAAGGAGGGAAGAGGGGAGGGAAG
GAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGA
GGGAAGGAGGGAGGGAGGGAGGGAAGACTACATCCACGTCATGGACCTGG
CGGTACACCAATAATAAACGAAAAACAGTGGAGGGAAGGAGGGAGGGAGG
GAGAAGAATCATTGATGCCCTTCTCCCGTCCCTCAGGAAGGCAAGATACT
AGAAGGTAAACGACCGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCTCAGGAAGGGCATCTGTCGGCCCTGGACTACGCCAAGGCGCGCGGA
CACCACGGCGGCTGCTTTGTCTTCAACCTGGGCACTGGCAAGGGATATAG
TGTGCTGGAGATGATTGCCGCGATGGAAAAGGCCTCGGGGAGGAAGATCA
ATTTCGTGGTCGGGGACAGGTAAGCCTTTCCTCCCTCCCTTCCTCCTCGG
CCTAGGGTTTATGGTGGGTGCTCCTGGAGAGTGAACAGATCAGGTTAAGG
TAAGGAATCTTTCTGAATGTATTTGCCACTCACCCCTCCCCCCCTCCCTT
TCTCTGTCCCTCCTTCCCTCCCCCCCCCCCCCGCTCTCCTCAGGCGGCCG
GGAGACCTCGACGAGGTCTACTCTGACCCTAGCAAGGCGGAGCGCGAGCT
CGGATGGAAGGCTACCCGGAACTTGGATGATATGACGAGGGATTTGTGGC
GGTGGCAGCAGCAGAACCCGCATGGGTATAAGTGATGAGCAGGGAGGGAA
GGGAGGGGGTGGACTGTATGCGTTATGCTGTGGGAAAGAGGTGAATCCGA
GGGTGACAAGAACGAGGCGGGAAGGAGGGAAGGAGAGAAGGAAGAGAAAG
ACTGTATGCATGTGCGTGTGCTGTGGCGAAAAATATGAGGAATCGCAAAG
GACGACCGGGCGGGCCATAAGCGAGTAGATGCGAGGAAGGAGCAAGCAAG
AAGTGAGTAGATGGGAGGGAAGAACCAGGTATCGTCATCACTGCTGAAGG
GACTAGCTGGTAACGGGCCATGGGGGTGCACGGGATCGACGGGAACGGTG
GTGTGGGGAGAGGAAAAGAGAGAAAGTTCATTGATGCAACTCAAAGCAGA
GAGATGAAGGAGTAGGAGGAGGATTTTATGCCCTTATAGCAGGGATCGGG
AGAATGGGGATTTTATGCAATGAAACTACCACCAGCAGCAGATGCAGCAG
CACTAACAGCAGATGCAGCAGCAGCATCAGCTGCTCCAGCACCAGCAGCA
TCAGCATCAGCACGGCGATCGAAAGAAGAGGTCAGCTTCTCACATACATG
CATATCAAAGACACGAATCTTGTCCAATACAAGCTATCGAAGAAGGGAAG
AAAAAAGAAAGAATGAACAAGAGCAATGGGTCGTAGAATGGAG back to topCoding sequence (CDS) from alignment at chr3:1470667..1474159- >NO03G05180.1 ID=NO03G05180.1|Name=NO03G05180.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr3:1470667..1474159- (Nannochloropsis oceanica)
ATGGAGAGCTTGGGACGTTACGCGGCGCCTTTATTCATGGGAGCATCGCT
GCTGTATGCATTGGGCCAGAAACACCGTCGGGATGTGACGAAGGAGCGAC
AGGAGGGAGCTCACAACCGCATCCTGGTCACGGGTGGCGCTGGCTATATA
GGGAGCCACACCGTCCTCCTCCTCCTGGAAGCCGGGTACGAGGTGGTGGT
GGTAGATAATATGGTAAACTCATGCGAGGAGTCCTTGCGTCGCGTGGGCG
AGCTGACAGGAAAGGCAGAGAAAATCACGTTTTGCAAGACCGATCTTCTC
GACAAGGGCGGGCTGGAGCATGTCTTCCTCACCTACGGTCGTTTCCGCGC
CTGCATCCACTTCGCCGGTCTCAAAGCCGTTGGGGAGAGTGTGGCAAAAC
CGTTATTGTACTACGAGAACAACTTGACGGGCACGTTAAATTTATTGGAC
GCCATGCAGAGGCATGGGTGCAAAATTATTGTCTTCTCCTCCTCTGCTAC
CGTATACGGGTCTGCGGAGAGCCCTGTGGTGGAGGAGCAGACGGTGGGGC
AGGGTATCACCAACCCGTATGGACAGACCAAGTACTTTATCGAGAAGTTC
CTCGAAGACTTTCAACGTTCCCCCGAAGGCAAGAGCTGGAAGGTGGTCAT
ACTCCGCTACTTCAACCCCGTCGGCTCCCACGAGAGCGGCCGCATCGGCG
AAGACCCCTCCGGCACGCCCAACAACCTGATGCCCTACGTCTCCCAGGTC
GCCGTCGGACGCCGGCCGCAGCTGACCGTCTTCGGCGGCAACTACAAGAC
CAAGGACGGTACAGGTGTACGTGATTATATCCACGTCATGGATCTGGCGG
AAGGGCATCTGTCGGCCCTGGACTACGCCAAGGCGCGCGGACACCACGGC
GGCTGCTTTGTCTTCAACCTGGGCACTGGCAAGGGATATAGTGTGCTGGA
GATGATTGCCGCGATGGAAAAGGCCTCGGGGAGGAAGATCAATTTCGTGG
TCGGGGACAGGCGGCCGGGAGACCTCGACGAGGTCTACTCTGACCCTAGC
AAGGCGGAGCGCGAGCTCGGATGGAAGGCTACCCGGAACTTGGATGATAT
GACGAGGGATTTGTGGCGGTGGCAGCAGCAGAACCCGCATGGGTATAAGT
GA back to top
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