NO03G05130.1, NO03G05130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05130.1
Unique NameNO03G05130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1994
Alignment locationchr3:1449269..1451444 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1449269..1451444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO03G05130.1 vs.
Match: EWM29945.1 (16s rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 421.8 bits (1083), Expect = 3.500e-114
Identity = 255/416 (61.30%), Postives = 288/416 (69.23%), Query Frame = 0 
Query:    2 ASTAPAAAVAARRFVLRVTTATLSLTACVAASLPHRTYPAFVPLGASPYGL--AAPHHPGKKQQYHQQQQHTFSTFGSSR----------RTPTPGRRAPVVAASSDDDDRSGRDPPTPPATSFPPVTVDSITRTAWPDLRPAQWKQIEALANLLVEVNAKINVISRKDIQNVVPNHILPALGLASLLRKAPKGTTVLDIGTGGGFPGLPLAIACPQLNLMLVDSTGKKVRAVAEMAEALQLKNVQTRHARIEDVQGQRFDFVVGRSVTAIPRFLAWARPKLKVPREAGGGGGEEEGEEGEGGKEKLEDEFGVPVPGVLYVTGLEPAPPSMKKGRREGGGRDGRMWADEVEKEEEEEEEEFQVFEPDYIYPITELLAPVYKGDKHVFHFSAAKLLSGKVYFAEEMGGRGGRREGGG 406
            AST P  A  AR FVL  TTATLSL ACV    P+R+YPAFV   A P GL  +  H       +  + QH     G             R     R      A+ ++ +  G D    P     P+ VD+ T+ AWPDLRPAQWKQIEALANLLVE+N KINVISRKDIQNV+PNHILPALGLA+LLRKAP GT+VLDIGTGGGFPGLPLAIACPQLNL+LVD+TGKK+RAVA M+  L LKNV T HARIE+VQGQRFD+VVGRSVTAIPRFL WA+PKLKVPR+ GG G E+ GE  E G   LEDEFGVPVPGVLYVTGLEP  PS K  R  GGG  GR   +  E  EEEEEEE     PD++YP+  LL PVY+GDKHVFHFSAA L+ G+V+  E  GGRGGRREG G
Sbjct:    6 ASTVPIKA--ARHFVLLATTATLSLAACVLNHRPYRSYPAFVSRSAPPRGLLGSIKHEQNIPDPFTTRCQHFVQFPGHIEGKDSHKDVHIRHKFACRSHAGSGANQENVNTGGTDLGGLPQA---PIVVDAKTKEAWPDLRPAQWKQIEALANLLVEINTKINVISRKDIQNVLPNHILPALGLATLLRKAPAGTSVLDIGTGGGFPGLPLAIACPQLNLLLVDATGKKIRAVAAMSARLNLKNVATLHARIEEVQGQRFDYVVGRSVTAIPRFLRWAQPKLKVPRQ-GGRGREKTGESEEKG--PLEDEFGVPVPGVLYVTGLEPT-PSTKMAR--GGGEGGREGGEGEEDGEEEEEEELAECVPDHVYPVQALLGPVYEGDKHVFHFSAAALVKGRVFVPEWEGGRGGRREGNG 410
The following BLAST results are available for this feature:
BLAST of NO03G05130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29945.13.500e-11461.3016s rrna methyltransferase [Nannochloropsis gadita... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05130NO03G05130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05130.1NO03G05130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05130.1.cds1NO03G05130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05130.1.cds2NO03G05130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05130.1 ID=NO03G05130.1|Name=NO03G05130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1994bp
GCTGTTTCAAGCAACTTCAACGCAACATCTGCCACCACCCACCGACCCAC
CTTACTCCTCCACTAGGCCTTTCCCAACTTTCCCAGCACTTGCTCTGTAG
GGTCCTCGCAGCCGTCGACGCCGCACCGCCCTTATGGGCATTTTTATAAT
TAACTGATCCGTTCTTATTCACCCACTCAACCTCAACCATTCGAAATCCG
AAACACAACACATATCAATACAGCCAAGTCATGGCGTCGACGGCCCCGGC
AGCAGCAGTAGCCGCCCGCCGCTTCGTCTTAAGAGTCACCACCGCCACGC
TCTCCTTGACGGCCTGTGTTGCGGCAAGCTTGCCGCATCGTACATACCCG
GCATTTGTGCCTCTGGGAGCCTCCCCCTACGGCTTGGCAGCGCCGCACCA
TCCTGGGAAGAAGCAGCAGTACCACCAGCAACAGCAGCACACCTTCAGCA
CGTTTGGCAGCAGTCGACGCACCCCTACACCCGGCCGTCGTGCTCCTGTG
GTTGCTGCAAGCTCTGACGATGATGACAGGAGCGGCAGGGATCCGCCTAC
CCCTCCTGCCACTTCTTTTCCCCCCGTTACCGTCGACTCAATCACTCGGA
CAGCGTGGCCTGACTTGCGGCCCGCCCAGTGGAAGCAGATTGAGGCATTG
GCTAACCTTCTCGTGGAGGTCAACGCCAAGATTAATGTGATCTCTCGCAA
GGATATTCAGAACGTGGTTCCTAATCACATCCTACCCGCCCTTGGCTTGG
CCTCCCTCTTGCGAAAGGCCCCAAAGGGCACTACGGTCCTCGATATCGGT
ACTGGTGGAGGGTTCCCGGGACTGCCCCTCGCCATTGCCTGCCCTCAGCT
CAACTTGATGCTGGTGGATTCGACGGGGAAAAAAGTCCGGGCGGTGGCGG
AGATGGCCGAGGCGCTGCAGTTGAAGAACGTCCAGACAAGACACGCGAGG
ATCGAGGATGTGCAAGGCCAACGGTTTGATTTTGTGGTGGGAAGGTCCGT
AACGGCCATCCCCCGTTTTTTGGCGTGGGCGCGCCCGAAGCTTAAGGTGC
CGAGGGAGGCGGGGGGAGGAGGAGGTGAAGAAGAAGGGGAGGAAGGGGAG
GGAGGGAAGGAGAAGTTGGAGGATGAATTTGGCGTGCCGGTGCCGGGGGT
GCTGTATGTAACAGGCCTGGAGCCAGCGCCCCCATCGATGAAGAAGGGGA
GGAGGGAGGGAGGGGGAAGGGATGGGAGAATGTGGGCGGATGAGGTGGAG
AAGGAGGAGGAGGAGGAGGAGGAGGAGTTTCAGGTGTTTGAGCCTGATTA
TATATATCCAATAACGGAGTTGCTAGCGCCGGTGTATAAAGGGGATAAGC
ACGTTTTTCATTTCTCGGCCGCCAAGCTCTTAAGCGGGAAAGTCTACTTC
GCTGAGGAGATGGGGGGAAGGGGAGGAAGGAGGGAGGGAGGAGGGGTGCG
GGCACGGACGATGTATGATGACAAAGGGGTGTTCCGCCCGGAGAAGGAAA
GGGACTTCAGGAAGGTGTTGAGGACAGTGGAGAGAGAGTTTGACAGGGGC
GAGGGAGGGGGGGAGGATAGGATAGGGGAGAGGAGAGAGGATGGAGAATT
GCGACCTTATGAGCGGAGGGGCAATGGATATGGTGGTGGAGGGCGAGGAG
GGGAACGGGGAGGAGAATATGGTGGAAGAGGAGGAAGAGGAGAAAGACAG
GGAGGGTACGGCGGTGGTAGAGGAGGAGGAAGAAGCGGCCATCTCAGTCG
CGAAGGTCGAGAAGGAGGAGGAGGAGGACGACGACGAAGGGATGGGCCTC
CAGGTCGTGGAGGAGGATGGGGGGGAGGGGATGGTGCTAGATTTGGAGAT
GGGGGCAGCGGCCGTGGTGATGGAGGAAGAAGAGGAAGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGGAG
GAGGCTCCTCGGTTCCTCGAGGACAAGACCCGCGATTTAAGTAA
back to top

protein sequence of NO03G05130.1

>NO03G05130.1-protein ID=NO03G05130.1-protein|Name=NO03G05130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MASTAPAAAVAARRFVLRVTTATLSLTACVAASLPHRTYPAFVPLGASPY
GLAAPHHPGKKQQYHQQQQHTFSTFGSSRRTPTPGRRAPVVAASSDDDDR
SGRDPPTPPATSFPPVTVDSITRTAWPDLRPAQWKQIEALANLLVEVNAK
INVISRKDIQNVVPNHILPALGLASLLRKAPKGTTVLDIGTGGGFPGLPL
AIACPQLNLMLVDSTGKKVRAVAEMAEALQLKNVQTRHARIEDVQGQRFD
FVVGRSVTAIPRFLAWARPKLKVPREAGGGGGEEEGEEGEGGKEKLEDEF
GVPVPGVLYVTGLEPAPPSMKKGRREGGGRDGRMWADEVEKEEEEEEEEF
QVFEPDYIYPITELLAPVYKGDKHVFHFSAAKLLSGKVYFAEEMGGRGGR
REGGGVRARTMYDDKGVFRPEKERDFRKVLRTVEREFDRGEGGGEDRIGE
RREDGELRPYERRGNGYGGGGRGGERGGEYGGRGGRGERQGGYGGGRGGG
RSGHLSREGREGGGGGRRRRDGPPGRGGGWGGGDGARFGDGGSGRGDGGR
RGRGGGGGGGGGGGGGGGGGGRGGGSSVPRGQDPRFK*
back to top

mRNA from alignment at chr3:1449269..1451444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05130.1 ID=NO03G05130.1|Name=NO03G05130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp|location=Sequence derived from alignment at chr3:1449269..1451444- (Nannochloropsis oceanica)
GCTGTTTCAAGCAACTTCAACGCAACATCTGCCACCACCCACCGACCCAC
CTTACTCCTCCACTAGGCCTTTCCCAACTTTCCCAGCACTTGCTCTGTAG
GGTCCTCGCAGCCGTCGACGCCGCACCGCCCTTATGGGCATTTTTATAAT
TAACTGATCCGTTCTTATTCACCCACTCAACCTCAACCATTCGAAATCCG
AAACACAACACATATCAATACAGCCAAGTCATGGCGTCGACGGCCCCGGC
AGCAGCAGTAGCCGCCCGCCGCTTCGTCTTAAGAGTCACCACCGCCACGC
TCTCCTTGACGGCCTGTGTTGCGGCAAGCTTGCCGCATCGTACATACCCG
GCATTTGTGCCTCTGGGAGCCTCCCCCTACGGCTTGGCAGCGCCGCACCA
TCCTGGGAAGAAGCAGCAGTACCACCAGCAACAGCAGCACACCTTCAGCA
CGTTTGGCAGCAGTCGACGCACCCCTACACCCGGCCGTCGTGCTCCTGTG
GTTGCTGCAAGCTCTGACGATGATGACAGGAGCGGCAGGGATCCGCCTAC
CCCTCCTGCCACTTCTTTTCCCCCCGTTACCGTCGACTCAATCACTCGGA
CAGCGTGGCCTGACTTGCGGCCCGCCCAGTGGAAGCAGATTGAGGCATTG
GCTAACCTTCTCGTGGAGGTCAACGCCAAGATTAATGTGATCTCTCGCAA
GGATATTCAGGTACTTACCGCATCCCGATAGGCTGATTAGAATTGGCTTC
AGGAACTTCATCCCTTTATTCCCTCCTGCATCGTAACATAGACCTTGCGA
TCGGTGCACTCCCGACTTCGCGACATTCACCAATGCAACACTTAGCCATC
CTTCCCTCCTATCCTCCCGCCTCTTTCCGTCCCTTATCCTAGAACGTGGT
TCCTAATCACATCCTACCCGCCCTTGGCTTGGCCTCCCTCTTGCGAAAGG
CCCCAAAGGGCACTACGGTCCTCGATATCGGTACTGGTGGAGGGTTCCCG
GGACTGCCCCTCGCCATTGCCTGCCCTCAGCTCAACTTGATGCTGGTGGA
TTCGACGGGGAAAAAAGTCCGGGCGGTGGCGGAGATGGCCGAGGCGCTGC
AGTTGAAGAACGTCCAGACAAGACACGCGAGGATCGAGGATGTGCAAGGC
CAACGGTTTGATTTTGTGGTGGGAAGGTCCGTAACGGCCATCCCCCGTTT
TTTGGCGTGGGCGCGCCCGAAGCTTAAGGTGCCGAGGGAGGCGGGGGGAG
GAGGAGGTGAAGAAGAAGGGGAGGAAGGGGAGGGAGGGAAGGAGAAGTTG
GAGGATGAATTTGGCGTGCCGGTGCCGGGGGTGCTGTATGTAACAGGCCT
GGAGCCAGCGCCCCCATCGATGAAGAAGGGGAGGAGGGAGGGAGGGGGAA
GGGATGGGAGAATGTGGGCGGATGAGGTGGAGAAGGAGGAGGAGGAGGAG
GAGGAGGAGTTTCAGGTGTTTGAGCCTGATTATATATATCCAATAACGGA
GTTGCTAGCGCCGGTGTATAAAGGGGATAAGCACGTTTTTCATTTCTCGG
CCGCCAAGCTCTTAAGCGGGAAAGTCTACTTCGCTGAGGAGATGGGGGGA
AGGGGAGGAAGGAGGGAGGGAGGAGGGGTGCGGGCACGGACGATGTATGA
TGACAAAGGGGTGTTCCGCCCGGAGAAGGAAAGGGACTTCAGGAAGGTGT
TGAGGACAGTGGAGAGAGAGTTTGACAGGGGCGAGGGAGGGGGGGAGGAT
AGGATAGGGGAGAGGAGAGAGGATGGAGAATTGCGACCTTATGAGCGGAG
GGGCAATGGATATGGTGGTGGAGGGCGAGGAGGGGAACGGGGAGGAGAAT
ATGGTGGAAGAGGAGGAAGAGGAGAAAGACAGGGAGGGTACGGCGGTGGT
AGAGGAGGAGGAAGAAGCGGCCATCTCAGTCGCGAAGGTCGAGAAGGAGG
AGGAGGAGGACGACGACGAAGGGATGGGCCTCCAGGTCGTGGAGGAGGAT
GGGGGGGAGGGGATGGTGCTAGATTTGGAGATGGGGGCAGCGGCCGTGGT
GATGGAGGAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGCTCCTCGGTTCCTC
GAGGACAAGACCCGCGATTTAAGTAA
back to top

Coding sequence (CDS) from alignment at chr3:1449269..1451444-

>NO03G05130.1 ID=NO03G05130.1|Name=NO03G05130.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr3:1449269..1451444- (Nannochloropsis oceanica)
ATGGCGTCGACGGCCCCGGCAGCAGCAGTAGCCGCCCGCCGCTTCGTCTT
AAGAGTCACCACCGCCACGCTCTCCTTGACGGCCTGTGTTGCGGCAAGCT
TGCCGCATCGTACATACCCGGCATTTGTGCCTCTGGGAGCCTCCCCCTAC
GGCTTGGCAGCGCCGCACCATCCTGGGAAGAAGCAGCAGTACCACCAGCA
ACAGCAGCACACCTTCAGCACGTTTGGCAGCAGTCGACGCACCCCTACAC
CCGGCCGTCGTGCTCCTGTGGTTGCTGCAAGCTCTGACGATGATGACAGG
AGCGGCAGGGATCCGCCTACCCCTCCTGCCACTTCTTTTCCCCCCGTTAC
CGTCGACTCAATCACTCGGACAGCGTGGCCTGACTTGCGGCCCGCCCAGT
GGAAGCAGATTGAGGCATTGGCTAACCTTCTCGTGGAGGTCAACGCCAAG
ATTAATGTGATCTCTCGCAAGGATATTCAGAACGTGGTTCCTAATCACAT
CCTACCCGCCCTTGGCTTGGCCTCCCTCTTGCGAAAGGCCCCAAAGGGCA
CTACGGTCCTCGATATCGGTACTGGTGGAGGGTTCCCGGGACTGCCCCTC
GCCATTGCCTGCCCTCAGCTCAACTTGATGCTGGTGGATTCGACGGGGAA
AAAAGTCCGGGCGGTGGCGGAGATGGCCGAGGCGCTGCAGTTGAAGAACG
TCCAGACAAGACACGCGAGGATCGAGGATGTGCAAGGCCAACGGTTTGAT
TTTGTGGTGGGAAGGTCCGTAACGGCCATCCCCCGTTTTTTGGCGTGGGC
GCGCCCGAAGCTTAAGGTGCCGAGGGAGGCGGGGGGAGGAGGAGGTGAAG
AAGAAGGGGAGGAAGGGGAGGGAGGGAAGGAGAAGTTGGAGGATGAATTT
GGCGTGCCGGTGCCGGGGGTGCTGTATGTAACAGGCCTGGAGCCAGCGCC
CCCATCGATGAAGAAGGGGAGGAGGGAGGGAGGGGGAAGGGATGGGAGAA
TGTGGGCGGATGAGGTGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGTTT
CAGGTGTTTGAGCCTGATTATATATATCCAATAACGGAGTTGCTAGCGCC
GGTGTATAAAGGGGATAAGCACGTTTTTCATTTCTCGGCCGCCAAGCTCT
TAAGCGGGAAAGTCTACTTCGCTGAGGAGATGGGGGGAAGGGGAGGAAGG
AGGGAGGGAGGAGGGGTGCGGGCACGGACGATGTATGATGACAAAGGGGT
GTTCCGCCCGGAGAAGGAAAGGGACTTCAGGAAGGTGTTGAGGACAGTGG
AGAGAGAGTTTGACAGGGGCGAGGGAGGGGGGGAGGATAGGATAGGGGAG
AGGAGAGAGGATGGAGAATTGCGACCTTATGAGCGGAGGGGCAATGGATA
TGGTGGTGGAGGGCGAGGAGGGGAACGGGGAGGAGAATATGGTGGAAGAG
GAGGAAGAGGAGAAAGACAGGGAGGGTACGGCGGTGGTAGAGGAGGAGGA
AGAAGCGGCCATCTCAGTCGCGAAGGTCGAGAAGGAGGAGGAGGAGGACG
ACGACGAAGGGATGGGCCTCCAGGTCGTGGAGGAGGATGGGGGGGAGGGG
ATGGTGCTAGATTTGGAGATGGGGGCAGCGGCCGTGGTGATGGAGGAAGA
AGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGGGGAGGAGGCTCCTCGGTTCCTCGAGGACAAGACC
CGCGATTTAAGTAA
back to top
Synonyms
Publications