NO03G05120.1, NO03G05120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05120.1
Unique NameNO03G05120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1693
Alignment locationchr3:1446910..1448891 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1446910..1448891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05120.1 vs.
Match: EWM29948.1 (hypothetical protein Naga_100247g4 [Nannochloropsis gaditana])

HSP 1 Score: 505.4 bits (1300), Expect = 1.900e-139
Identity = 278/429 (64.80%), Postives = 323/429 (75.29%), Query Frame = 0 
Query:   34 TALCLTVVLLLIATPPI--QSTKQPLSFSILPRLFRRQVRSQIFTTSSSSASIFPRLFTRRAGSTIVSSSTDLPSSAPDNIQPASPSAPVADLGFSFSPAGLLFPYHLGVASVLREKRLLNDKVPLGGSSAGALVAALIGADIPIKKALDACHTINDQWSGAMSFTKGITESL-NFDFGGGSGLDKTHEEAVAVALAAGVGLPPPVVKSART-----GNSKTLKALLHEVLDEILPQDAHLRLNARAGKVTIGVTELGWSGFRANFFLRPRAFSSFTSREDLIEVLLASCNVPILFSGFPSLSCRGLPSIDGYFSVPPHRFGCPYLPEAERTVLVSPFPASAVERGPGPTEEERRGREWLSPEVRRAEEGEEGGGTMRELLKDAWSVNGREVVEKYYEMGRRDAAVWVQTSGFVKRRKGGGGLGLMLSF 455
            T L  ++VL++ A P +   +T+  LSFSILPRLF R+        + SS  + P      + S+   ++T LP++  +   P     P ++LGFSFSPAGLLFPYHLGVASVLREKRL+ D+VPLGGSSAGALVA LIG+DI +KKALDACHTIN+QWSGAMSFT  ITE+L NFDFGGG+    +HEEAVA ALAAGV LPP +  S  T        +TLKALL EVLD++LP DAH RLNAR GKVT+GVT LGWSGFRANFFLRPRA SSF SR DLIEVLLASCNVP+LF+G+PSL CRGLPSIDGYFSVP HRFGCPYL  A RT+LVSPFPA+AV RGPGPT EE  GREWLSPEV     GE G   MRELL+DAWSVNGREVVE+YYE+GRRDA  WV  S +++R+  GGG GLM+ F
Sbjct:   16 TRLATSIVLIVSACPAVITDATRATLSFSILPRLFARR--------AGSSNGLHPL----SSPSSATPTTTSLPATEINAPFPPPSEFPTSELGFSFSPAGLLFPYHLGVASVLREKRLITDQVPLGGSSAGALVAVLIGSDISMKKALDACHTINNQWSGAMSFTGVITENLFNFDFGGGAA--DSHEEAVAAALAAGVTLPPSLPPSYSTRLTNINGRRTLKALLEEVLDQVLPPDAHERLNARPGKVTVGVTNLGWSGFRANFFLRPRAISSFASRADLIEVLLASCNVPVLFAGYPSLPCRGLPSIDGYFSVPAHRFGCPYLAGAARTILVSPFPATAVMRGPGPTAEEEGGREWLSPEVEEG-WGEGGRKGMRELLRDAWSVNGREVVERYYELGRRDAQAWVDKSEYMRRKLKGGG-GLMIPF 428
The following BLAST results are available for this feature:
BLAST of NO03G05120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29948.11.900e-13964.80hypothetical protein Naga_100247g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05120NO03G05120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05120.1NO03G05120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05120.1.cds1NO03G05120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05120.1.cds2NO03G05120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05120.1 ID=NO03G05120.1|Name=NO03G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1693bp
ACAACAGGCCTTTGTACCAGGACGCTGCGTCGCTGCGGCTTCCTGTACAG
CCATCGAATGGGTTCGCGAGAAAGACGTAGGCAGCTACCATCCCTGACAC
CCCTGGAAGACGGGGCTGGTGACCATAACAGAAGAAAAAGGGTGACCACC
ACCACCACTGCACTCTGTCTCACCGTTGTCCTTCTCCTCATTGCCACGCC
CCCCATCCAATCCACCAAGCAGCCCTTGTCCTTTTCTATCCTCCCCCGAC
TTTTCAGAAGACAAGTACGCTCTCAAATTTTTACCACCTCCTCCTCCTCC
GCCAGCATCTTTCCCCGCCTCTTCACCAGACGCGCTGGTTCAACCATCGT
CTCCTCCAGCACTGACCTTCCATCAAGCGCACCCGACAATATCCAACCAG
CATCCCCCTCCGCACCCGTCGCCGATCTCGGCTTCTCCTTCAGTCCCGCC
GGTCTGCTTTTCCCCTACCACCTGGGCGTCGCCTCCGTGCTACGAGAGAA
GCGCTTGCTCAATGACAAAGTCCCCTTGGGTGGTTCCAGTGCCGGTGCCC
TCGTCGCGGCTCTGATCGGTGCGGATATCCCCATCAAGAAAGCCCTGGAC
GCATGCCACACCATCAATGACCAATGGAGTGGTGCCATGTCTTTCACTAA
AGGAATCACGGAGAGTCTAAATTTTGATTTTGGGGGCGGTTCTGGCTTAG
ACAAGACCCACGAGGAAGCTGTGGCGGTAGCACTAGCTGCGGGCGTCGGG
CTTCCGCCTCCGGTCGTGAAGAGTGCGAGGACTGGGAATAGCAAGACGTT
GAAGGCTTTGTTGCACGAGGTGTTGGATGAGATCTTGCCGCAAGATGCGC
ACTTAAGGTTGAATGCGAGGGCAGGAAAGGTCACAATTGGCGTGACAGAA
CTTGGGTGGTCGGGATTTCGCGCCAATTTTTTCCTCCGCCCCCGGGCCTT
CTCCTCCTTCACCTCCCGGGAAGACCTCATCGAAGTCCTCCTCGCCTCGT
GCAATGTCCCCATCCTCTTCTCGGGCTTTCCATCCCTGTCGTGTCGAGGC
CTGCCTTCCATCGACGGGTATTTCTCCGTCCCGCCCCATCGGTTTGGATG
CCCCTACCTGCCCGAAGCGGAGAGAACAGTGCTGGTGTCGCCGTTTCCGG
CCTCGGCTGTGGAACGGGGTCCCGGGCCGACGGAGGAGGAGAGGAGGGGA
AGGGAGTGGCTGTCTCCCGAGGTGAGGAGAGCGGAGGAAGGGGAGGAGGG
AGGAGGGACGATGCGGGAGTTGTTGAAGGACGCCTGGTCTGTGAATGGGC
GGGAGGTGGTGGAGAAGTATTATGAGATGGGGCGGCGAGATGCAGCTGTG
TGGGTGCAGACAAGTGGGTTTGTCAAGAGGAGGAAGGGGGGAGGGGGGCT
GGGACTGATGTTGTCCTTCTTTTGAGAGGCGGGAGGAGGGAGGGAGGGAG
AACCGGTAGATACATATTTATATATATATATATATATACATATTTATATA
TATATTGGGAGAGGTAGCGCAGTCAAGCGGCGGTAGAGCATGTAACAAAA
ATGCAAATTAATCTGTGAAGTGGTCAACAACCGTATCGGTATCGAGGAAT
AAAATCCAGAAATGAGATCAGACAAATGAAGAAACAATAGAAACAAGCAT
AGATAGTAATTTTAATCAATCAGGCATGTCATATTGCTACGAG
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protein sequence of NO03G05120.1

>NO03G05120.1-protein ID=NO03G05120.1-protein|Name=NO03G05120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MGSRERRRQLPSLTPLEDGAGDHNRRKRVTTTTTALCLTVVLLLIATPPI
QSTKQPLSFSILPRLFRRQVRSQIFTTSSSSASIFPRLFTRRAGSTIVSS
STDLPSSAPDNIQPASPSAPVADLGFSFSPAGLLFPYHLGVASVLREKRL
LNDKVPLGGSSAGALVAALIGADIPIKKALDACHTINDQWSGAMSFTKGI
TESLNFDFGGGSGLDKTHEEAVAVALAAGVGLPPPVVKSARTGNSKTLKA
LLHEVLDEILPQDAHLRLNARAGKVTIGVTELGWSGFRANFFLRPRAFSS
FTSREDLIEVLLASCNVPILFSGFPSLSCRGLPSIDGYFSVPPHRFGCPY
LPEAERTVLVSPFPASAVERGPGPTEEERRGREWLSPEVRRAEEGEEGGG
TMRELLKDAWSVNGREVVEKYYEMGRRDAAVWVQTSGFVKRRKGGGGLGL
MLSFF*
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mRNA from alignment at chr3:1446910..1448891+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05120.1 ID=NO03G05120.1|Name=NO03G05120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1982bp|location=Sequence derived from alignment at chr3:1446910..1448891+ (Nannochloropsis oceanica)
ACAACAGGCCTTTGTACCAGGACGCTGCGTCGCTGCGGCTTCCTGTACAG
CCATCGAATGGGTTCGCGAGAAAGACGTAGGCAGCTACCATCCCTGACAC
CCCTGGAAGACGGGGCTGGTGACCATAACAGAAGAAAAAGGGTGACCACC
ACCACCACTGCACTCTGTCTCACCGTTGTCCTTCTCCTCATTGCCACGCC
CCCCATCCAATCCACCAAGCAGCCCTTGTCCTTTTCTATCCTCCCCCGAC
TTTTCAGAAGACAAGTACGCTCTCAAATTTTTACCACCTCCTCCTCCTCC
GCCAGCATCTTTCCCCGCCTCTTCACCAGACGCGCTGGTTCAACCATCGT
CTCCTCCAGCACTGACCTTCCATCAAGCGCACCCGACAATATCCAACCAG
CATCCCCCTCCGCACCCGTCGCCGATCTCGGCTTCTCCTTCAGTCCCGCC
GGTCTGCTTTTCCCCTACCACCTGGGCGTCGCCTCCGTGCTACGAGAGAA
GCGCTTGCTCAATGACAAAGTCCCCTTGGGTGGTTCCAGTGCCGGTGCCC
TCGTCGCGGCTCTGATCGGTGCGGATATCCCCATCAAGAAAGCCCTGGAC
GCATGCCACACCATCAATGACCAATGGAGTGGTGCCATGTCTTTCACTAA
AGGAATCACGGAGAGTCTAAATTTTGATTTTGGGGGCGGTTCTGGCTTAG
ACAAGACCCACGAGGAAGCTGTGGCGGTAGCACTAGCTGCGGGCGTCGGG
CTTCCGCCTCCGGTCGTGAAGAGTGCGAGGACTGGGAATAGCAAGACGTT
GAAGGCTTTGTTGCACGAGGTGTTGGATGAGATCTTGCCGCAAGATGCGC
ACTTAAGGTTGAATGCGAGGGCAGGAAAGGTACGAGTGAGGGGAGAGGGG
AAGAGATGAGGATGAGGACGGGAGGCGAGGGAGAAAGAGGAAAGGAGGTG
AGAGGTGATGTGTCTGTGGCTGTCCAAAGGGGCGCATTGACCATGGAAAG
AGTGCGATGCGGCAGCAGATGATAGGAGCCACTGTGTGAATATGCGTGAG
CCATTTCTCATACACTTCTATGTATACCCTTTTATTCACACCCCTCTCCT
TTTATAGTAACCCTCTTATTCACATGGCTCCCCTTCCTCCTTCCTCTTCT
TCCCCCTTCCTCCTTCAGGTCACAATTGGCGTGACAGAACTTGGGTGGTC
GGGATTTCGCGCCAATTTTTTCCTCCGCCCCCGGGCCTTCTCCTCCTTCA
CCTCCCGGGAAGACCTCATCGAAGTCCTCCTCGCCTCGTGCAATGTCCCC
ATCCTCTTCTCGGGCTTTCCATCCCTGTCGTGTCGAGGCCTGCCTTCCAT
CGACGGGTATTTCTCCGTCCCGCCCCATCGGTTTGGATGCCCCTACCTGC
CCGAAGCGGAGAGAACAGTGCTGGTGTCGCCGTTTCCGGCCTCGGCTGTG
GAACGGGGTCCCGGGCCGACGGAGGAGGAGAGGAGGGGAAGGGAGTGGCT
GTCTCCCGAGGTGAGGAGAGCGGAGGAAGGGGAGGAGGGAGGAGGGACGA
TGCGGGAGTTGTTGAAGGACGCCTGGTCTGTGAATGGGCGGGAGGTGGTG
GAGAAGTATTATGAGATGGGGCGGCGAGATGCAGCTGTGTGGGTGCAGAC
AAGTGGGTTTGTCAAGAGGAGGAAGGGGGGAGGGGGGCTGGGACTGATGT
TGTCCTTCTTTTGAGAGGCGGGAGGAGGGAGGGAGGGAGAACCGGTAGAT
ACATATTTATATATATATATATATATACATATTTATATATATATTGGGAG
AGGTAGCGCAGTCAAGCGGCGGTAGAGCATGTAACAAAAATGCAAATTAA
TCTGTGAAGTGGTCAACAACCGTATCGGTATCGAGGAATAAAATCCAGAA
ATGAGATCAGACAAATGAAGAAACAATAGAAACAAGCATAGATAGTAATT
TTAATCAATCAGGCATGTCATATTGCTACGAG
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Coding sequence (CDS) from alignment at chr3:1446910..1448891+

>NO03G05120.1 ID=NO03G05120.1|Name=NO03G05120.1|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at chr3:1446910..1448891+ (Nannochloropsis oceanica)
ATGGGTTCGCGAGAAAGACGTAGGCAGCTACCATCCCTGACACCCCTGGA
AGACGGGGCTGGTGACCATAACAGAAGAAAAAGGGTGACCACCACCACCA
CTGCACTCTGTCTCACCGTTGTCCTTCTCCTCATTGCCACGCCCCCCATC
CAATCCACCAAGCAGCCCTTGTCCTTTTCTATCCTCCCCCGACTTTTCAG
AAGACAAGTACGCTCTCAAATTTTTACCACCTCCTCCTCCTCCGCCAGCA
TCTTTCCCCGCCTCTTCACCAGACGCGCTGGTTCAACCATCGTCTCCTCC
AGCACTGACCTTCCATCAAGCGCACCCGACAATATCCAACCAGCATCCCC
CTCCGCACCCGTCGCCGATCTCGGCTTCTCCTTCAGTCCCGCCGGTCTGC
TTTTCCCCTACCACCTGGGCGTCGCCTCCGTGCTACGAGAGAAGCGCTTG
CTCAATGACAAAGTCCCCTTGGGTGGTTCCAGTGCCGGTGCCCTCGTCGC
GGCTCTGATCGGTGCGGATATCCCCATCAAGAAAGCCCTGGACGCATGCC
ACACCATCAATGACCAATGGAGTGGTGCCATGTCTTTCACTAAAGGAATC
ACGGAGAGTCTAAATTTTGATTTTGGGGGCGGTTCTGGCTTAGACAAGAC
CCACGAGGAAGCTGTGGCGGTAGCACTAGCTGCGGGCGTCGGGCTTCCGC
CTCCGGTCGTGAAGAGTGCGAGGACTGGGAATAGCAAGACGTTGAAGGCT
TTGTTGCACGAGGTGTTGGATGAGATCTTGCCGCAAGATGCGCACTTAAG
GTTGAATGCGAGGGCAGGAAAGGTCACAATTGGCGTGACAGAACTTGGGT
GGTCGGGATTTCGCGCCAATTTTTTCCTCCGCCCCCGGGCCTTCTCCTCC
TTCACCTCCCGGGAAGACCTCATCGAAGTCCTCCTCGCCTCGTGCAATGT
CCCCATCCTCTTCTCGGGCTTTCCATCCCTGTCGTGTCGAGGCCTGCCTT
CCATCGACGGGTATTTCTCCGTCCCGCCCCATCGGTTTGGATGCCCCTAC
CTGCCCGAAGCGGAGAGAACAGTGCTGGTGTCGCCGTTTCCGGCCTCGGC
TGTGGAACGGGGTCCCGGGCCGACGGAGGAGGAGAGGAGGGGAAGGGAGT
GGCTGTCTCCCGAGGTGAGGAGAGCGGAGGAAGGGGAGGAGGGAGGAGGG
ACGATGCGGGAGTTGTTGAAGGACGCCTGGTCTGTGAATGGGCGGGAGGT
GGTGGAGAAGTATTATGAGATGGGGCGGCGAGATGCAGCTGTGTGGGTGC
AGACAAGTGGGTTTGTCAAGAGGAGGAAGGGGGGAGGGGGGCTGGGACTG
ATGTTGTCCTTCTTTTGA
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Synonyms
Publications