NO03G05050.1, NO03G05050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05050.1
Unique NameNO03G05050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr3:1431307..1432098 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1431307..1432098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05050.1 vs.
Match: EWM29939.1 (protein of unknown function DUF862, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 347.4 bits (890), Expect = 3.800e-92
Identity = 187/261 (71.65%), Postives = 210/261 (80.46%), Query Frame = 0 
Query:    6 SSLLFFILLSPIAAFLPPSPGPLASSRPSLPVFSSSSASASPEGDSRHQQHQHQQQQHNHVELRVYDIGGKYTPMMSALLRKEMPAIWHVGVGVYGKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEELDARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALPQGQAMLTKTIANQVARVVMLAWGNANRSKEEIARREARRKTKKIE---VDEAQANGPGKEGGQQMA 264
            SS +  I+  PIAAFLPP P    ++ P+    + SS+SA  + DS  +Q   Q   HN VELRVYDIGGKYTPMMSALLRKEMPAIWHVG+GV+GKEYWFSTRIESKDLGDTETAFGM PHATY+LG T VER+AFEA+LEEEL +RFNIDTYKVFTHNCNHFSRDALAFL+G  VEMP YILENSD+ALDALP+GQA+LTK+IANQVARVVMLAWG ANRSKE+IARREARRK    E   V+EA+    G E G Q A
Sbjct:   11 SSFVLLIINKPIAAFLPPIPFSATATSPTSARVTLSSSSALQD-DSFPEQGAFQ---HNKVELRVYDIGGKYTPMMSALLRKEMPAIWHVGIGVFGKEYWFSTRIESKDLGDTETAFGMAPHATYELGQTAVERKAFEAFLEEELSSRFNIDTYKVFTHNCNHFSRDALAFLLGEGVEMPGYILENSDRALDALPKGQALLTKSIANQVARVVMLAWGTANRSKEDIARREARRKKAMAERDSVEEAEEGRRGVEEGSQPA 267
The following BLAST results are available for this feature:
BLAST of NO03G05050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29939.13.800e-9271.65protein of unknown function DUF862, eukaryotic [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05050NO03G05050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05050.1NO03G05050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05050.1.cds1NO03G05050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05050.1 ID=NO03G05050.1|Name=NO03G05050.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ATGCCAAGGCTGTCGTCCTCTCTCCTGTTTTTTATCCTGCTTAGTCCCAT
TGCAGCCTTTCTTCCCCCATCACCCGGACCCCTAGCATCATCACGCCCAT
CCCTTCCTGTCTTCTCCTCCTCTTCTGCCTCTGCATCGCCCGAGGGAGAC
TCCCGGCACCAGCAGCACCAGCACCAGCAGCAGCAACACAACCACGTCGA
GTTGCGGGTCTACGACATCGGTGGAAAGTACACGCCAATGATGTCTGCGC
TACTCCGAAAGGAAATGCCTGCAATTTGGCACGTGGGCGTGGGTGTGTAC
GGGAAGGAGTATTGGTTCTCCACACGCATTGAGAGCAAAGACTTGGGAGA
CACAGAGACGGCGTTCGGAATGGTCCCACACGCGACGTATGATCTTGGGC
ACACATTGGTGGAGCGCGAGGCGTTCGAAGCCTATTTAGAGGAGGAGTTG
GATGCTCGATTTAACATTGACACATACAAGGTTTTCACGCATAATTGTAA
TCATTTCAGCCGGGATGCGTTGGCGTTTTTGATGGGGGGGAATGTGGAGA
TGCCCTCCTACATACTCGAAAATTCAGACAAGGCTTTGGATGCCTTGCCG
CAGGGGCAGGCGATGTTGACCAAGACGATTGCTAATCAGGTTGCTAGGGT
GGTAATGCTGGCATGGGGTAACGCCAATAGGAGCAAAGAGGAGATAGCGA
GGCGAGAAGCAAGGAGAAAGACGAAGAAGATCGAGGTGGACGAAGCACAA
GCCAATGGACCAGGAAAGGAAGGGGGGCAGCAGATGGCGTGA
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protein sequence of NO03G05050.1

>NO03G05050.1-protein ID=NO03G05050.1-protein|Name=NO03G05050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MPRLSSSLLFFILLSPIAAFLPPSPGPLASSRPSLPVFSSSSASASPEGD
SRHQQHQHQQQQHNHVELRVYDIGGKYTPMMSALLRKEMPAIWHVGVGVY
GKEYWFSTRIESKDLGDTETAFGMVPHATYDLGHTLVEREAFEAYLEEEL
DARFNIDTYKVFTHNCNHFSRDALAFLMGGNVEMPSYILENSDKALDALP
QGQAMLTKTIANQVARVVMLAWGNANRSKEEIARREARRKTKKIEVDEAQ
ANGPGKEGGQQMA*
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mRNA from alignment at chr3:1431307..1432098+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05050.1 ID=NO03G05050.1|Name=NO03G05050.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp|location=Sequence derived from alignment at chr3:1431307..1432098+ (Nannochloropsis oceanica)
ATGCCAAGGCTGTCGTCCTCTCTCCTGTTTTTTATCCTGCTTAGTCCCAT
TGCAGCCTTTCTTCCCCCATCACCCGGACCCCTAGCATCATCACGCCCAT
CCCTTCCTGTCTTCTCCTCCTCTTCTGCCTCTGCATCGCCCGAGGGAGAC
TCCCGGCACCAGCAGCACCAGCACCAGCAGCAGCAACACAACCACGTCGA
GTTGCGGGTCTACGACATCGGTGGAAAGTACACGCCAATGATGTCTGCGC
TACTCCGAAAGGAAATGCCTGCAATTTGGCACGTGGGCGTGGGTGTGTAC
GGGAAGGAGTATTGGTTCTCCACACGCATTGAGAGCAAAGACTTGGGAGA
CACAGAGACGGCGTTCGGAATGGTCCCACACGCGACGTATGATCTTGGGC
ACACATTGGTGGAGCGCGAGGCGTTCGAAGCCTATTTAGAGGAGGAGTTG
GATGCTCGATTTAACATTGACACATACAAGGTTTTCACGCATAATTGTAA
TCATTTCAGCCGGGATGCGTTGGCGTTTTTGATGGGGGGGAATGTGGAGA
TGCCCTCCTACATACTCGAAAATTCAGACAAGGCTTTGGATGCCTTGCCG
CAGGGGCAGGCGATGTTGACCAAGACGATTGCTAATCAGGTTGCTAGGGT
GGTAATGCTGGCATGGGGTAACGCCAATAGGAGCAAAGAGGAGATAGCGA
GGCGAGAAGCAAGGAGAAAGACGAAGAAGATCGAGGTGGACGAAGCACAA
GCCAATGGACCAGGAAAGGAAGGGGGGCAGCAGATGGCGTGA
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Coding sequence (CDS) from alignment at chr3:1431307..1432098+

>NO03G05050.1 ID=NO03G05050.1|Name=NO03G05050.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr3:1431307..1432098+ (Nannochloropsis oceanica)
ATGCCAAGGCTGTCGTCCTCTCTCCTGTTTTTTATCCTGCTTAGTCCCAT
TGCAGCCTTTCTTCCCCCATCACCCGGACCCCTAGCATCATCACGCCCAT
CCCTTCCTGTCTTCTCCTCCTCTTCTGCCTCTGCATCGCCCGAGGGAGAC
TCCCGGCACCAGCAGCACCAGCACCAGCAGCAGCAACACAACCACGTCGA
GTTGCGGGTCTACGACATCGGTGGAAAGTACACGCCAATGATGTCTGCGC
TACTCCGAAAGGAAATGCCTGCAATTTGGCACGTGGGCGTGGGTGTGTAC
GGGAAGGAGTATTGGTTCTCCACACGCATTGAGAGCAAAGACTTGGGAGA
CACAGAGACGGCGTTCGGAATGGTCCCACACGCGACGTATGATCTTGGGC
ACACATTGGTGGAGCGCGAGGCGTTCGAAGCCTATTTAGAGGAGGAGTTG
GATGCTCGATTTAACATTGACACATACAAGGTTTTCACGCATAATTGTAA
TCATTTCAGCCGGGATGCGTTGGCGTTTTTGATGGGGGGGAATGTGGAGA
TGCCCTCCTACATACTCGAAAATTCAGACAAGGCTTTGGATGCCTTGCCG
CAGGGGCAGGCGATGTTGACCAAGACGATTGCTAATCAGGTTGCTAGGGT
GGTAATGCTGGCATGGGGTAACGCCAATAGGAGCAAAGAGGAGATAGCGA
GGCGAGAAGCAAGGAGAAAGACGAAGAAGATCGAGGTGGACGAAGCACAA
GCCAATGGACCAGGAAAGGAAGGGGGGCAGCAGATGGCGTGA
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Synonyms
Publications