NO03G05040.1, NO03G05040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05040.1
Unique NameNO03G05040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr3:1429425..1430810 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1429425..1430810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05040.1 vs.
Match: EWM29942.1 (hypothetical protein Naga_100510g3 [Nannochloropsis gaditana])

HSP 1 Score: 531.2 bits (1367), Expect = 3.000e-147
Identity = 283/407 (69.53%), Postives = 322/407 (79.12%), Query Frame = 0 
Query:   20 VAEAFHVRLPLPVLRPGIA--AAVTYSHSHPSSSSGLIFMRRRRT--VLYNDQNGSGSSSRSKEGTVMDEAQLGEVEEEADLDGTGATLVMPSATTGPTSAAAPAVFQLWKRRLWTKADYLHSHAVSGTAFMVLGALYVLYFLGDELFAGAGLAHAENGVVGWVPLAIMWTGVINCISCLPMSKFRTGTSGGYDTKGAGFKGLGIGMTMLGIWTAYFFSGHYPAWMAPVDPVLAIGFLAVIIHGIVNSEVALAKELEEKAPAMTPEGVWKSSPSSSDETDPTAAAAATQQQLAVERETRTEIILNHRVASYPNLLHLPVLYNIILGGQDWLQQLLLKFPLEPTLLFHASFGIAVANSIVFLGATLKDRRLMTLRQWLLLQVVVLTPFVTTVVDVGTLGREVSINPFE 423
            V +AFHVRL      P +A  + V+     P SS GL   R R +   +YN  +   SS +S    V++E + GE + E +      T V+ ++   P +  A A+FQLWKRRLWTKADYLHSHAVSG AFMVLGALYVL+F+GD++F G+ LA AE GVVGWVPLAIMWTGV+NCISCLPMSKFR G  GGYDTKGAGFKGLGIGMTMLGIWTAYFFSGHYP+WMAPVDP+LA+GFLAVI+HGIVNSEVALAKELEEKAPAM+PEGVW S+PSS          A++      ERETRTEI+LNHRVASYPNLLHLPVLYN+ILGGQ WLQQ++ KFPLEPTLLFHASFGIAVANSIVFLGATLKDR+LMTLRQWLLLQVVV+TPFVTTVVDV +LGREVSINP E
Sbjct:   18 VLQAFHVRLVPKHALPALARRSPVSSLIFGPPSSHGLHHSRIRSSGFAMYNSPDDGTSSGQS---VVVEEVEKGETDLELN-----DTAVLTASVGSPATETANAMFQLWKRRLWTKADYLHSHAVSGAAFMVLGALYVLFFVGDQVFGGSALAQAERGVVGWVPLAIMWTGVVNCISCLPMSKFRAGPQGGYDTKGAGFKGLGIGMTMLGIWTAYFFSGHYPSWMAPVDPLLALGFLAVIVHGIVNSEVALAKELEEKAPAMSPEGVWSSTPSS---------PASSPDASLTERETRTEIVLNHRVASYPNLLHLPVLYNVILGGQPWLQQVVAKFPLEPTLLFHASFGIAVANSIVFLGATLKDRKLMTLRQWLLLQVVVMTPFVTTVVDVWSLGREVSINPLE 407
The following BLAST results are available for this feature:
BLAST of NO03G05040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29942.13.000e-14769.53hypothetical protein Naga_100510g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05040NO03G05040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05040.1NO03G05040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05040.1.cds1NO03G05040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05040.1 ID=NO03G05040.1|Name=NO03G05040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
ACTACAGGGCACGCAATGAAGGCTTCACCACCCCTTTTTACCTCAACCCT
AGCCGCGCTGGCCCTGCTCGCGGTCGCCGAGGCTTTCCACGTCCGCCTCC
CTCTTCCAGTTCTGAGACCAGGAATAGCAGCCGCCGTCACATACTCCCAT
TCCCATCCCAGCTCCAGCTCTGGCCTGATCTTTATGCGAAGAAGAAGGAC
CGTTCTCTACAATGATCAGAATGGTAGCGGCAGCAGCAGCCGCAGCAAGG
AAGGCACTGTGATGGATGAGGCGCAGCTGGGAGAGGTAGAGGAAGAGGCC
GACCTAGACGGCACCGGGGCGACGCTTGTCATGCCCTCCGCCACTACCGG
ACCCACCTCGGCCGCAGCTCCTGCCGTGTTCCAGCTCTGGAAGCGACGGT
TGTGGACCAAGGCGGATTATCTCCATTCGCACGCCGTGTCGGGCACAGCG
TTCATGGTGCTTGGGGCGCTCTATGTCCTATATTTCCTTGGGGACGAGCT
TTTTGCCGGGGCGGGCTTGGCGCACGCTGAGAACGGGGTGGTAGGATGGG
TTCCTCTGGCCATTATGTGGACAGGTGTGATCAACTGCATAAGTTGCTTG
CCCATGTCCAAGTTTCGGACAGGGACCAGTGGCGGGTACGACACGAAGGG
GGCGGGTTTTAAGGGGTTGGGGATTGGAATGACCATGCTGGGGATATGGA
CGGCTTATTTCTTCTCGGGACACTACCCTGCGTGGATGGCACCAGTTGAT
CCAGTCCTGGCAATCGGGTTCTTGGCGGTGATTATCCATGGCATCGTGAA
CTCGGAGGTGGCTTTAGCGAAAGAGCTGGAAGAGAAGGCGCCGGCCATGA
CCCCTGAGGGAGTGTGGAAGTCCTCCCCCTCTTCCTCTGACGAGACCGAC
CCAACCGCAGCAGCTGCAGCGACCCAACAGCAGCTGGCCGTCGAAAGAGA
GACACGCACGGAGATCATTCTCAATCACCGCGTGGCTTCCTACCCTAATC
TGCTGCACCTTCCCGTCCTCTACAACATTATTCTCGGAGGCCAAGACTGG
CTGCAGCAGCTCCTCCTCAAGTTTCCCCTCGAGCCCACCCTCCTCTTTCA
TGCCTCCTTCGGGATTGCTGTAGCGAACAGCATTGTATTTTTGGGTGCCA
CCTTGAAGGATCGACGATTGATGACCTTACGGCAATGGCTGTTGTTGCAG
GTGGTGGTGTTGACTCCGTTCGTCACCACAGTGGTGGATGTGGGAACGTT
GGGAAGAGAGGTGAGCATTAATCCGTTTGAGGTGTATGCGGGCTTGATCG
GCTGAGGGGGGACTGAAGCGGAGGAGGGGGGCATTATGCAGGGGCGGACG
CGATGGTCTTCGGGATTGCTGGAGGGAGGGCAGAAA
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protein sequence of NO03G05040.1

>NO03G05040.1-protein ID=NO03G05040.1-protein|Name=NO03G05040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MKASPPLFTSTLAALALLAVAEAFHVRLPLPVLRPGIAAAVTYSHSHPSS
SSGLIFMRRRRTVLYNDQNGSGSSSRSKEGTVMDEAQLGEVEEEADLDGT
GATLVMPSATTGPTSAAAPAVFQLWKRRLWTKADYLHSHAVSGTAFMVLG
ALYVLYFLGDELFAGAGLAHAENGVVGWVPLAIMWTGVINCISCLPMSKF
RTGTSGGYDTKGAGFKGLGIGMTMLGIWTAYFFSGHYPAWMAPVDPVLAI
GFLAVIIHGIVNSEVALAKELEEKAPAMTPEGVWKSSPSSSDETDPTAAA
AATQQQLAVERETRTEIILNHRVASYPNLLHLPVLYNIILGGQDWLQQLL
LKFPLEPTLLFHASFGIAVANSIVFLGATLKDRRLMTLRQWLLLQVVVLT
PFVTTVVDVGTLGREVSINPFEVYAGLIG*
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mRNA from alignment at chr3:1429425..1430810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05040.1 ID=NO03G05040.1|Name=NO03G05040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr3:1429425..1430810- (Nannochloropsis oceanica)
ACTACAGGGCACGCAATGAAGGCTTCACCACCCCTTTTTACCTCAACCCT
AGCCGCGCTGGCCCTGCTCGCGGTCGCCGAGGCTTTCCACGTCCGCCTCC
CTCTTCCAGTTCTGAGACCAGGAATAGCAGCCGCCGTCACATACTCCCAT
TCCCATCCCAGCTCCAGCTCTGGCCTGATCTTTATGCGAAGAAGAAGGAC
CGTTCTCTACAATGATCAGAATGGTAGCGGCAGCAGCAGCCGCAGCAAGG
AAGGCACTGTGATGGATGAGGCGCAGCTGGGAGAGGTAGAGGAAGAGGCC
GACCTAGACGGCACCGGGGCGACGCTTGTCATGCCCTCCGCCACTACCGG
ACCCACCTCGGCCGCAGCTCCTGCCGTGTTCCAGCTCTGGAAGCGACGGT
TGTGGACCAAGGCGGATTATCTCCATTCGCACGCCGTGTCGGGCACAGCG
TTCATGGTGCTTGGGGCGCTCTATGTCCTATATTTCCTTGGGGACGAGCT
TTTTGCCGGGGCGGGCTTGGCGCACGCTGAGAACGGGGTGGTAGGATGGG
TTCCTCTGGCCATTATGTGGACAGGTGTGATCAACTGCATAAGTTGCTTG
CCCATGTCCAAGTTTCGGACAGGGACCAGTGGCGGGTACGACACGAAGGG
GGCGGGTTTTAAGGGGTTGGGGATTGGAATGACCATGCTGGGGATATGGA
CGGCTTATTTCTTCTCGGGACACTACCCTGCGTGGATGGCACCAGTTGAT
CCAGTCCTGGCAATCGGGTTCTTGGCGGTGATTATCCATGGCATCGTGAA
CTCGGAGGTGGCTTTAGCGAAAGAGCTGGAAGAGAAGGCGCCGGCCATGA
CCCCTGAGGGAGTGTGGAAGTCCTCCCCCTCTTCCTCTGACGAGACCGAC
CCAACCGCAGCAGCTGCAGCGACCCAACAGCAGCTGGCCGTCGAAAGAGA
GACACGCACGGAGATCATTCTCAATCACCGCGTGGCTTCCTACCCTAATC
TGCTGCACCTTCCCGTCCTCTACAACATTATTCTCGGAGGCCAAGACTGG
CTGCAGCAGCTCCTCCTCAAGTTTCCCCTCGAGCCCACCCTCCTCTTTCA
TGCCTCCTTCGGGATTGCTGTAGCGAACAGCATTGTATTTTTGGGTGCCA
CCTTGAAGGATCGACGATTGATGACCTTACGGCAATGGCTGTTGTTGCAG
GTGGTGGTGTTGACTCCGTTCGTCACCACAGTGGTGGATGTGGGAACGTT
GGGAAGAGAGGTGAGCATTAATCCGTTTGAGGTGTATGCGGGCTTGATCG
GCTGAGGGGGGACTGAAGCGGAGGAGGGGGGCATTATGCAGGGGCGGACG
CGATGGTCTTCGGGATTGCTGGAGGGAGGGCAGAAA
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Coding sequence (CDS) from alignment at chr3:1429425..1430810-

>NO03G05040.1 ID=NO03G05040.1|Name=NO03G05040.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr3:1429425..1430810- (Nannochloropsis oceanica)
ATGAAGGCTTCACCACCCCTTTTTACCTCAACCCTAGCCGCGCTGGCCCT
GCTCGCGGTCGCCGAGGCTTTCCACGTCCGCCTCCCTCTTCCAGTTCTGA
GACCAGGAATAGCAGCCGCCGTCACATACTCCCATTCCCATCCCAGCTCC
AGCTCTGGCCTGATCTTTATGCGAAGAAGAAGGACCGTTCTCTACAATGA
TCAGAATGGTAGCGGCAGCAGCAGCCGCAGCAAGGAAGGCACTGTGATGG
ATGAGGCGCAGCTGGGAGAGGTAGAGGAAGAGGCCGACCTAGACGGCACC
GGGGCGACGCTTGTCATGCCCTCCGCCACTACCGGACCCACCTCGGCCGC
AGCTCCTGCCGTGTTCCAGCTCTGGAAGCGACGGTTGTGGACCAAGGCGG
ATTATCTCCATTCGCACGCCGTGTCGGGCACAGCGTTCATGGTGCTTGGG
GCGCTCTATGTCCTATATTTCCTTGGGGACGAGCTTTTTGCCGGGGCGGG
CTTGGCGCACGCTGAGAACGGGGTGGTAGGATGGGTTCCTCTGGCCATTA
TGTGGACAGGTGTGATCAACTGCATAAGTTGCTTGCCCATGTCCAAGTTT
CGGACAGGGACCAGTGGCGGGTACGACACGAAGGGGGCGGGTTTTAAGGG
GTTGGGGATTGGAATGACCATGCTGGGGATATGGACGGCTTATTTCTTCT
CGGGACACTACCCTGCGTGGATGGCACCAGTTGATCCAGTCCTGGCAATC
GGGTTCTTGGCGGTGATTATCCATGGCATCGTGAACTCGGAGGTGGCTTT
AGCGAAAGAGCTGGAAGAGAAGGCGCCGGCCATGACCCCTGAGGGAGTGT
GGAAGTCCTCCCCCTCTTCCTCTGACGAGACCGACCCAACCGCAGCAGCT
GCAGCGACCCAACAGCAGCTGGCCGTCGAAAGAGAGACACGCACGGAGAT
CATTCTCAATCACCGCGTGGCTTCCTACCCTAATCTGCTGCACCTTCCCG
TCCTCTACAACATTATTCTCGGAGGCCAAGACTGGCTGCAGCAGCTCCTC
CTCAAGTTTCCCCTCGAGCCCACCCTCCTCTTTCATGCCTCCTTCGGGAT
TGCTGTAGCGAACAGCATTGTATTTTTGGGTGCCACCTTGAAGGATCGAC
GATTGATGACCTTACGGCAATGGCTGTTGTTGCAGGTGGTGGTGTTGACT
CCGTTCGTCACCACAGTGGTGGATGTGGGAACGTTGGGAAGAGAGGTGAG
CATTAATCCGTTTGAGGTGTATGCGGGCTTGATCGGCTGA
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Synonyms
Publications