NO03G05020.1, NO03G05020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05020.1
Unique NameNO03G05020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1452
Alignment locationchr3:1424299..1426186 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1424299..1426186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05020.1 vs.
Match: EWM29941.1 (epoxide hydrolase 4 [Nannochloropsis gaditana])

HSP 1 Score: 503.8 bits (1296), Expect = 5.300e-139
Identity = 241/357 (67.51%), Postives = 282/357 (78.99%), Query Frame = 0 
Query:    8 SAPSDPS-FSF-SFLPNPSSAVHRFTASLLTHPLIVPLISYVYACPFLLLWAKVRLVCFIKGRKSQAPIAPSDAVAAALLNKRYGEHKYLHANGLRFHYVEKGTPSAHAPLVLFLHGFPEFWYSWRNQLHFLGTHGFHTVALDMRGYGWTEKPKEIAEYNLEVLVCDVREVIDALGYGPQEDGQEGRGCVLVGHDWGGTVAWTAAHVLGPSRIKGLCVMNCPHPKVYMEQATMAQFFKSWYFYFFQVPTLPETMLSAGQWQAVGACFRGKRSGVKRYDAAMSETDLAVMKHAFSQRGVVSGAVNYYRANIFRSKEEGVERATEGRLAMPVLLVWGLKDTALGEELLVGVDKYVEEGE 363
            S PS PS FSF +  P+   ++ R  A LLTHPL+VPLISY YA PFL+LWA+VRL  F+KG+K  APIAP+D VAAALLNK YG HKYL ANGLRFHYVE G PS+ +PLVLFLHGFPEFWYSWR+QL FLG+ GFH VALDMRGYGWT+KP+EIA YNLE LV DV  VID LGYGP+EDG  G GC+L+GHDWGG VAW AAHVLGP  ++GLCVMNCPHP  +M QA ++QFFKSWYFYFFQVP LPETML AG+W  +GA FRGKR G++R DA M++TDL VMKH FSQ GV   AVNYYRAN+FR KEE +E A  GR+ +PVL++WG +D AL E L+ G + +V  G+
Sbjct:   11 STPSSPSNFSFKASRPSLPRSLQRVLAKLLTHPLVVPLISYAYAAPFLILWARVRLASFLKGKKMLAPIAPTDDVAAALLNKEYGAHKYLEANGLRFHYVEAGHPSSTSPLVLFLHGFPEFWYSWRHQLQFLGSRGFHAVALDMRGYGWTDKPEEIASYNLEELVQDVSAVIDCLGYGPREDGTPGGGCLLIGHDWGGLVAWAAAHVLGPRWVRGLCVMNCPHPTAFMTQAGLSQFFKSWYFYFFQVPFLPETMLGAGEWTWIGASFRGKRMGLQRPDARMTDTDLLVMKHGFSQPGVARAAVNYYRANMFRRKEETMEEALAGRVPVPVLVIWGQQDKALEEILVDGTENHVAHGD 367
The following BLAST results are available for this feature:
BLAST of NO03G05020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29941.15.300e-13967.51epoxide hydrolase 4 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05020NO03G05020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05020.1NO03G05020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05020.1.cds1NO03G05020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05020.1.cds2NO03G05020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05020.1.cds3NO03G05020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05020.1.cds4NO03G05020.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05020.1 ID=NO03G05020.1|Name=NO03G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp
ATCATCACCGCTTTTTTCGCCCCCCCTAGACAAACATCCACAGGCGGCAT
CATGCCTCTACACTCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCT
TTTCATTCCTGCCCAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGC
CTACTCACCCACCCGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTG
TCCCTTTCTCTTACTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGG
GTCGAAAATCGCAAGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCG
CTGTTGAACAAGCGATACGGAGAGCATAAATACTTACATGCCAATGGCTT
GCGCTTCCATTATGTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGG
TCTTGTTCTTGCATGGCTTTCCTGAGTTCTGGTACTCGTGGCGCAATCAG
CTTCATTTCTTGGGCACCCATGGCTTCCACACTGTGGCTTTGGACATGAG
GGGGTATGGGTGGACCGAAAAGCCGAAAGAAATCGCAGAGTACAATCTAG
AGGTCCTGGTGTGCGATGTCCGGGAAGTGATCGACGCATTAGGCTACGGT
CCTCAGGAGGATGGGCAGGAGGGGAGGGGCTGTGTATTGGTAGGGCATGA
CTGGGGGGGAACGGTGGCATGGACGGCGGCACACGTGCTAGGCCCGTCTC
GGATCAAGGGCTTGTGTGTCATGAACTGCCCACATCCCAAGGTATACATG
GAGCAGGCGACGATGGCCCAATTTTTCAAATCGTGGTATTTCTATTTCTT
CCAAGTTCCCACTCTTCCCGAAACCATGCTGAGCGCCGGACAATGGCAAG
CCGTTGGGGCGTGCTTCCGAGGGAAACGCTCCGGGGTTAAACGGTATGAT
GCCGCCATGTCAGAAACGGACCTGGCCGTTATGAAGCACGCCTTCTCCCA
ACGGGGGGTGGTGTCAGGGGCCGTGAATTATTATCGGGCTAACATTTTCC
GGAGCAAGGAGGAGGGGGTGGAGAGAGCGACAGAGGGGCGGTTGGCGATG
CCCGTGTTGTTGGTGTGGGGGTTGAAGGACACTGCGTTAGGAGAGGAGCT
GCTGGTGGGTGTTGACAAATACGTGGAGGAGGGAGAGCTGAGGGTGGCGA
CTGTCGAGGATGCGAGCCACTGGGTTCAGGTGGATGCCTGGAAGGAAACG
TGTGACTTGGTTTGGCGGTTCGCAGTGCAAGTGCGGACGCGCGGTGCGGG
GAAAGGAGGGGAGGCTGGGAAAAATGGAGAAGGAGGAGGAGGAAATAGAG
GAGGAGGAGGAAGTAGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAG
GCGGCGTCATCGAACTTGTGAGTAGATTCTGGATGTACATAGCAAGCACC
AGCACAGAAAAAGATAACCACAGTGCAATGGAAACTAAACTGAAGGCTCT
CG
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protein sequence of NO03G05020.1

>NO03G05020.1-protein ID=NO03G05020.1-protein|Name=NO03G05020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MPLHSSSSAPSDPSFSFSFLPNPSSAVHRFTASLLTHPLIVPLISYVYAC
PFLLLWAKVRLVCFIKGRKSQAPIAPSDAVAAALLNKRYGEHKYLHANGL
RFHYVEKGTPSAHAPLVLFLHGFPEFWYSWRNQLHFLGTHGFHTVALDMR
GYGWTEKPKEIAEYNLEVLVCDVREVIDALGYGPQEDGQEGRGCVLVGHD
WGGTVAWTAAHVLGPSRIKGLCVMNCPHPKVYMEQATMAQFFKSWYFYFF
QVPTLPETMLSAGQWQAVGACFRGKRSGVKRYDAAMSETDLAVMKHAFSQ
RGVVSGAVNYYRANIFRSKEEGVERATEGRLAMPVLLVWGLKDTALGEEL
LVGVDKYVEEGELRVATVEDASHWVQVDAWKETCDLVWRFAVQVRTRGAG
KGGEAGKNGEGGGGNRGGGGSRGGGGGGGDNYKAASSNL*
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mRNA from alignment at chr3:1424299..1426186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05020.1 ID=NO03G05020.1|Name=NO03G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp|location=Sequence derived from alignment at chr3:1424299..1426186- (Nannochloropsis oceanica)
ATCATCACCGCTTTTTTCGCCCCCCCTAGACAAACATCCACAGGCGGCAT
CATGCCTCTACACTCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCT
TTTCATTCCTGCCCAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGC
CTACTCACCCACCCGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTG
TCCCTTTCTCTTACTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGG
GTCGAAAATCGCAAGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCG
CTGTTGAACAAGCGATACGGAGAGCATAAATACTTACATGCCAATGGCTT
GCGCTTCCATTATGTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGG
TCTTGTTCTTGCATGGTAATGTCAACAAGTAGAAATGATGGAGAGGTGAG
GGAGGGAATGAAAGTGGATTTCGCGTTAGGACTTAAGAGGAGTCCTCTCT
TTCTCCTTCCCTTCTTCCCATGATCCCTGGGTACAGGCTTTCCTGAGTTC
TGGTACTCGTGGCGCAATCAGCTTCATTTCTTGGGCACCCATGGCTTCCA
CACTGTGGCTTTGGACATGAGGGGGTATGGGTGGACCGAAAAGCCGAAAG
GTAGGGAAGGTTGAGGGGATGGAGGGAGGTAGCGAAGGAGGGATGAATGA
CTAGTGTTACAAGAGAAGCTCTTTCAGGTGTCTTAATTCACTTCCTTTCC
TTCCTTCCTCCCCTCCGCATGACAGAAATCGCAGAGTACAATCTAGAGGT
CCTGGTGTGCGATGTCCGGGAAGTGATCGACGCATTAGGCTACGGTCCTC
AGGAGGATGGGCAGGAGGGGAGGGGCTGTGTATTGGTAGGGCATGACTGG
GGGGGAACGGTGGCATGGACGGCGGCACACGTGCTAGGCCCGTCTCGGAT
CAAGGGCTTGTGTGTCATGAACTGCCCACATCCCAAGGTATACATGGAGC
AGGCGACGATGGCCCAATTTTTCAAATCGTGGTATTTCTATTGTGCGTAG
AAAAGGGGAGGTGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGA
GGGAAGGGACACGGACCGGATCACAAATACTGATGTGCCTCGTTGCGCCC
TCCTCATATCAACCCCCCCCCCCTCCTCCCTCCGCTCTCCCTCTCTCCCT
CCTTCCCTTCCTCCTTCTTCTCCTCCTTTAAGTCTTCCAAGTTCCCACTC
TTCCCGAAACCATGCTGAGCGCCGGACAATGGCAAGCCGTTGGGGCGTGC
TTCCGAGGGAAACGCTCCGGGGTTAAACGGTATGATGCCGCCATGTCAGA
AACGGACCTGGCCGTTATGAAGCACGCCTTCTCCCAACGGGGGGTGGTGT
CAGGGGCCGTGAATTATTATCGGGCTAACATTTTCCGGAGCAAGGAGGAG
GGGGTGGAGAGAGCGACAGAGGGGCGGTTGGCGATGCCCGTGTTGTTGGT
GTGGGGGTTGAAGGACACTGCGTTAGGAGAGGAGCTGCTGGTGGGTGTTG
ACAAATACGTGGAGGAGGGAGAGCTGAGGGTGGCGACTGTCGAGGATGCG
AGCCACTGGGTTCAGGTGGATGCCTGGAAGGAAACGTGTGACTTGGTTTG
GCGGTTCGCAGTGCAAGTGCGGACGCGCGGTGCGGGGAAAGGAGGGGAGG
CTGGGAAAAATGGAGAAGGAGGAGGAGGAAATAGAGGAGGAGGAGGAAGT
AGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAGGCGGCGTCATCGAA
CTTGTGAGTAGATTCTGGATGTACATAGCAAGCACCAGCACAGAAAAAGA
TAACCACAGTGCAATGGAAACTAAACTGAAGGCTCTCG
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Coding sequence (CDS) from alignment at chr3:1424299..1426186-

>NO03G05020.1 ID=NO03G05020.1|Name=NO03G05020.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr3:1424299..1426186- (Nannochloropsis oceanica)
ATGCCTCTACACTCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCTT
TTCATTCCTGCCCAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGCC
TACTCACCCACCCGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTGT
CCCTTTCTCTTACTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGGG
TCGAAAATCGCAAGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCGC
TGTTGAACAAGCGATACGGAGAGCATAAATACTTACATGCCAATGGCTTG
CGCTTCCATTATGTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGGT
CTTGTTCTTGCATGGCTTTCCTGAGTTCTGGTACTCGTGGCGCAATCAGC
TTCATTTCTTGGGCACCCATGGCTTCCACACTGTGGCTTTGGACATGAGG
GGGTATGGGTGGACCGAAAAGCCGAAAGAAATCGCAGAGTACAATCTAGA
GGTCCTGGTGTGCGATGTCCGGGAAGTGATCGACGCATTAGGCTACGGTC
CTCAGGAGGATGGGCAGGAGGGGAGGGGCTGTGTATTGGTAGGGCATGAC
TGGGGGGGAACGGTGGCATGGACGGCGGCACACGTGCTAGGCCCGTCTCG
GATCAAGGGCTTGTGTGTCATGAACTGCCCACATCCCAAGGTATACATGG
AGCAGGCGACGATGGCCCAATTTTTCAAATCGTGGTATTTCTATTTCTTC
CAAGTTCCCACTCTTCCCGAAACCATGCTGAGCGCCGGACAATGGCAAGC
CGTTGGGGCGTGCTTCCGAGGGAAACGCTCCGGGGTTAAACGGTATGATG
CCGCCATGTCAGAAACGGACCTGGCCGTTATGAAGCACGCCTTCTCCCAA
CGGGGGGTGGTGTCAGGGGCCGTGAATTATTATCGGGCTAACATTTTCCG
GAGCAAGGAGGAGGGGGTGGAGAGAGCGACAGAGGGGCGGTTGGCGATGC
CCGTGTTGTTGGTGTGGGGGTTGAAGGACACTGCGTTAGGAGAGGAGCTG
CTGGTGGGTGTTGACAAATACGTGGAGGAGGGAGAGCTGAGGGTGGCGAC
TGTCGAGGATGCGAGCCACTGGGTTCAGGTGGATGCCTGGAAGGAAACGT
GTGACTTGGTTTGGCGGTTCGCAGTGCAAGTGCGGACGCGCGGTGCGGGG
AAAGGAGGGGAGGCTGGGAAAAATGGAGAAGGAGGAGGAGGAAATAGAGG
AGGAGGAGGAAGTAGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAGG
CGGCGTCATCGAACTTGTGA
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Synonyms
Publications