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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1424299..1426186 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G05020.1 vs.
Match: EWM29941.1 (epoxide hydrolase 4 [Nannochloropsis gaditana]) HSP 1 Score: 503.8 bits (1296), Expect = 5.300e-139 Identity = 241/357 (67.51%), Postives = 282/357 (78.99%), Query Frame = 0
Query: 8 SAPSDPS-FSF-SFLPNPSSAVHRFTASLLTHPLIVPLISYVYACPFLLLWAKVRLVCFIKGRKSQAPIAPSDAVAAALLNKRYGEHKYLHANGLRFHYVEKGTPSAHAPLVLFLHGFPEFWYSWRNQLHFLGTHGFHTVALDMRGYGWTEKPKEIAEYNLEVLVCDVREVIDALGYGPQEDGQEGRGCVLVGHDWGGTVAWTAAHVLGPSRIKGLCVMNCPHPKVYMEQATMAQFFKSWYFYFFQVPTLPETMLSAGQWQAVGACFRGKRSGVKRYDAAMSETDLAVMKHAFSQRGVVSGAVNYYRANIFRSKEEGVERATEGRLAMPVLLVWGLKDTALGEELLVGVDKYVEEGE 363
S PS PS FSF + P+ ++ R A LLTHPL+VPLISY YA PFL+LWA+VRL F+KG+K APIAP+D VAAALLNK YG HKYL ANGLRFHYVE G PS+ +PLVLFLHGFPEFWYSWR+QL FLG+ GFH VALDMRGYGWT+KP+EIA YNLE LV DV VID LGYGP+EDG G GC+L+GHDWGG VAW AAHVLGP ++GLCVMNCPHP +M QA ++QFFKSWYFYFFQVP LPETML AG+W +GA FRGKR G++R DA M++TDL VMKH FSQ GV AVNYYRAN+FR KEE +E A GR+ +PVL++WG +D AL E L+ G + +V G+
Sbjct: 11 STPSSPSNFSFKASRPSLPRSLQRVLAKLLTHPLVVPLISYAYAAPFLILWARVRLASFLKGKKMLAPIAPTDDVAAALLNKEYGAHKYLEANGLRFHYVEAGHPSSTSPLVLFLHGFPEFWYSWRHQLQFLGSRGFHAVALDMRGYGWTDKPEEIASYNLEELVQDVSAVIDCLGYGPREDGTPGGGCLLIGHDWGGLVAWAAAHVLGPRWVRGLCVMNCPHPTAFMTQAGLSQFFKSWYFYFFQVPFLPETMLGAGEWTWIGASFRGKRMGLQRPDARMTDTDLLVMKHGFSQPGVARAAVNYYRANMFRRKEETMEEALAGRVPVPVLVIWGQQDKALEEILVDGTENHVAHGD 367
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G05020.1 ID=NO03G05020.1|Name=NO03G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp ATCATCACCGCTTTTTTCGCCCCCCCTAGACAAACATCCACAGGCGGCAT CATGCCTCTACACTCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCT TTTCATTCCTGCCCAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGC CTACTCACCCACCCGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTG TCCCTTTCTCTTACTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGG GTCGAAAATCGCAAGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCG CTGTTGAACAAGCGATACGGAGAGCATAAATACTTACATGCCAATGGCTT GCGCTTCCATTATGTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGG TCTTGTTCTTGCATGGCTTTCCTGAGTTCTGGTACTCGTGGCGCAATCAG CTTCATTTCTTGGGCACCCATGGCTTCCACACTGTGGCTTTGGACATGAG GGGGTATGGGTGGACCGAAAAGCCGAAAGAAATCGCAGAGTACAATCTAG AGGTCCTGGTGTGCGATGTCCGGGAAGTGATCGACGCATTAGGCTACGGT CCTCAGGAGGATGGGCAGGAGGGGAGGGGCTGTGTATTGGTAGGGCATGA CTGGGGGGGAACGGTGGCATGGACGGCGGCACACGTGCTAGGCCCGTCTC GGATCAAGGGCTTGTGTGTCATGAACTGCCCACATCCCAAGGTATACATG GAGCAGGCGACGATGGCCCAATTTTTCAAATCGTGGTATTTCTATTTCTT CCAAGTTCCCACTCTTCCCGAAACCATGCTGAGCGCCGGACAATGGCAAG CCGTTGGGGCGTGCTTCCGAGGGAAACGCTCCGGGGTTAAACGGTATGAT GCCGCCATGTCAGAAACGGACCTGGCCGTTATGAAGCACGCCTTCTCCCA ACGGGGGGTGGTGTCAGGGGCCGTGAATTATTATCGGGCTAACATTTTCC GGAGCAAGGAGGAGGGGGTGGAGAGAGCGACAGAGGGGCGGTTGGCGATG CCCGTGTTGTTGGTGTGGGGGTTGAAGGACACTGCGTTAGGAGAGGAGCT GCTGGTGGGTGTTGACAAATACGTGGAGGAGGGAGAGCTGAGGGTGGCGA CTGTCGAGGATGCGAGCCACTGGGTTCAGGTGGATGCCTGGAAGGAAACG TGTGACTTGGTTTGGCGGTTCGCAGTGCAAGTGCGGACGCGCGGTGCGGG GAAAGGAGGGGAGGCTGGGAAAAATGGAGAAGGAGGAGGAGGAAATAGAG GAGGAGGAGGAAGTAGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAG GCGGCGTCATCGAACTTGTGAGTAGATTCTGGATGTACATAGCAAGCACC AGCACAGAAAAAGATAACCACAGTGCAATGGAAACTAAACTGAAGGCTCT CG back to topprotein sequence of NO03G05020.1 >NO03G05020.1-protein ID=NO03G05020.1-protein|Name=NO03G05020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp MPLHSSSSAPSDPSFSFSFLPNPSSAVHRFTASLLTHPLIVPLISYVYAC PFLLLWAKVRLVCFIKGRKSQAPIAPSDAVAAALLNKRYGEHKYLHANGL RFHYVEKGTPSAHAPLVLFLHGFPEFWYSWRNQLHFLGTHGFHTVALDMR GYGWTEKPKEIAEYNLEVLVCDVREVIDALGYGPQEDGQEGRGCVLVGHD WGGTVAWTAAHVLGPSRIKGLCVMNCPHPKVYMEQATMAQFFKSWYFYFF QVPTLPETMLSAGQWQAVGACFRGKRSGVKRYDAAMSETDLAVMKHAFSQ RGVVSGAVNYYRANIFRSKEEGVERATEGRLAMPVLLVWGLKDTALGEEL LVGVDKYVEEGELRVATVEDASHWVQVDAWKETCDLVWRFAVQVRTRGAG KGGEAGKNGEGGGGNRGGGGSRGGGGGGGDNYKAASSNL* back to topmRNA from alignment at chr3:1424299..1426186- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G05020.1 ID=NO03G05020.1|Name=NO03G05020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp|location=Sequence derived from alignment at chr3:1424299..1426186- (Nannochloropsis oceanica) ATCATCACCGCTTTTTTCGCCCCCCCTAGACAAACATCCACAGGCGGCAT
CATGCCTCTACACTCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCT
TTTCATTCCTGCCCAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGC
CTACTCACCCACCCGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTG
TCCCTTTCTCTTACTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGG
GTCGAAAATCGCAAGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCG
CTGTTGAACAAGCGATACGGAGAGCATAAATACTTACATGCCAATGGCTT
GCGCTTCCATTATGTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGG
TCTTGTTCTTGCATGGTAATGTCAACAAGTAGAAATGATGGAGAGGTGAG
GGAGGGAATGAAAGTGGATTTCGCGTTAGGACTTAAGAGGAGTCCTCTCT
TTCTCCTTCCCTTCTTCCCATGATCCCTGGGTACAGGCTTTCCTGAGTTC
TGGTACTCGTGGCGCAATCAGCTTCATTTCTTGGGCACCCATGGCTTCCA
CACTGTGGCTTTGGACATGAGGGGGTATGGGTGGACCGAAAAGCCGAAAG
GTAGGGAAGGTTGAGGGGATGGAGGGAGGTAGCGAAGGAGGGATGAATGA
CTAGTGTTACAAGAGAAGCTCTTTCAGGTGTCTTAATTCACTTCCTTTCC
TTCCTTCCTCCCCTCCGCATGACAGAAATCGCAGAGTACAATCTAGAGGT
CCTGGTGTGCGATGTCCGGGAAGTGATCGACGCATTAGGCTACGGTCCTC
AGGAGGATGGGCAGGAGGGGAGGGGCTGTGTATTGGTAGGGCATGACTGG
GGGGGAACGGTGGCATGGACGGCGGCACACGTGCTAGGCCCGTCTCGGAT
CAAGGGCTTGTGTGTCATGAACTGCCCACATCCCAAGGTATACATGGAGC
AGGCGACGATGGCCCAATTTTTCAAATCGTGGTATTTCTATTGTGCGTAG
AAAAGGGGAGGTGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGA
GGGAAGGGACACGGACCGGATCACAAATACTGATGTGCCTCGTTGCGCCC
TCCTCATATCAACCCCCCCCCCCTCCTCCCTCCGCTCTCCCTCTCTCCCT
CCTTCCCTTCCTCCTTCTTCTCCTCCTTTAAGTCTTCCAAGTTCCCACTC
TTCCCGAAACCATGCTGAGCGCCGGACAATGGCAAGCCGTTGGGGCGTGC
TTCCGAGGGAAACGCTCCGGGGTTAAACGGTATGATGCCGCCATGTCAGA
AACGGACCTGGCCGTTATGAAGCACGCCTTCTCCCAACGGGGGGTGGTGT
CAGGGGCCGTGAATTATTATCGGGCTAACATTTTCCGGAGCAAGGAGGAG
GGGGTGGAGAGAGCGACAGAGGGGCGGTTGGCGATGCCCGTGTTGTTGGT
GTGGGGGTTGAAGGACACTGCGTTAGGAGAGGAGCTGCTGGTGGGTGTTG
ACAAATACGTGGAGGAGGGAGAGCTGAGGGTGGCGACTGTCGAGGATGCG
AGCCACTGGGTTCAGGTGGATGCCTGGAAGGAAACGTGTGACTTGGTTTG
GCGGTTCGCAGTGCAAGTGCGGACGCGCGGTGCGGGGAAAGGAGGGGAGG
CTGGGAAAAATGGAGAAGGAGGAGGAGGAAATAGAGGAGGAGGAGGAAGT
AGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAGGCGGCGTCATCGAA
CTTGTGAGTAGATTCTGGATGTACATAGCAAGCACCAGCACAGAAAAAGA
TAACCACAGTGCAATGGAAACTAAACTGAAGGCTCTCG back to topCoding sequence (CDS) from alignment at chr3:1424299..1426186- >NO03G05020.1 ID=NO03G05020.1|Name=NO03G05020.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr3:1424299..1426186- (Nannochloropsis oceanica) ATGCCTCTACACTCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCTT TTCATTCCTGCCCAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGCC TACTCACCCACCCGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTGT CCCTTTCTCTTACTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGGG TCGAAAATCGCAAGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCGC TGTTGAACAAGCGATACGGAGAGCATAAATACTTACATGCCAATGGCTTG CGCTTCCATTATGTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGGT CTTGTTCTTGCATGGCTTTCCTGAGTTCTGGTACTCGTGGCGCAATCAGC TTCATTTCTTGGGCACCCATGGCTTCCACACTGTGGCTTTGGACATGAGG GGGTATGGGTGGACCGAAAAGCCGAAAGAAATCGCAGAGTACAATCTAGA GGTCCTGGTGTGCGATGTCCGGGAAGTGATCGACGCATTAGGCTACGGTC CTCAGGAGGATGGGCAGGAGGGGAGGGGCTGTGTATTGGTAGGGCATGAC TGGGGGGGAACGGTGGCATGGACGGCGGCACACGTGCTAGGCCCGTCTCG GATCAAGGGCTTGTGTGTCATGAACTGCCCACATCCCAAGGTATACATGG AGCAGGCGACGATGGCCCAATTTTTCAAATCGTGGTATTTCTATTTCTTC CAAGTTCCCACTCTTCCCGAAACCATGCTGAGCGCCGGACAATGGCAAGC CGTTGGGGCGTGCTTCCGAGGGAAACGCTCCGGGGTTAAACGGTATGATG CCGCCATGTCAGAAACGGACCTGGCCGTTATGAAGCACGCCTTCTCCCAA CGGGGGGTGGTGTCAGGGGCCGTGAATTATTATCGGGCTAACATTTTCCG GAGCAAGGAGGAGGGGGTGGAGAGAGCGACAGAGGGGCGGTTGGCGATGC CCGTGTTGTTGGTGTGGGGGTTGAAGGACACTGCGTTAGGAGAGGAGCTG CTGGTGGGTGTTGACAAATACGTGGAGGAGGGAGAGCTGAGGGTGGCGAC TGTCGAGGATGCGAGCCACTGGGTTCAGGTGGATGCCTGGAAGGAAACGT GTGACTTGGTTTGGCGGTTCGCAGTGCAAGTGCGGACGCGCGGTGCGGGG AAAGGAGGGGAGGCTGGGAAAAATGGAGAAGGAGGAGGAGGAAATAGAGG AGGAGGAGGAAGTAGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAGG CGGCGTCATCGAACTTGTGA back to top
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