NO03G04860.1, NO03G04860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04860.1
Unique NameNO03G04860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2133
Alignment locationchr3:1384825..1386957 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1384825..1386957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO03G04860.1 vs.
Match: EWM29915.1 (hypothetical protein Naga_100035g5 [Nannochloropsis gaditana])

HSP 1 Score: 399.8 bits (1026), Expect = 1.700e-107
Identity = 273/613 (44.54%), Postives = 353/613 (57.59%), Query Frame = 0
Query:  131 QQHQQQQQQQQQQAQP-RQQEQWVSTTPAADADKLSVGNPPVVDFGNFLNIDFYRKKAEELEAWAQQEGILPTYQGRASMMEQRQRARAESDGVVDMPRYLTSSDNDEEPKVDVPRLEPAEASAFDEGVNYYKALSEWQQNYWKEYAKEWVAWSQQQGLSPSFPSPR------------DAPRKLQGEVEAPPNDAFDERMEEYKASAEYFAALKEWQKDYWTAYGKGWAKWTVDQGYAPSPESKTYHPKHVAAGVQEIAKDTVDSAATTTAETVNHYNAVASQETDYWQEQAHYRRQKGAARGQAWVEWAQRQGYMPTPENPPEEQ----PVVAAEDGGK-EGKTSRRLDAFDDRMARYEAIGKFEEQYWKKRGKSWEQWAIEQGYAPGPDSKFGKADAAIDPAQAEAELHAERAQWDEQQRQEEPVVAS----------AAADKAEAIRGDSYQTEGRSWAEWLRTQTFGEDEEVLNMQSTPGFKGQEGPVQSIREKLRMDVGVGGEIYAAVPEESVSDKAREDVYKHQSWMGRSATRVVNGIENGAGHVYSAGERLVSRAEDAAKSAV---GVATPAAPVAISEEAAAETIPAPQPKQ--QQKRMRGQAK 711
            ++H+ QQ    +  +    +E+WV    AA+  +   G     +F   +++ FY KKA +LEAWA+QEG LP++  +    +Q      E D V D+PR+L     D  P        PA+ +      +YYKAL EWQ+ YW+ YAK+WV   ++QG  PS  S R            D PR+L    E    DAFDERMEEYKASA Y AAL EW+K+YWTAYG GWA W  D+G+APSP S  Y      A VQE  K   D         +N ++A+  QE+ YW+EQ+  R++KG ARGQAW++WA ++GYMP PE P E +     V     GGK E + SRRLDAFDDRMARYEAIG+FE +YWKKRGKSWEQWAI+QGYAPGPDSK+ K         AE +L A + Q  +QQ+Q++P +A+             DKAEAIRGD Y+ +GR+WAEWLR +TFGE         T G++G+ G   S   K+  DVG  G    A+      D+A EDVYKHQ+WMGRS  RVVNG+E GA H Y+AGER+VSRAE+  + AV          P+           P  QP Q  +Q+ MRG  K
Sbjct:  109 KKHETQQALNDRLPETLSSEERWVPM--AANGAQEVFGGASAKEFDTVVDMAFYEKKARDLEAWARQEGRLPSFTHK-QQQKQEIETPEEEDRVRDVPRHLA----DATP--------PAQEAL----TSYYKALGEWQKAYWEAYAKQWVNIGERQGFVPSEKSNRRAATDGDDDDSVDVPRRLG---EEGSGDAFDERMEEYKASAAYLAALGEWEKNYWTAYGDGWAHWAQDRGFAPSPNSNRY------AQVQEDDKSLKDQGF------LNRFDAMVEQESAYWREQSESRKEKGEARGQAWLDWAVQRGYMPPPEGPGEPRGGSDAVAPKTKGGKGEYQGSRRLDAFDDRMARYEAIGQFEAEYWKKRGKSWEQWAIDQGYAPGPDSKYRK--------PAEEDL-AWQQQQQQQQKQQQPTMAANEEGQPMPVGGLDDKAEAIRGDFYKADGRNWAEWLRARTFGEG-SAEEYAPTQGYEGKAGAAHSSAYKIGTDVGADG----AILLNQDIDRAVEDVYKHQTWMGRSTARVVNGMEKGAEHAYAAGERIVSRAENRVEDAVEAYDATVDDRPIGEKTVKVPAEEPVEQPAQAPKQRHMRGAGK 673          
The following BLAST results are available for this feature:
BLAST of NO03G04860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29915.11.700e-10744.54hypothetical protein Naga_100035g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04860NO03G04860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04860.1NO03G04860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04860.1.cds1NO03G04860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04860.1 ID=NO03G04860.1|Name=NO03G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp
ATGCGGCTGGCTTTGTCCACCCTCACCGCCAGTGCCTTGGTATGGGTCAC
GCTGGCACAGCCAGAAGCCTCCCATGGTCGGAGCCCGCACGCCCACCCAG
AGCAGAAGTCTGTCGCCACGTCCACCGAGGCATTCAAGCCTATCGACGAG
GGTGGTCGACGCCTGGATGCATTTGACGACCGTATGGCCGGCTATGAGCA
GAAAGGGAAGTACTGGGAGCAATGGGCCATCGACCACGGCTATGCCCCAG
GCCCCAACTCCAAATACGGCAAGCCACCCCAGCAGCAGCAGCAGCAGCAG
CAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACA
ACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACATC
AACAACAACAACAACAGCAGCAGCAGCAGGCCCAGCCCCGTCAACAGGAG
CAGTGGGTCTCTACGACGCCCGCCGCCGACGCCGACAAGTTGTCTGTTGG
CAATCCTCCGGTTGTAGACTTTGGGAATTTCCTTAACATTGACTTTTACC
GGAAAAAGGCCGAGGAACTCGAGGCCTGGGCGCAGCAAGAAGGCATATTG
CCCACCTACCAGGGCAGAGCCTCGATGATGGAGCAGCGGCAACGTGCGCG
TGCCGAAAGCGACGGTGTAGTAGACATGCCACGCTACTTGACTTCATCCG
ACAACGACGAGGAGCCCAAAGTTGATGTGCCGCGCCTCGAGCCTGCCGAA
GCGTCTGCTTTTGACGAAGGCGTGAATTACTACAAGGCCCTGAGTGAGTG
GCAGCAGAACTACTGGAAAGAGTACGCCAAAGAGTGGGTGGCCTGGAGCC
AGCAGCAGGGTCTCTCTCCTTCCTTTCCCTCCCCGAGGGACGCCCCTCGT
AAATTGCAGGGGGAAGTAGAGGCGCCACCGAATGACGCGTTCGATGAGCG
GATGGAGGAGTATAAAGCTTCGGCTGAGTATTTCGCTGCCCTGAAGGAGT
GGCAGAAGGATTACTGGACGGCCTATGGGAAGGGATGGGCGAAGTGGACG
GTTGATCAGGGCTATGCTCCCTCTCCCGAGTCAAAGACTTACCACCCGAA
GCACGTCGCGGCGGGGGTCCAGGAGATTGCGAAGGATACAGTGGACTCGG
CGGCGACGACGACGGCTGAGACCGTGAATCACTACAATGCTGTGGCTAGC
CAGGAGACGGATTATTGGCAAGAGCAGGCGCACTACCGCAGGCAAAAGGG
TGCGGCCCGTGGACAGGCCTGGGTTGAGTGGGCTCAGCGTCAGGGCTACA
TGCCCACACCCGAGAACCCTCCTGAAGAGCAGCCGGTGGTGGCGGCGGAG
GATGGAGGGAAGGAGGGCAAGACCAGCCGTCGGCTGGACGCGTTTGATGA
TCGCATGGCCAGGTATGAAGCGATTGGAAAATTCGAGGAGCAGTACTGGA
AGAAACGGGGGAAGAGCTGGGAGCAGTGGGCGATCGAACAGGGCTATGCT
CCTGGGCCAGACTCCAAGTTCGGCAAAGCTGACGCTGCAATCGACCCAGC
TCAGGCGGAGGCAGAATTGCACGCGGAGCGAGCGCAGTGGGATGAGCAGC
AGAGACAGGAAGAACCGGTCGTGGCGTCGGCGGCGGCAGATAAAGCTGAG
GCGATTCGTGGGGATTCGTATCAAACTGAGGGACGGAGCTGGGCCGAGTG
GCTCCGTACGCAGACTTTTGGGGAGGACGAGGAGGTGTTGAACATGCAGA
GCACGCCAGGCTTCAAGGGCCAGGAGGGACCTGTGCAATCGATCAGGGAG
AAGCTACGTATGGACGTGGGGGTGGGAGGCGAGATTTACGCGGCTGTGCC
TGAGGAGAGCGTCAGCGATAAGGCGCGGGAGGATGTGTATAAGCACCAAT
CTTGGATGGGGCGAAGCGCGACGCGTGTGGTGAATGGAATAGAAAATGGG
GCGGGGCATGTGTATTCGGCCGGGGAGCGCCTTGTCTCTCGGGCTGAGGA
TGCTGCCAAGTCGGCTGTGGGCGTTGCTACTCCCGCTGCTCCTGTTGCGA
TTTCCGAAGAGGCTGCAGCCGAGACGATCCCTGCGCCCCAGCCCAAGCAG
CAGCAGAAGCGCATGCGCGGACAGGCCAAGTAG
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protein sequence of NO03G04860.1

>NO03G04860.1-protein ID=NO03G04860.1-protein|Name=NO03G04860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MRLALSTLTASALVWVTLAQPEASHGRSPHAHPEQKSVATSTEAFKPIDE
GGRRLDAFDDRMAGYEQKGKYWEQWAIDHGYAPGPNSKYGKPPQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQAQPRQQE
QWVSTTPAADADKLSVGNPPVVDFGNFLNIDFYRKKAEELEAWAQQEGIL
PTYQGRASMMEQRQRARAESDGVVDMPRYLTSSDNDEEPKVDVPRLEPAE
ASAFDEGVNYYKALSEWQQNYWKEYAKEWVAWSQQQGLSPSFPSPRDAPR
KLQGEVEAPPNDAFDERMEEYKASAEYFAALKEWQKDYWTAYGKGWAKWT
VDQGYAPSPESKTYHPKHVAAGVQEIAKDTVDSAATTTAETVNHYNAVAS
QETDYWQEQAHYRRQKGAARGQAWVEWAQRQGYMPTPENPPEEQPVVAAE
DGGKEGKTSRRLDAFDDRMARYEAIGKFEEQYWKKRGKSWEQWAIEQGYA
PGPDSKFGKADAAIDPAQAEAELHAERAQWDEQQRQEEPVVASAAADKAE
AIRGDSYQTEGRSWAEWLRTQTFGEDEEVLNMQSTPGFKGQEGPVQSIRE
KLRMDVGVGGEIYAAVPEESVSDKAREDVYKHQSWMGRSATRVVNGIENG
AGHVYSAGERLVSRAEDAAKSAVGVATPAAPVAISEEAAAETIPAPQPKQ
QQKRMRGQAK*
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mRNA from alignment at chr3:1384825..1386957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04860.1 ID=NO03G04860.1|Name=NO03G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp|location=Sequence derived from alignment at chr3:1384825..1386957- (Nannochloropsis oceanica)
ATGCGGCTGGCTTTGTCCACCCTCACCGCCAGTGCCTTGGTATGGGTCAC GCTGGCACAGCCAGAAGCCTCCCATGGTCGGAGCCCGCACGCCCACCCAG AGCAGAAGTCTGTCGCCACGTCCACCGAGGCATTCAAGCCTATCGACGAG GGTGGTCGACGCCTGGATGCATTTGACGACCGTATGGCCGGCTATGAGCA GAAAGGGAAGTACTGGGAGCAATGGGCCATCGACCACGGCTATGCCCCAG GCCCCAACTCCAAATACGGCAAGCCACCCCAGCAGCAGCAGCAGCAGCAG CAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACA ACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACATC AACAACAACAACAACAGCAGCAGCAGCAGGCCCAGCCCCGTCAACAGGAG CAGTGGGTCTCTACGACGCCCGCCGCCGACGCCGACAAGTTGTCTGTTGG CAATCCTCCGGTTGTAGACTTTGGGAATTTCCTTAACATTGACTTTTACC GGAAAAAGGCCGAGGAACTCGAGGCCTGGGCGCAGCAAGAAGGCATATTG CCCACCTACCAGGGCAGAGCCTCGATGATGGAGCAGCGGCAACGTGCGCG TGCCGAAAGCGACGGTGTAGTAGACATGCCACGCTACTTGACTTCATCCG ACAACGACGAGGAGCCCAAAGTTGATGTGCCGCGCCTCGAGCCTGCCGAA GCGTCTGCTTTTGACGAAGGCGTGAATTACTACAAGGCCCTGAGTGAGTG GCAGCAGAACTACTGGAAAGAGTACGCCAAAGAGTGGGTGGCCTGGAGCC AGCAGCAGGGTCTCTCTCCTTCCTTTCCCTCCCCGAGGGACGCCCCTCGT AAATTGCAGGGGGAAGTAGAGGCGCCACCGAATGACGCGTTCGATGAGCG GATGGAGGAGTATAAAGCTTCGGCTGAGTATTTCGCTGCCCTGAAGGAGT GGCAGAAGGATTACTGGACGGCCTATGGGAAGGGATGGGCGAAGTGGACG GTTGATCAGGGCTATGCTCCCTCTCCCGAGTCAAAGACTTACCACCCGAA GCACGTCGCGGCGGGGGTCCAGGAGATTGCGAAGGATACAGTGGACTCGG CGGCGACGACGACGGCTGAGACCGTGAATCACTACAATGCTGTGGCTAGC CAGGAGACGGATTATTGGCAAGAGCAGGCGCACTACCGCAGGCAAAAGGG TGCGGCCCGTGGACAGGCCTGGGTTGAGTGGGCTCAGCGTCAGGGCTACA TGCCCACACCCGAGAACCCTCCTGAAGAGCAGCCGGTGGTGGCGGCGGAG GATGGAGGGAAGGAGGGCAAGACCAGCCGTCGGCTGGACGCGTTTGATGA TCGCATGGCCAGGTATGAAGCGATTGGAAAATTCGAGGAGCAGTACTGGA AGAAACGGGGGAAGAGCTGGGAGCAGTGGGCGATCGAACAGGGCTATGCT CCTGGGCCAGACTCCAAGTTCGGCAAAGCTGACGCTGCAATCGACCCAGC TCAGGCGGAGGCAGAATTGCACGCGGAGCGAGCGCAGTGGGATGAGCAGC AGAGACAGGAAGAACCGGTCGTGGCGTCGGCGGCGGCAGATAAAGCTGAG GCGATTCGTGGGGATTCGTATCAAACTGAGGGACGGAGCTGGGCCGAGTG GCTCCGTACGCAGACTTTTGGGGAGGACGAGGAGGTGTTGAACATGCAGA GCACGCCAGGCTTCAAGGGCCAGGAGGGACCTGTGCAATCGATCAGGGAG AAGCTACGTATGGACGTGGGGGTGGGAGGCGAGATTTACGCGGCTGTGCC TGAGGAGAGCGTCAGCGATAAGGCGCGGGAGGATGTGTATAAGCACCAAT CTTGGATGGGGCGAAGCGCGACGCGTGTGGTGAATGGAATAGAAAATGGG GCGGGGCATGTGTATTCGGCCGGGGAGCGCCTTGTCTCTCGGGCTGAGGA TGCTGCCAAGTCGGCTGTGGGCGTTGCTACTCCCGCTGCTCCTGTTGCGA TTTCCGAAGAGGCTGCAGCCGAGACGATCCCTGCGCCCCAGCCCAAGCAG CAGCAGAAGCGCATGCGCGGACAGGCCAAGTAG
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Coding sequence (CDS) from alignment at chr3:1384825..1386957-

>NO03G04860.1 ID=NO03G04860.1|Name=NO03G04860.1|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at chr3:1384825..1386957- (Nannochloropsis oceanica)
ATGCGGCTGGCTTTGTCCACCCTCACCGCCAGTGCCTTGGTATGGGTCAC
GCTGGCACAGCCAGAAGCCTCCCATGGTCGGAGCCCGCACGCCCACCCAG
AGCAGAAGTCTGTCGCCACGTCCACCGAGGCATTCAAGCCTATCGACGAG
GGTGGTCGACGCCTGGATGCATTTGACGACCGTATGGCCGGCTATGAGCA
GAAAGGGAAGTACTGGGAGCAATGGGCCATCGACCACGGCTATGCCCCAG
GCCCCAACTCCAAATACGGCAAGCCACCCCAGCAGCAGCAGCAGCAGCAG
CAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACA
ACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACATC
AACAACAACAACAACAGCAGCAGCAGCAGGCCCAGCCCCGTCAACAGGAG
CAGTGGGTCTCTACGACGCCCGCCGCCGACGCCGACAAGTTGTCTGTTGG
CAATCCTCCGGTTGTAGACTTTGGGAATTTCCTTAACATTGACTTTTACC
GGAAAAAGGCCGAGGAACTCGAGGCCTGGGCGCAGCAAGAAGGCATATTG
CCCACCTACCAGGGCAGAGCCTCGATGATGGAGCAGCGGCAACGTGCGCG
TGCCGAAAGCGACGGTGTAGTAGACATGCCACGCTACTTGACTTCATCCG
ACAACGACGAGGAGCCCAAAGTTGATGTGCCGCGCCTCGAGCCTGCCGAA
GCGTCTGCTTTTGACGAAGGCGTGAATTACTACAAGGCCCTGAGTGAGTG
GCAGCAGAACTACTGGAAAGAGTACGCCAAAGAGTGGGTGGCCTGGAGCC
AGCAGCAGGGTCTCTCTCCTTCCTTTCCCTCCCCGAGGGACGCCCCTCGT
AAATTGCAGGGGGAAGTAGAGGCGCCACCGAATGACGCGTTCGATGAGCG
GATGGAGGAGTATAAAGCTTCGGCTGAGTATTTCGCTGCCCTGAAGGAGT
GGCAGAAGGATTACTGGACGGCCTATGGGAAGGGATGGGCGAAGTGGACG
GTTGATCAGGGCTATGCTCCCTCTCCCGAGTCAAAGACTTACCACCCGAA
GCACGTCGCGGCGGGGGTCCAGGAGATTGCGAAGGATACAGTGGACTCGG
CGGCGACGACGACGGCTGAGACCGTGAATCACTACAATGCTGTGGCTAGC
CAGGAGACGGATTATTGGCAAGAGCAGGCGCACTACCGCAGGCAAAAGGG
TGCGGCCCGTGGACAGGCCTGGGTTGAGTGGGCTCAGCGTCAGGGCTACA
TGCCCACACCCGAGAACCCTCCTGAAGAGCAGCCGGTGGTGGCGGCGGAG
GATGGAGGGAAGGAGGGCAAGACCAGCCGTCGGCTGGACGCGTTTGATGA
TCGCATGGCCAGGTATGAAGCGATTGGAAAATTCGAGGAGCAGTACTGGA
AGAAACGGGGGAAGAGCTGGGAGCAGTGGGCGATCGAACAGGGCTATGCT
CCTGGGCCAGACTCCAAGTTCGGCAAAGCTGACGCTGCAATCGACCCAGC
TCAGGCGGAGGCAGAATTGCACGCGGAGCGAGCGCAGTGGGATGAGCAGC
AGAGACAGGAAGAACCGGTCGTGGCGTCGGCGGCGGCAGATAAAGCTGAG
GCGATTCGTGGGGATTCGTATCAAACTGAGGGACGGAGCTGGGCCGAGTG
GCTCCGTACGCAGACTTTTGGGGAGGACGAGGAGGTGTTGAACATGCAGA
GCACGCCAGGCTTCAAGGGCCAGGAGGGACCTGTGCAATCGATCAGGGAG
AAGCTACGTATGGACGTGGGGGTGGGAGGCGAGATTTACGCGGCTGTGCC
TGAGGAGAGCGTCAGCGATAAGGCGCGGGAGGATGTGTATAAGCACCAAT
CTTGGATGGGGCGAAGCGCGACGCGTGTGGTGAATGGAATAGAAAATGGG
GCGGGGCATGTGTATTCGGCCGGGGAGCGCCTTGTCTCTCGGGCTGAGGA
TGCTGCCAAGTCGGCTGTGGGCGTTGCTACTCCCGCTGCTCCTGTTGCGA
TTTCCGAAGAGGCTGCAGCCGAGACGATCCCTGCGCCCCAGCCCAAGCAG
CAGCAGAAGCGCATGCGCGGACAGGCCAAGTAG
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Synonyms
Publications