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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:1384825..1386957 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G04860.1 vs.
Match: EWM29915.1 (hypothetical protein Naga_100035g5 [Nannochloropsis gaditana]) HSP 1 Score: 399.8 bits (1026), Expect = 1.700e-107 Identity = 273/613 (44.54%), Postives = 353/613 (57.59%), Query Frame = 0
Query: 131 QQHQQQQQQQQQQAQP-RQQEQWVSTTPAADADKLSVGNPPVVDFGNFLNIDFYRKKAEELEAWAQQEGILPTYQGRASMMEQRQRARAESDGVVDMPRYLTSSDNDEEPKVDVPRLEPAEASAFDEGVNYYKALSEWQQNYWKEYAKEWVAWSQQQGLSPSFPSPR------------DAPRKLQGEVEAPPNDAFDERMEEYKASAEYFAALKEWQKDYWTAYGKGWAKWTVDQGYAPSPESKTYHPKHVAAGVQEIAKDTVDSAATTTAETVNHYNAVASQETDYWQEQAHYRRQKGAARGQAWVEWAQRQGYMPTPENPPEEQ----PVVAAEDGGK-EGKTSRRLDAFDDRMARYEAIGKFEEQYWKKRGKSWEQWAIEQGYAPGPDSKFGKADAAIDPAQAEAELHAERAQWDEQQRQEEPVVAS----------AAADKAEAIRGDSYQTEGRSWAEWLRTQTFGEDEEVLNMQSTPGFKGQEGPVQSIREKLRMDVGVGGEIYAAVPEESVSDKAREDVYKHQSWMGRSATRVVNGIENGAGHVYSAGERLVSRAEDAAKSAV---GVATPAAPVAISEEAAAETIPAPQPKQ--QQKRMRGQAK 711
++H+ QQ + + +E+WV AA+ + G +F +++ FY KKA +LEAWA+QEG LP++ + +Q E D V D+PR+L D P PA+ + +YYKAL EWQ+ YW+ YAK+WV ++QG PS S R D PR+L E DAFDERMEEYKASA Y AAL EW+K+YWTAYG GWA W D+G+APSP S Y A VQE K D +N ++A+ QE+ YW+EQ+ R++KG ARGQAW++WA ++GYMP PE P E + V GGK E + SRRLDAFDDRMARYEAIG+FE +YWKKRGKSWEQWAI+QGYAPGPDSK+ K AE +L A + Q +QQ+Q++P +A+ DKAEAIRGD Y+ +GR+WAEWLR +TFGE T G++G+ G S K+ DVG G A+ D+A EDVYKHQ+WMGRS RVVNG+E GA H Y+AGER+VSRAE+ + AV P+ P QP Q +Q+ MRG K
Sbjct: 109 KKHETQQALNDRLPETLSSEERWVPM--AANGAQEVFGGASAKEFDTVVDMAFYEKKARDLEAWARQEGRLPSFTHK-QQQKQEIETPEEEDRVRDVPRHLA----DATP--------PAQEAL----TSYYKALGEWQKAYWEAYAKQWVNIGERQGFVPSEKSNRRAATDGDDDDSVDVPRRLG---EEGSGDAFDERMEEYKASAAYLAALGEWEKNYWTAYGDGWAHWAQDRGFAPSPNSNRY------AQVQEDDKSLKDQGF------LNRFDAMVEQESAYWREQSESRKEKGEARGQAWLDWAVQRGYMPPPEGPGEPRGGSDAVAPKTKGGKGEYQGSRRLDAFDDRMARYEAIGQFEAEYWKKRGKSWEQWAIDQGYAPGPDSKYRK--------PAEEDL-AWQQQQQQQQKQQQPTMAANEEGQPMPVGGLDDKAEAIRGDFYKADGRNWAEWLRARTFGEG-SAEEYAPTQGYEGKAGAAHSSAYKIGTDVGADG----AILLNQDIDRAVEDVYKHQTWMGRSTARVVNGMEKGAEHAYAAGERIVSRAENRVEDAVEAYDATVDDRPIGEKTVKVPAEEPVEQPAQAPKQRHMRGAGK 673
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G04860.1 ID=NO03G04860.1|Name=NO03G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp ATGCGGCTGGCTTTGTCCACCCTCACCGCCAGTGCCTTGGTATGGGTCAC GCTGGCACAGCCAGAAGCCTCCCATGGTCGGAGCCCGCACGCCCACCCAG AGCAGAAGTCTGTCGCCACGTCCACCGAGGCATTCAAGCCTATCGACGAG GGTGGTCGACGCCTGGATGCATTTGACGACCGTATGGCCGGCTATGAGCA GAAAGGGAAGTACTGGGAGCAATGGGCCATCGACCACGGCTATGCCCCAG GCCCCAACTCCAAATACGGCAAGCCACCCCAGCAGCAGCAGCAGCAGCAG CAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACA ACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACATC AACAACAACAACAACAGCAGCAGCAGCAGGCCCAGCCCCGTCAACAGGAG CAGTGGGTCTCTACGACGCCCGCCGCCGACGCCGACAAGTTGTCTGTTGG CAATCCTCCGGTTGTAGACTTTGGGAATTTCCTTAACATTGACTTTTACC GGAAAAAGGCCGAGGAACTCGAGGCCTGGGCGCAGCAAGAAGGCATATTG CCCACCTACCAGGGCAGAGCCTCGATGATGGAGCAGCGGCAACGTGCGCG TGCCGAAAGCGACGGTGTAGTAGACATGCCACGCTACTTGACTTCATCCG ACAACGACGAGGAGCCCAAAGTTGATGTGCCGCGCCTCGAGCCTGCCGAA GCGTCTGCTTTTGACGAAGGCGTGAATTACTACAAGGCCCTGAGTGAGTG GCAGCAGAACTACTGGAAAGAGTACGCCAAAGAGTGGGTGGCCTGGAGCC AGCAGCAGGGTCTCTCTCCTTCCTTTCCCTCCCCGAGGGACGCCCCTCGT AAATTGCAGGGGGAAGTAGAGGCGCCACCGAATGACGCGTTCGATGAGCG GATGGAGGAGTATAAAGCTTCGGCTGAGTATTTCGCTGCCCTGAAGGAGT GGCAGAAGGATTACTGGACGGCCTATGGGAAGGGATGGGCGAAGTGGACG GTTGATCAGGGCTATGCTCCCTCTCCCGAGTCAAAGACTTACCACCCGAA GCACGTCGCGGCGGGGGTCCAGGAGATTGCGAAGGATACAGTGGACTCGG CGGCGACGACGACGGCTGAGACCGTGAATCACTACAATGCTGTGGCTAGC CAGGAGACGGATTATTGGCAAGAGCAGGCGCACTACCGCAGGCAAAAGGG TGCGGCCCGTGGACAGGCCTGGGTTGAGTGGGCTCAGCGTCAGGGCTACA TGCCCACACCCGAGAACCCTCCTGAAGAGCAGCCGGTGGTGGCGGCGGAG GATGGAGGGAAGGAGGGCAAGACCAGCCGTCGGCTGGACGCGTTTGATGA TCGCATGGCCAGGTATGAAGCGATTGGAAAATTCGAGGAGCAGTACTGGA AGAAACGGGGGAAGAGCTGGGAGCAGTGGGCGATCGAACAGGGCTATGCT CCTGGGCCAGACTCCAAGTTCGGCAAAGCTGACGCTGCAATCGACCCAGC TCAGGCGGAGGCAGAATTGCACGCGGAGCGAGCGCAGTGGGATGAGCAGC AGAGACAGGAAGAACCGGTCGTGGCGTCGGCGGCGGCAGATAAAGCTGAG GCGATTCGTGGGGATTCGTATCAAACTGAGGGACGGAGCTGGGCCGAGTG GCTCCGTACGCAGACTTTTGGGGAGGACGAGGAGGTGTTGAACATGCAGA GCACGCCAGGCTTCAAGGGCCAGGAGGGACCTGTGCAATCGATCAGGGAG AAGCTACGTATGGACGTGGGGGTGGGAGGCGAGATTTACGCGGCTGTGCC TGAGGAGAGCGTCAGCGATAAGGCGCGGGAGGATGTGTATAAGCACCAAT CTTGGATGGGGCGAAGCGCGACGCGTGTGGTGAATGGAATAGAAAATGGG GCGGGGCATGTGTATTCGGCCGGGGAGCGCCTTGTCTCTCGGGCTGAGGA TGCTGCCAAGTCGGCTGTGGGCGTTGCTACTCCCGCTGCTCCTGTTGCGA TTTCCGAAGAGGCTGCAGCCGAGACGATCCCTGCGCCCCAGCCCAAGCAG CAGCAGAAGCGCATGCGCGGACAGGCCAAGTAG back to topprotein sequence of NO03G04860.1 >NO03G04860.1-protein ID=NO03G04860.1-protein|Name=NO03G04860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp MRLALSTLTASALVWVTLAQPEASHGRSPHAHPEQKSVATSTEAFKPIDE GGRRLDAFDDRMAGYEQKGKYWEQWAIDHGYAPGPNSKYGKPPQQQQQQQ QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQAQPRQQE QWVSTTPAADADKLSVGNPPVVDFGNFLNIDFYRKKAEELEAWAQQEGIL PTYQGRASMMEQRQRARAESDGVVDMPRYLTSSDNDEEPKVDVPRLEPAE ASAFDEGVNYYKALSEWQQNYWKEYAKEWVAWSQQQGLSPSFPSPRDAPR KLQGEVEAPPNDAFDERMEEYKASAEYFAALKEWQKDYWTAYGKGWAKWT VDQGYAPSPESKTYHPKHVAAGVQEIAKDTVDSAATTTAETVNHYNAVAS QETDYWQEQAHYRRQKGAARGQAWVEWAQRQGYMPTPENPPEEQPVVAAE DGGKEGKTSRRLDAFDDRMARYEAIGKFEEQYWKKRGKSWEQWAIEQGYA PGPDSKFGKADAAIDPAQAEAELHAERAQWDEQQRQEEPVVASAAADKAE AIRGDSYQTEGRSWAEWLRTQTFGEDEEVLNMQSTPGFKGQEGPVQSIRE KLRMDVGVGGEIYAAVPEESVSDKAREDVYKHQSWMGRSATRVVNGIENG AGHVYSAGERLVSRAEDAAKSAVGVATPAAPVAISEEAAAETIPAPQPKQ QQKRMRGQAK* back to topmRNA from alignment at chr3:1384825..1386957- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G04860.1 ID=NO03G04860.1|Name=NO03G04860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2133bp|location=Sequence derived from alignment at chr3:1384825..1386957- (Nannochloropsis oceanica) ATGCGGCTGGCTTTGTCCACCCTCACCGCCAGTGCCTTGGTATGGGTCAC
GCTGGCACAGCCAGAAGCCTCCCATGGTCGGAGCCCGCACGCCCACCCAG
AGCAGAAGTCTGTCGCCACGTCCACCGAGGCATTCAAGCCTATCGACGAG
GGTGGTCGACGCCTGGATGCATTTGACGACCGTATGGCCGGCTATGAGCA
GAAAGGGAAGTACTGGGAGCAATGGGCCATCGACCACGGCTATGCCCCAG
GCCCCAACTCCAAATACGGCAAGCCACCCCAGCAGCAGCAGCAGCAGCAG
CAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACA
ACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACATC
AACAACAACAACAACAGCAGCAGCAGCAGGCCCAGCCCCGTCAACAGGAG
CAGTGGGTCTCTACGACGCCCGCCGCCGACGCCGACAAGTTGTCTGTTGG
CAATCCTCCGGTTGTAGACTTTGGGAATTTCCTTAACATTGACTTTTACC
GGAAAAAGGCCGAGGAACTCGAGGCCTGGGCGCAGCAAGAAGGCATATTG
CCCACCTACCAGGGCAGAGCCTCGATGATGGAGCAGCGGCAACGTGCGCG
TGCCGAAAGCGACGGTGTAGTAGACATGCCACGCTACTTGACTTCATCCG
ACAACGACGAGGAGCCCAAAGTTGATGTGCCGCGCCTCGAGCCTGCCGAA
GCGTCTGCTTTTGACGAAGGCGTGAATTACTACAAGGCCCTGAGTGAGTG
GCAGCAGAACTACTGGAAAGAGTACGCCAAAGAGTGGGTGGCCTGGAGCC
AGCAGCAGGGTCTCTCTCCTTCCTTTCCCTCCCCGAGGGACGCCCCTCGT
AAATTGCAGGGGGAAGTAGAGGCGCCACCGAATGACGCGTTCGATGAGCG
GATGGAGGAGTATAAAGCTTCGGCTGAGTATTTCGCTGCCCTGAAGGAGT
GGCAGAAGGATTACTGGACGGCCTATGGGAAGGGATGGGCGAAGTGGACG
GTTGATCAGGGCTATGCTCCCTCTCCCGAGTCAAAGACTTACCACCCGAA
GCACGTCGCGGCGGGGGTCCAGGAGATTGCGAAGGATACAGTGGACTCGG
CGGCGACGACGACGGCTGAGACCGTGAATCACTACAATGCTGTGGCTAGC
CAGGAGACGGATTATTGGCAAGAGCAGGCGCACTACCGCAGGCAAAAGGG
TGCGGCCCGTGGACAGGCCTGGGTTGAGTGGGCTCAGCGTCAGGGCTACA
TGCCCACACCCGAGAACCCTCCTGAAGAGCAGCCGGTGGTGGCGGCGGAG
GATGGAGGGAAGGAGGGCAAGACCAGCCGTCGGCTGGACGCGTTTGATGA
TCGCATGGCCAGGTATGAAGCGATTGGAAAATTCGAGGAGCAGTACTGGA
AGAAACGGGGGAAGAGCTGGGAGCAGTGGGCGATCGAACAGGGCTATGCT
CCTGGGCCAGACTCCAAGTTCGGCAAAGCTGACGCTGCAATCGACCCAGC
TCAGGCGGAGGCAGAATTGCACGCGGAGCGAGCGCAGTGGGATGAGCAGC
AGAGACAGGAAGAACCGGTCGTGGCGTCGGCGGCGGCAGATAAAGCTGAG
GCGATTCGTGGGGATTCGTATCAAACTGAGGGACGGAGCTGGGCCGAGTG
GCTCCGTACGCAGACTTTTGGGGAGGACGAGGAGGTGTTGAACATGCAGA
GCACGCCAGGCTTCAAGGGCCAGGAGGGACCTGTGCAATCGATCAGGGAG
AAGCTACGTATGGACGTGGGGGTGGGAGGCGAGATTTACGCGGCTGTGCC
TGAGGAGAGCGTCAGCGATAAGGCGCGGGAGGATGTGTATAAGCACCAAT
CTTGGATGGGGCGAAGCGCGACGCGTGTGGTGAATGGAATAGAAAATGGG
GCGGGGCATGTGTATTCGGCCGGGGAGCGCCTTGTCTCTCGGGCTGAGGA
TGCTGCCAAGTCGGCTGTGGGCGTTGCTACTCCCGCTGCTCCTGTTGCGA
TTTCCGAAGAGGCTGCAGCCGAGACGATCCCTGCGCCCCAGCCCAAGCAG
CAGCAGAAGCGCATGCGCGGACAGGCCAAGTAG back to topCoding sequence (CDS) from alignment at chr3:1384825..1386957- >NO03G04860.1 ID=NO03G04860.1|Name=NO03G04860.1|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at chr3:1384825..1386957- (Nannochloropsis oceanica) ATGCGGCTGGCTTTGTCCACCCTCACCGCCAGTGCCTTGGTATGGGTCAC GCTGGCACAGCCAGAAGCCTCCCATGGTCGGAGCCCGCACGCCCACCCAG AGCAGAAGTCTGTCGCCACGTCCACCGAGGCATTCAAGCCTATCGACGAG GGTGGTCGACGCCTGGATGCATTTGACGACCGTATGGCCGGCTATGAGCA GAAAGGGAAGTACTGGGAGCAATGGGCCATCGACCACGGCTATGCCCCAG GCCCCAACTCCAAATACGGCAAGCCACCCCAGCAGCAGCAGCAGCAGCAG CAACAACAACAACAACAACAACAACAACAGCAACAACAACAGCAACAACA ACAACAACAACAACAACAACAACAACAACAGCAACAACAACAACAACATC AACAACAACAACAACAGCAGCAGCAGCAGGCCCAGCCCCGTCAACAGGAG CAGTGGGTCTCTACGACGCCCGCCGCCGACGCCGACAAGTTGTCTGTTGG CAATCCTCCGGTTGTAGACTTTGGGAATTTCCTTAACATTGACTTTTACC GGAAAAAGGCCGAGGAACTCGAGGCCTGGGCGCAGCAAGAAGGCATATTG CCCACCTACCAGGGCAGAGCCTCGATGATGGAGCAGCGGCAACGTGCGCG TGCCGAAAGCGACGGTGTAGTAGACATGCCACGCTACTTGACTTCATCCG ACAACGACGAGGAGCCCAAAGTTGATGTGCCGCGCCTCGAGCCTGCCGAA GCGTCTGCTTTTGACGAAGGCGTGAATTACTACAAGGCCCTGAGTGAGTG GCAGCAGAACTACTGGAAAGAGTACGCCAAAGAGTGGGTGGCCTGGAGCC AGCAGCAGGGTCTCTCTCCTTCCTTTCCCTCCCCGAGGGACGCCCCTCGT AAATTGCAGGGGGAAGTAGAGGCGCCACCGAATGACGCGTTCGATGAGCG GATGGAGGAGTATAAAGCTTCGGCTGAGTATTTCGCTGCCCTGAAGGAGT GGCAGAAGGATTACTGGACGGCCTATGGGAAGGGATGGGCGAAGTGGACG GTTGATCAGGGCTATGCTCCCTCTCCCGAGTCAAAGACTTACCACCCGAA GCACGTCGCGGCGGGGGTCCAGGAGATTGCGAAGGATACAGTGGACTCGG CGGCGACGACGACGGCTGAGACCGTGAATCACTACAATGCTGTGGCTAGC CAGGAGACGGATTATTGGCAAGAGCAGGCGCACTACCGCAGGCAAAAGGG TGCGGCCCGTGGACAGGCCTGGGTTGAGTGGGCTCAGCGTCAGGGCTACA TGCCCACACCCGAGAACCCTCCTGAAGAGCAGCCGGTGGTGGCGGCGGAG GATGGAGGGAAGGAGGGCAAGACCAGCCGTCGGCTGGACGCGTTTGATGA TCGCATGGCCAGGTATGAAGCGATTGGAAAATTCGAGGAGCAGTACTGGA AGAAACGGGGGAAGAGCTGGGAGCAGTGGGCGATCGAACAGGGCTATGCT CCTGGGCCAGACTCCAAGTTCGGCAAAGCTGACGCTGCAATCGACCCAGC TCAGGCGGAGGCAGAATTGCACGCGGAGCGAGCGCAGTGGGATGAGCAGC AGAGACAGGAAGAACCGGTCGTGGCGTCGGCGGCGGCAGATAAAGCTGAG GCGATTCGTGGGGATTCGTATCAAACTGAGGGACGGAGCTGGGCCGAGTG GCTCCGTACGCAGACTTTTGGGGAGGACGAGGAGGTGTTGAACATGCAGA GCACGCCAGGCTTCAAGGGCCAGGAGGGACCTGTGCAATCGATCAGGGAG AAGCTACGTATGGACGTGGGGGTGGGAGGCGAGATTTACGCGGCTGTGCC TGAGGAGAGCGTCAGCGATAAGGCGCGGGAGGATGTGTATAAGCACCAAT CTTGGATGGGGCGAAGCGCGACGCGTGTGGTGAATGGAATAGAAAATGGG GCGGGGCATGTGTATTCGGCCGGGGAGCGCCTTGTCTCTCGGGCTGAGGA TGCTGCCAAGTCGGCTGTGGGCGTTGCTACTCCCGCTGCTCCTGTTGCGA TTTCCGAAGAGGCTGCAGCCGAGACGATCCCTGCGCCCCAGCCCAAGCAG CAGCAGAAGCGCATGCGCGGACAGGCCAAGTAG back to top
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