NO03G04840.1, NO03G04840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04840.1
Unique NameNO03G04840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1534
Alignment locationchr3:1380544..1382077 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1380544..1382077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04840.1 vs.
Match: EWM29891.1 (hypothetical protein Naga_100035g8 [Nannochloropsis gaditana])

HSP 1 Score: 369.0 bits (946), Expect = 1.500e-98
Identity = 219/333 (65.77%), Postives = 255/333 (76.58%), Query Frame = 0 
Query:    1 MGKTSTAAAKRSTTSRAMTVSSS-RSDKELTIMPS--TELQDLDSLANQMEEQLMQEFEALLTARRKQEIDGADSKIGALKTSAGASGSSFGNKDQDARDALYWKHMYERLRDLRETDAERLLRETVQHSEEREKSLLDVIAHLEAGGETGNGGKA---GAKVDVRLSDVSMCGVVRGGGGSEYTSGAATDTDGQEIDVVEMNKEVMAEKEARIASLEGKIADLKRVLMAYQRFTSLCMTMERKASGPGGVSKLSCTAINHVHKKAVKFSLKMNVDVEDNLGMDATFRPVANKELLPQFLQQEATLETKQCPLLLLSILKTLFDEKKNGAGKE 328
            MGKT+T   KRS TS+    SSS RS KEL I  S   ELQDL +LA QMEEQLMQEFE LL+ARRK+E  GA         +AG +G+  G+KDQDARDALYWKHMYERLRDLRETDAERLLRE+VQH++ERE+SLLD+I+HLE GG T    ++     K+DVRLSDVS+C           T   A +  GQ  +   +  +   E +A+IA+L+GK++DLKR+L+AYQRFTSLC++MER+AS PGG+SKLSCTAINHVHKKAVKFSLKMNVDVED+  MDATFRP ANKEL P FLQQEATLETKQCPLLLLSILKTLFDEKKNGAGKE
Sbjct:    1 MGKTTT---KRSMTSKVGKPSSSTRSSKELMIPSSETVELQDLSTLAKQMEEQLMQEFEVLLSARRKKENSGAVGN----SLNAGITGNR-GDKDQDARDALYWKHMYERLRDLRETDAERLLRESVQHADERERSLLDLISHLEEGGATDGARRSRSKSGKMDVRLSDVSLCEF-----SGRDTRSTAMEVGGQS-EAKAVGHQDTRELQAQIATLQGKLSDLKRILIAYQRFTSLCISMEREASAPGGMSKLSCTAINHVHKKAVKFSLKMNVDVEDSSNMDATFRPEANKELFPPFLQQEATLETKQCPLLLLSILKTLFDEKKNGAGKE 319
The following BLAST results are available for this feature:
BLAST of NO03G04840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29891.11.500e-9865.77hypothetical protein Naga_100035g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04840NO03G04840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04840.1NO03G04840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04840.1.cds1NO03G04840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04840.1 ID=NO03G04840.1|Name=NO03G04840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp
ACAGGGCCACAATACAAGCAACACACCGCGACGATGGGAAAGACGTCAAC
CGCCGCAGCTAAGCGATCGACCACTTCCAGGGCCATGACTGTAAGCAGCA
GCAGGAGTGACAAGGAGCTGACAATAATGCCCTCGACCGAGCTTCAGGAC
CTTGATTCGCTCGCCAATCAAATGGAGGAGCAGCTCATGCAGGAATTTGA
GGCCTTATTGACAGCGAGACGTAAACAAGAGATTGATGGAGCGGACAGCA
AGATTGGAGCATTGAAAACGTCTGCTGGCGCTAGCGGTAGCAGTTTCGGG
AACAAGGACCAAGATGCCCGCGATGCCTTGTACTGGAAGCATATGTACGA
ACGCCTGCGCGACTTGCGGGAAACGGACGCTGAGCGTTTGTTGCGGGAGA
CGGTGCAGCATTCGGAAGAACGGGAAAAGTCGTTATTAGACGTGATTGCG
CATCTGGAGGCAGGCGGCGAGACGGGTAATGGTGGCAAGGCCGGGGCCAA
GGTGGACGTACGGTTGAGCGACGTGTCTATGTGTGGGGTGGTGAGAGGAG
GTGGGGGTAGTGAATACACATCAGGGGCGGCGACGGATACGGATGGACAG
GAAATCGATGTAGTGGAGATGAACAAGGAGGTCATGGCGGAGAAGGAGGC
ACGAATTGCCTCATTGGAGGGGAAAATAGCGGATTTGAAGCGGGTCTTGA
TGGCTTACCAACGCTTTACTTCCTTGTGTATGACAATGGAACGTAAGGCG
TCTGGCCCCGGAGGAGTAAGCAAATTGAGCTGTACGGCTATAAATCACGT
GCATAAAAAGGCGGTGAAGTTTTCGTTGAAAATGAACGTGGACGTGGAGG
ATAATTTGGGGATGGACGCGACATTCCGACCGGTGGCGAACAAGGAGTTG
TTGCCGCAGTTTTTGCAGCAGGAGGCGACTCTGGAGACGAAGCAATGCCC
GTTGCTCTTGTTGTCGATCTTGAAGACATTGTTTGACGAAAAGAAGAATG
GGGCGGGAAAAGAATAGAAGAATGCGGGTAATGCGCAAGACAGGATAGAG
AGTGTGTATGAGTGAGCGGGTGGATTCCAAAAAGCTGGTTGGGTGGATAC
GGGAAAAGGGAGATGATATGTGTATTAAAGAGAAATTTAAAAAGTCGAAA
CTTTGTCCTCTTCCTTTAAATATTGAGCAGGAGAAGGAGGACACATGACA
GGTTTATATTGGGATTCCACGAGGTGGCTTGTTGAGAGAGCGTGCAGCAT
CTAGCTATGGCTGCCTAGTGAATGAAATGCACGATTCAAAAGCGCGCCTG
GAGCCTGGAGAAAATAAAGGACCAGCCCTTGAAATGGGTTGCGAGTCAAT
CGAAGACAGGTAGACGATGAGGATGACGGTACGATTATATTTAATGTGAC
TGTTTGTACGTATGGCTAAGGAGAAGGAACGGCGAGAAGAAAACAACCAA
AAAAAGAAAAAGAAAAAAAGGGTTGGAGGGGAAAGAGTTGACAGTAGAAC
GAAAAGAGGGAAAACAGAGAAATCTGTCCAGCCC
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protein sequence of NO03G04840.1

>NO03G04840.1-protein ID=NO03G04840.1-protein|Name=NO03G04840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MGKTSTAAAKRSTTSRAMTVSSSRSDKELTIMPSTELQDLDSLANQMEEQ
LMQEFEALLTARRKQEIDGADSKIGALKTSAGASGSSFGNKDQDARDALY
WKHMYERLRDLRETDAERLLRETVQHSEEREKSLLDVIAHLEAGGETGNG
GKAGAKVDVRLSDVSMCGVVRGGGGSEYTSGAATDTDGQEIDVVEMNKEV
MAEKEARIASLEGKIADLKRVLMAYQRFTSLCMTMERKASGPGGVSKLSC
TAINHVHKKAVKFSLKMNVDVEDNLGMDATFRPVANKELLPQFLQQEATL
ETKQCPLLLLSILKTLFDEKKNGAGKE*
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mRNA from alignment at chr3:1380544..1382077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04840.1 ID=NO03G04840.1|Name=NO03G04840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at chr3:1380544..1382077+ (Nannochloropsis oceanica)
ACAGGGCCACAATACAAGCAACACACCGCGACGATGGGAAAGACGTCAAC
CGCCGCAGCTAAGCGATCGACCACTTCCAGGGCCATGACTGTAAGCAGCA
GCAGGAGTGACAAGGAGCTGACAATAATGCCCTCGACCGAGCTTCAGGAC
CTTGATTCGCTCGCCAATCAAATGGAGGAGCAGCTCATGCAGGAATTTGA
GGCCTTATTGACAGCGAGACGTAAACAAGAGATTGATGGAGCGGACAGCA
AGATTGGAGCATTGAAAACGTCTGCTGGCGCTAGCGGTAGCAGTTTCGGG
AACAAGGACCAAGATGCCCGCGATGCCTTGTACTGGAAGCATATGTACGA
ACGCCTGCGCGACTTGCGGGAAACGGACGCTGAGCGTTTGTTGCGGGAGA
CGGTGCAGCATTCGGAAGAACGGGAAAAGTCGTTATTAGACGTGATTGCG
CATCTGGAGGCAGGCGGCGAGACGGGTAATGGTGGCAAGGCCGGGGCCAA
GGTGGACGTACGGTTGAGCGACGTGTCTATGTGTGGGGTGGTGAGAGGAG
GTGGGGGTAGTGAATACACATCAGGGGCGGCGACGGATACGGATGGACAG
GAAATCGATGTAGTGGAGATGAACAAGGAGGTCATGGCGGAGAAGGAGGC
ACGAATTGCCTCATTGGAGGGGAAAATAGCGGATTTGAAGCGGGTCTTGA
TGGCTTACCAACGCTTTACTTCCTTGTGTATGACAATGGAACGTAAGGCG
TCTGGCCCCGGAGGAGTAAGCAAATTGAGCTGTACGGCTATAAATCACGT
GCATAAAAAGGCGGTGAAGTTTTCGTTGAAAATGAACGTGGACGTGGAGG
ATAATTTGGGGATGGACGCGACATTCCGACCGGTGGCGAACAAGGAGTTG
TTGCCGCAGTTTTTGCAGCAGGAGGCGACTCTGGAGACGAAGCAATGCCC
GTTGCTCTTGTTGTCGATCTTGAAGACATTGTTTGACGAAAAGAAGAATG
GGGCGGGAAAAGAATAGAAGAATGCGGGTAATGCGCAAGACAGGATAGAG
AGTGTGTATGAGTGAGCGGGTGGATTCCAAAAAGCTGGTTGGGTGGATAC
GGGAAAAGGGAGATGATATGTGTATTAAAGAGAAATTTAAAAAGTCGAAA
CTTTGTCCTCTTCCTTTAAATATTGAGCAGGAGAAGGAGGACACATGACA
GGTTTATATTGGGATTCCACGAGGTGGCTTGTTGAGAGAGCGTGCAGCAT
CTAGCTATGGCTGCCTAGTGAATGAAATGCACGATTCAAAAGCGCGCCTG
GAGCCTGGAGAAAATAAAGGACCAGCCCTTGAAATGGGTTGCGAGTCAAT
CGAAGACAGGTAGACGATGAGGATGACGGTACGATTATATTTAATGTGAC
TGTTTGTACGTATGGCTAAGGAGAAGGAACGGCGAGAAGAAAACAACCAA
AAAAAGAAAAAGAAAAAAAGGGTTGGAGGGGAAAGAGTTGACAGTAGAAC
GAAAAGAGGGAAAACAGAGAAATCTGTCCAGCCC
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Coding sequence (CDS) from alignment at chr3:1380544..1382077+

>NO03G04840.1 ID=NO03G04840.1|Name=NO03G04840.1|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at chr3:1380544..1382077+ (Nannochloropsis oceanica)
ATGGGAAAGACGTCAACCGCCGCAGCTAAGCGATCGACCACTTCCAGGGC
CATGACTGTAAGCAGCAGCAGGAGTGACAAGGAGCTGACAATAATGCCCT
CGACCGAGCTTCAGGACCTTGATTCGCTCGCCAATCAAATGGAGGAGCAG
CTCATGCAGGAATTTGAGGCCTTATTGACAGCGAGACGTAAACAAGAGAT
TGATGGAGCGGACAGCAAGATTGGAGCATTGAAAACGTCTGCTGGCGCTA
GCGGTAGCAGTTTCGGGAACAAGGACCAAGATGCCCGCGATGCCTTGTAC
TGGAAGCATATGTACGAACGCCTGCGCGACTTGCGGGAAACGGACGCTGA
GCGTTTGTTGCGGGAGACGGTGCAGCATTCGGAAGAACGGGAAAAGTCGT
TATTAGACGTGATTGCGCATCTGGAGGCAGGCGGCGAGACGGGTAATGGT
GGCAAGGCCGGGGCCAAGGTGGACGTACGGTTGAGCGACGTGTCTATGTG
TGGGGTGGTGAGAGGAGGTGGGGGTAGTGAATACACATCAGGGGCGGCGA
CGGATACGGATGGACAGGAAATCGATGTAGTGGAGATGAACAAGGAGGTC
ATGGCGGAGAAGGAGGCACGAATTGCCTCATTGGAGGGGAAAATAGCGGA
TTTGAAGCGGGTCTTGATGGCTTACCAACGCTTTACTTCCTTGTGTATGA
CAATGGAACGTAAGGCGTCTGGCCCCGGAGGAGTAAGCAAATTGAGCTGT
ACGGCTATAAATCACGTGCATAAAAAGGCGGTGAAGTTTTCGTTGAAAAT
GAACGTGGACGTGGAGGATAATTTGGGGATGGACGCGACATTCCGACCGG
TGGCGAACAAGGAGTTGTTGCCGCAGTTTTTGCAGCAGGAGGCGACTCTG
GAGACGAAGCAATGCCCGTTGCTCTTGTTGTCGATCTTGAAGACATTGTT
TGACGAAAAGAAGAATGGGGCGGGAAAAGAATAG
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Synonyms
Publications