NO03G04770.1, NO03G04770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04770.1
Unique NameNO03G04770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2365
Alignment locationchr3:1355200..1357991 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1355200..1357991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04770.1 vs.
Match: EWM29897.1 (glutaredoxin 3 [Nannochloropsis gaditana])

HSP 1 Score: 525.0 bits (1351), Expect = 1.900e-145
Identity = 267/370 (72.16%), Postives = 304/370 (82.16%), Query Frame = 0 
Query:    1 MEGSSTGRVVDVMSKAQWDALLKDGIPAVAFFWADWHEPSKLQGQMDLVFTHLAALHPSLHFFRVEAEAVPDVSVIFSIAVVPTFVFLREGKITDKQEGAHSAELAKKVQAFAAAAASLPPPTSAGVDASIQQQQQQQQQPLTGTDGSLENRLKRLITQAPVVVFMKGSPSNPRCGFSRSLVELLKSEQIAFASFDILEDNEVRQGLKVYSDWKTYPQLYVNGELVGGLDIVKEMVVEGGNSGRLKEELGIKDVPLSSVPSASSAPSSAPSLETRLTALINKAPVMLFMKGDPATPRCGFSNQMVSILQKAGVAFDTFDILSDEEVRQGLKKLSQWPTYPQLYVKGELIGGLDIVKELQETGELESALKG 371
            M  +    V+DVMSKAQWD LLKD  P VAFFWADWHEPSK QGQMD VFTHLAALHPSL F RVEAEAVP+VSV+F I+VVP+FVF ++GK+ DKQEGAH AELAKK+Q+ +AAAA+L   T       +       ++  +G+ G L +RLK LITQAPVV+FMKGS SNPRCGFSRS+VELLK+E+IAFASFDIL+D+EVRQGLK YSDWKTYPQLYVNGELVGGLDIVKEMVVEG  SGRLKE LGIK++P S    A+S       LETRL AL+N APVMLFMKGDPA P+CGFSNQMVSIL+K GVAF +FDIL DEEVRQGLKK+SQWPTYPQLYVKGEL+GGLDIVKE++E GEL+SALKG
Sbjct:    1 MTANGAREVIDVMSKAQWDTLLKDDFPTVAFFWADWHEPSKPQGQMDSVFTHLAALHPSLRFLRVEAEAVPEVSVLFGISVVPSFVFFQKGKVADKQEGAHPAELAKKIQSLSAAAAALSTRTGNSDAVLVAANATTVKETASGSTGGLNHRLKALITQAPVVLFMKGSSSNPRCGFSRSMVELLKTEKIAFASFDILQDDEVRQGLKDYSDWKTYPQLYVNGELVGGLDIVKEMVVEGA-SGRLKEALGIKELPES---DAASPADDVNPLETRLKALVNAAPVMLFMKGDPAAPKCGFSNQMVSILKKTGVAFQSFDILQDEEVRQGLKKISQWPTYPQLYVKGELVGGLDIVKEMEEGGELDSALKG 366
The following BLAST results are available for this feature:
BLAST of NO03G04770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29897.11.900e-14572.16glutaredoxin 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04770NO03G04770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04770.1NO03G04770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04770.1.cds1NO03G04770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G04770.1.cds2NO03G04770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04770.1 ID=NO03G04770.1|Name=NO03G04770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2365bp
ATTGAAAGCTCGGCTCGCAACTTCATACTTTTACACTCGTTCATGTTAGA
AAAGCATGTGCGGAAATTGGGGTGTGTTCGACTCCGCACCCGTAACTAGC
AGCCATTCTTAAATATTCATTTGAGATTTCTACGTAAGTGCTGGCCCAGG
TGTGTGTTCGACGGGGAGGATAACCTTAAATAGCAAAGGCATCCTTAAAT
AGCGAAAGAAACCCTAAAATTGCGAAAGCAAGCCCATTCACAAGCATAAG
CGAGACCCAGGAGTCCATTATCAACATGTCCATGTGTTTCTTGTCCTCCT
GCCAAGTGGCCCCCAAGGGCCCAATAATTTAAAACTCTTTAAATTCTCAC
ATGCAAGGCTTCAAGGCATTTGCCAACATGATGCCCTTTACGACCTCTTC
TTTCCTCTTTCCTCACACAGACACATTCACATACACAAAATTGTCTTGAG
GAGTCTGCGAAGGCAGAGTGGCGCTTGGTCTATCCAACATGGACCCACAC
ATGATGGATGTTGATGACAAAGACAACATCGTGATCGTCGTGGCCCTTCC
GTACATGTACCTCTTTGAAGGACACTAGCTTCCCAGTGCGTCTTGGAATC
TGAATCCAAACCGACCTCGTACATAGCCGCAGCTCTTCGACGACTTTGCT
GATGATATGTTCCTGACGATGCACCGGTTTACCAAGGAGCAGGTGTGGTA
CCATGCTCCGTATGGTACATGCTCCCCAGACTCCGCATCGACACAGTTGT
CGAGTTAGAAGGGTAAGCACTTATGGCTAATGTTGACTGTCTTGCACACG
CTAATCTTCCCAAAGGCACAGGCTGTGGTTCTAGACCTTTAACTGGCTCT
CCCCCTCTCGTACCGTTTACCTCATCGCCCGCCTAATAACATGGGAAGGA
TGCAAAAAATGTGTGGAGGGATGGTGTTTGTGATGCCTCTTGGCCGCAAT
GCCCATCCTTACTCTACTCGAGGCGCATTGGAAAAAGTTGTACGGACATG
ACCGCACACAAATAACAAAATGGACAAATTACATGCTGGAGTACCTCGGC
AACTGCGCATCATATCGCCCATCGCTTGTTCCCGGTCCTTCTTCCGGTTT
GCTTCCCTCGCAAAGTCACGCTGCGCAAACAACACACAAACCCACAGCAC
CTCATCGCGACCATCACTATGGAGGGAAGCAGCACCGGTCGGGTTGTCGA
CGTCATGTCCAAGGCGCAATGGGATGCCTTGCTCAAAGATGGCATCCCTG
CCGTTGCCTTCTTCTGGGCCGACTGGCACGAACCATCCAAGCTTCAAGGG
CAAATGGACTTAGTTTTCACGCACCTCGCCGCTCTTCACCCCTCTCTCCA
CTTTTTCCGGGTGGAGGCCGAGGCCGTACCAGACGTCTCCGTCATCTTTA
GCATAGCCGTCGTTCCCACCTTCGTCTTTCTCCGGGAAGGCAAGATTACA
GACAAACAAGAAGGAGCACACTCTGCCGAGCTAGCTAAGAAAGTCCAGGC
TTTTGCCGCAGCAGCTGCTTCCTTGCCACCCCCCACTTCCGCCGGTGTCG
ACGCTTCCATACAGCAGCAGCAGCAGCAACAGCAGCAACCTCTCACTGGC
ACGGACGGCAGCCTTGAGAACCGTCTCAAGCGGTTAATCACCCAAGCTCC
CGTGGTGGTCTTTATGAAGGGCTCTCCCTCAAACCCTCGTTGCGGCTTCT
CCCGCTCGCTTGTCGAGCTGCTTAAATCTGAACAAATCGCCTTTGCCTCT
TTCGACATTTTGGAAGACAATGAGGTGAGACAAGGGTTGAAAGTCTACTC
GGACTGGAAGACCTACCCTCAGCTTTACGTCAACGGCGAGCTCGTAGGTG
GGTTAGACATAGTGAAAGAAATGGTGGTGGAGGGAGGGAACTCGGGTCGC
CTCAAGGAAGAGCTGGGCATTAAGGACGTCCCTCTTTCCTCCGTTCCCTC
CGCCTCTTCTGCCCCCTCCTCCGCCCCCTCCCTCGAAACCCGCCTCACGG
CGCTTATCAACAAGGCCCCAGTCATGCTCTTTATGAAAGGAGATCCCGCG
ACACCCAGGTGTGGGTTTAGCAACCAGATGGTATCGATTTTGCAAAAAGC
AGGCGTGGCCTTTGATACCTTCGACATCCTTAGCGACGAGGAAGTGAGGC
AAGGGTTGAAGAAGCTCTCGCAGTGGCCGACCTATCCCCAGTTGTACGTG
AAAGGGGAATTGATCGGAGGGTTGGACATTGTGAAGGAACTGCAGGAGAC
GGGGGAGTTAGAGAGTGCCTTGAAGGGTTAGAGGGGAGGGAGGGAGGGAA
GGGGAAGGGAGGGATGCAAGGAAGGGAGGATATTGAAATGAAGGAAGAGG
AGTAACAAAGTGCAC
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protein sequence of NO03G04770.1

>NO03G04770.1-protein ID=NO03G04770.1-protein|Name=NO03G04770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MEGSSTGRVVDVMSKAQWDALLKDGIPAVAFFWADWHEPSKLQGQMDLVF
THLAALHPSLHFFRVEAEAVPDVSVIFSIAVVPTFVFLREGKITDKQEGA
HSAELAKKVQAFAAAAASLPPPTSAGVDASIQQQQQQQQQPLTGTDGSLE
NRLKRLITQAPVVVFMKGSPSNPRCGFSRSLVELLKSEQIAFASFDILED
NEVRQGLKVYSDWKTYPQLYVNGELVGGLDIVKEMVVEGGNSGRLKEELG
IKDVPLSSVPSASSAPSSAPSLETRLTALINKAPVMLFMKGDPATPRCGF
SNQMVSILQKAGVAFDTFDILSDEEVRQGLKKLSQWPTYPQLYVKGELIG
GLDIVKELQETGELESALKG*
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mRNA from alignment at chr3:1355200..1357991+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04770.1 ID=NO03G04770.1|Name=NO03G04770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2792bp|location=Sequence derived from alignment at chr3:1355200..1357991+ (Nannochloropsis oceanica)
ATTGAAAGCTCGGCTCGCAACTTCATACTTTTACACTCGTTCATGTTAGA
AAAGCATGTGCGGAAATTGGGGTGTGTTCGACTCCGCACCCGTAACTAGC
AGCCATTCTTAAATATTCATTTGAGATTTCTACGTAAGTGCTGGCCCAGG
TGTGTGTTCGACGGGGAGGATAACCTTAAATAGCAAAGGCATCCTTAAAT
AGCGAAAGAAACCCTAAAATTGCGAAAGCAAGCCCATTCACAAGCATAAG
CGAGACCCAGGAGTCCATTATCAACATGTCCATGTGTTTCTTGTCCTCCT
GCCAAGTGGCCCCCAAGGGCCCAATAATTTAAAACTCTTTAAATTCTCAC
ATGCAAGGCTTCAAGGCATTTGCCAACATGATGCCCTTTACGACCTCTTC
TTTCCTCTTTCCTCACACAGACACATTCACATACACAAAATTGTCTTGAG
GAGTCTGCGAAGGCAGAGTGGCGCTTGGTCTATCCAACATGGACCCACAC
ATGATGGATGTTGATGACAAAGACAACATCGTGATCGTCGTGGCCCTTCC
GTACATGTACCTCTTTGAAGGACACTAGCTTCCCAGTGCGTCTTGGAATC
TGAATCCAAACCGACCTCGTACATAGCCGCAGCTCTTCGACGACTTTGCT
GATGATATGTTCCTGACGATGCACCGGTTTACCAAGGAGCAGGTGTGGTA
CCATGCTCCGTATGGTACATGCTCCCCAGACTCCGCATCGACACAGTTGT
CGAGTTAGAAGGGTAAGCACTTATGGCTAATGTTGACTGTCTTGCACACG
CTAATCTTCCCAAAGGCACAGGCTGTGGTTCTAGACCTTTAACTGGCTCT
CCCCCTCTCGTACCGTTTACCTCATCGCCCGCCTAATAACATGGGAAGGA
TGCAAAAAATGTGTGGAGGGATGGTGTTTGTGATGCCTCTTGGCCGCAAT
GCCCATCCTTACTCTACTCGAGGCGCATTGGAAAAAGTTGTACGGACATG
ACCGCACACAAATAACAAAATGGACAAATTACATGCTGGAGTACCTCGGC
AACTGCGCATCATATCGCCCATCGCTTGTTCCCGGTCCTTCTTCCGGTTT
GCTTCCCTCGCAAAGTCACGCTGCGCAAACAACACACAAACCCACAGCAC
CTCATCGCGACCATCACTATGGAGGGAAGCAGCACCGGTCGGGTTGTCGA
CGTCATGTCCAAGGCGCAATGGGATGCCTTGCTCAAAGGTAAAGTTTTGA
TGGTGATGGTGATGACGACGAAGCTTGTCCCCATATAGAACAAATTGCAC
TGGGTGCCTCTTACTGGCAGCGAAGCGCCCTTTCAAAGTCCCACGCCCGT
AGCCACACATACTATCTACATCTGTGAGTATCGCGATGCCTTTCCGTGGT
CGTATTAGTCCTCCACAAGCACCATAATCCCCATCCACTAGCAGCACAGC
ACATACATGCACTACAGCGTGATAGTACCATTCACAGGAGTCAAGCAGTC
GAGCGTTATCTCGGCATGACATGGTAGACGCGTTATGCTTCTGTTGGGCG
TGGTTGATGCTACTGCTATCATTTTTTGTGTGTAAAAATGGCACTTAACC
CCCCTAACTTTTCAGCATTTTTTTCGCACCCATCCTTCTAACCTATACCA
TCTCCACCACACAAGATGGCATCCCTGCCGTTGCCTTCTTCTGGGCCGAC
TGGCACGAACCATCCAAGCTTCAAGGGCAAATGGACTTAGTTTTCACGCA
CCTCGCCGCTCTTCACCCCTCTCTCCACTTTTTCCGGGTGGAGGCCGAGG
CCGTACCAGACGTCTCCGTCATCTTTAGCATAGCCGTCGTTCCCACCTTC
GTCTTTCTCCGGGAAGGCAAGATTACAGACAAACAAGAAGGAGCACACTC
TGCCGAGCTAGCTAAGAAAGTCCAGGCTTTTGCCGCAGCAGCTGCTTCCT
TGCCACCCCCCACTTCCGCCGGTGTCGACGCTTCCATACAGCAGCAGCAG
CAGCAACAGCAGCAACCTCTCACTGGCACGGACGGCAGCCTTGAGAACCG
TCTCAAGCGGTTAATCACCCAAGCTCCCGTGGTGGTCTTTATGAAGGGCT
CTCCCTCAAACCCTCGTTGCGGCTTCTCCCGCTCGCTTGTCGAGCTGCTT
AAATCTGAACAAATCGCCTTTGCCTCTTTCGACATTTTGGAAGACAATGA
GGTGAGACAAGGGTTGAAAGTCTACTCGGACTGGAAGACCTACCCTCAGC
TTTACGTCAACGGCGAGCTCGTAGGTGGGTTAGACATAGTGAAAGAAATG
GTGGTGGAGGGAGGGAACTCGGGTCGCCTCAAGGAAGAGCTGGGCATTAA
GGACGTCCCTCTTTCCTCCGTTCCCTCCGCCTCTTCTGCCCCCTCCTCCG
CCCCCTCCCTCGAAACCCGCCTCACGGCGCTTATCAACAAGGCCCCAGTC
ATGCTCTTTATGAAAGGAGATCCCGCGACACCCAGGTGTGGGTTTAGCAA
CCAGATGGTATCGATTTTGCAAAAAGCAGGCGTGGCCTTTGATACCTTCG
ACATCCTTAGCGACGAGGAAGTGAGGCAAGGGTTGAAGAAGCTCTCGCAG
TGGCCGACCTATCCCCAGTTGTACGTGAAAGGGGAATTGATCGGAGGGTT
GGACATTGTGAAGGAACTGCAGGAGACGGGGGAGTTAGAGAGTGCCTTGA
AGGGTTAGAGGGGAGGGAGGGAGGGAAGGGGAAGGGAGGGATGCAAGGAA
GGGAGGATATTGAAATGAAGGAAGAGGAGTAACAAAGTGCAC
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Coding sequence (CDS) from alignment at chr3:1355200..1357991+

>NO03G04770.1 ID=NO03G04770.1|Name=NO03G04770.1|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr3:1355200..1357991+ (Nannochloropsis oceanica)
ATGGAGGGAAGCAGCACCGGTCGGGTTGTCGACGTCATGTCCAAGGCGCA
ATGGGATGCCTTGCTCAAAGATGGCATCCCTGCCGTTGCCTTCTTCTGGG
CCGACTGGCACGAACCATCCAAGCTTCAAGGGCAAATGGACTTAGTTTTC
ACGCACCTCGCCGCTCTTCACCCCTCTCTCCACTTTTTCCGGGTGGAGGC
CGAGGCCGTACCAGACGTCTCCGTCATCTTTAGCATAGCCGTCGTTCCCA
CCTTCGTCTTTCTCCGGGAAGGCAAGATTACAGACAAACAAGAAGGAGCA
CACTCTGCCGAGCTAGCTAAGAAAGTCCAGGCTTTTGCCGCAGCAGCTGC
TTCCTTGCCACCCCCCACTTCCGCCGGTGTCGACGCTTCCATACAGCAGC
AGCAGCAGCAACAGCAGCAACCTCTCACTGGCACGGACGGCAGCCTTGAG
AACCGTCTCAAGCGGTTAATCACCCAAGCTCCCGTGGTGGTCTTTATGAA
GGGCTCTCCCTCAAACCCTCGTTGCGGCTTCTCCCGCTCGCTTGTCGAGC
TGCTTAAATCTGAACAAATCGCCTTTGCCTCTTTCGACATTTTGGAAGAC
AATGAGGTGAGACAAGGGTTGAAAGTCTACTCGGACTGGAAGACCTACCC
TCAGCTTTACGTCAACGGCGAGCTCGTAGGTGGGTTAGACATAGTGAAAG
AAATGGTGGTGGAGGGAGGGAACTCGGGTCGCCTCAAGGAAGAGCTGGGC
ATTAAGGACGTCCCTCTTTCCTCCGTTCCCTCCGCCTCTTCTGCCCCCTC
CTCCGCCCCCTCCCTCGAAACCCGCCTCACGGCGCTTATCAACAAGGCCC
CAGTCATGCTCTTTATGAAAGGAGATCCCGCGACACCCAGGTGTGGGTTT
AGCAACCAGATGGTATCGATTTTGCAAAAAGCAGGCGTGGCCTTTGATAC
CTTCGACATCCTTAGCGACGAGGAAGTGAGGCAAGGGTTGAAGAAGCTCT
CGCAGTGGCCGACCTATCCCCAGTTGTACGTGAAAGGGGAATTGATCGGA
GGGTTGGACATTGTGAAGGAACTGCAGGAGACGGGGGAGTTAGAGAGTGC
CTTGAAGGGTTAG
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Synonyms
Publications