NO03G04760.1, NO03G04760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G04760.1
Unique NameNO03G04760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1869
Alignment locationchr3:1353044..1355095 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1353044..1355095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G04760.1 vs.
Match: EWM29913.1 (hypothetical protein Naga_100035g20 [Nannochloropsis gaditana])

HSP 1 Score: 194.5 bits (493), Expect = 4.100e-46
Identity = 146/236 (61.86%), Postives = 163/236 (69.07%), Query Frame = 0 
Query:   26 PAASAASAATNISASNNGSNNIFPMPQPRRREDLQQQQQQQQQQQQQQPITPLSVTSGMIQAPEVMGSPMDLSSSSDDESSRDSRRGEGSDDGSSCNGGESRGASTLNSQEDLEELGGGGGGGREGEGGSPMFGASSTASVAPSVLSFVTSGGGGGGGSSLAGGPTPSVVDSLLVVGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSLLKPVSEPSGEGVGGKGGGGDE 262
            P  S    ++N   S +   +IFPMPQP  R+   QQQ    QQ QQ       ++SG   AP    + M+LSS+S+D SS      EG D+GSSCNG ESRG STLNSQED++ELGG GGG REG G SP +GAS TAS APSVLSF+TSG GGG  SS   G T SVVDSL+VVGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSS LKPVS P     GG G  GDE
Sbjct:  137 PLVSGPPGSSNTIGSGS---DIFPMPQPHPRKGQYQQQLSHLQQHQQ-------ISSGRGSAPVPTVAAMELSSNSEDSSSCSGSGDEGGDEGSSCNGIESRGGSTLNSQEDVDELGGPGGG-REGGGCSPSYGAS-TASTAPSVLSFMTSGAGGG--SSAGAGATASVVDSLVVVGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSFLKPVSGPP----GGGGSNGDE 354
The following BLAST results are available for this feature:
BLAST of NO03G04760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29913.14.100e-4661.86hypothetical protein Naga_100035g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G04760NO03G04760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G04760.1NO03G04760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G04760.1.cds1NO03G04760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G04760.1 ID=NO03G04760.1|Name=NO03G04760.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp
GGTTTTTCATAGTGATATTGCTGCATACTCTTGTCTCGTATGCTTTCTAA
GTTGCCTACCTTTAGCGAAAATCTTTCTTTCCGCATCCACAAAAATGATC
ATGCTCCCTTTACATACAATACTTCCACTACCTATTACATACTTCCACTT
TTTCTGATTCGCTATATCTGCATCCCATCCTCCTTCTCCTCCTCTCCTTC
TCTTTTGTTATGGCGTCTTCGCCAATCCGCCTCCGCTAGCTGAAGTGCTG
GCTCTGGCTCGAATCATCAGCATGGGTCATGTCACACAAACTGAGTCGTG
CTGCCTCTTGTGCTTGACAACACGCGCCTCTTGCATGTCAAAATATCCCG
TAAATTATCTTCGCACCAACCACTTCATTGTATCCAACATGCTGCGCAGG
CACTCGTCGTCATCCTTGTCGTCAAGACTAGCAAGCAAAGCCCAGCACTT
TCTTTTTTGCTTAACGCTTGCGGTCACCCCCTTTCCCTCGCCCCGTCAAA
CCCAACAACCAGTCCTGCCTCCATCATTACCACAACGCAAGCATGTCAAT
CGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTTCCAGCAGTTGCAGG
ACGTGGTGGCCTCGGCGAGGTAAGACAGTGTCCGGCGTGCTTTTTAATCA
CCGAGCTTGGTCCTCTGTCTCGGGAGCGGCAATGAGGCATGACCATCTCT
GACCTTGAATTGGCAATGTACAACCTCGTTTCCGTCGCAAACACCTTCAA
TGCTCCTCCACATCTCTCTCCCGCCTTTCACCCTCCCTTATTCCCTCAAC
CTGATTAACTCTCTCGTTACACCACAGTGACGACACCACCACGCCGCAGC
TCGCCCTGTCCTTCTTCAAAGAACGAGTGACGGGCAAAGGCAACCGGAAA
GCCCACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTACTACCTC
CTTTGAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACCTCTGCG
CCGATGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGCATATCA
GACCGCACGGAAATCAAGAATTTCTTCATGGCCAACAACCCCGCCAAACT
GGCAGGTGATCCATCAGCATCCTCCATCCGCACCGACCCTGGCTCTCTCA
TCCCGGCAGCTAGTGCTGCCTCTGCCGCTACGAACATCAGTGCCAGCAAC
AACGGCAGCAACAACATCTTTCCTATGCCACAGCCACGTCGACGAGAGGA
CCTTCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCCAA
TCACCCCCTTGAGTGTGACCTCGGGTATGATTCAGGCACCTGAAGTGATG
GGCTCGCCGATGGATTTAAGCAGCAGCAGCGACGACGAAAGCAGCAGAGA
TAGCCGTCGGGGGGAAGGGAGCGATGATGGCAGCAGTTGTAATGGTGGGG
AGAGCCGGGGAGCGAGCACACTCAATTCGCAGGAGGACTTGGAAGAGCTA
GGGGGAGGAGGGGGGGGAGGCAGGGAGGGAGAAGGGGGTTCTCCTATGTT
TGGTGCCAGCAGCACCGCATCGGTTGCCCCGAGTGTGTTGAGCTTTGTGA
CGAGTGGAGGGGGAGGAGGTGGGGGAAGCAGCCTTGCTGGAGGGCCGACG
CCGAGCGTGGTTGATAGTCTGTTGGTGGTAGGGTCGGTTGCCACCACGTT
GTCCAGCTATGATTCTACGGGATCTTTGTCGACGATAGAAAGCAGTGCAT
CGACAGAAGTCTCGCAACGACGGCCTTTTCAGCATCGATCTTCTTTGCTT
AAGCCCGTGTCCGAGCCATCAGGGGAAGGAGTGGGAGGGAAAGGAGGAGG
AGGGGACGAGGACAGGTAG
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protein sequence of NO03G04760.1

>NO03G04760.1-protein ID=NO03G04760.1-protein|Name=NO03G04760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MANNPAKLAGDPSASSIRTDPGSLIPAASAASAATNISASNNGSNNIFPM
PQPRRREDLQQQQQQQQQQQQQQPITPLSVTSGMIQAPEVMGSPMDLSSS
SDDESSRDSRRGEGSDDGSSCNGGESRGASTLNSQEDLEELGGGGGGGRE
GEGGSPMFGASSTASVAPSVLSFVTSGGGGGGGSSLAGGPTPSVVDSLLV
VGSVATTLSSYDSTGSLSTIESSASTEVSQRRPFQHRSSLLKPVSEPSGE
GVGGKGGGGDEDR*
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mRNA from alignment at chr3:1353044..1355095+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G04760.1 ID=NO03G04760.1|Name=NO03G04760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp|location=Sequence derived from alignment at chr3:1353044..1355095+ (Nannochloropsis oceanica)
GGTTTTTCATAGTGATATTGCTGCATACTCTTGTCTCGTATGCTTTCTAA
GTTGCCTACCTTTAGCGAAAATCTTTCTTTCCGCATCCACAAAAATGATC
ATGCTCCCTTTACATACAATACTTCCACTACCTATTACATACTTCCACTT
TTTCTGATTCGCTATATCTGCATCCCATCCTCCTTCTCCTCCTCTCCTTC
TCTTTTGTTATGGCGTCTTCGCCAATCCGCCTCCGCTAGCTGAAGTGCTG
GCTCTGGCTCGAATCATCAGCATGGGTCATGTCACACAAACTGAGTCGTG
CTGCCTCTTGTGCTTGACAACACGCGCCTCTTGCATGTCAAAATATCCCG
TAAATTATCTTCGCACCAACCACTTCATTGTATCCAACATGCTGCGCAGG
CACTCGTCGTCATCCTTGTCGTCAAGACTAGCAAGCAAAGCCCAGCACTT
TCTTTTTTGCTTAACGCTTGCGGTCACCCCCTTTCCCTCGCCCCGTCAAA
CCCAACAACCAGTCCTGCCTCCATCATTACCACAACGCAAGCATGTCAAT
CGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTTCCAGCAGTTGCAGG
ACGTGGTGGCCTCGGCGAGGTAAGACAGTGTCCGGCGTGCTTTTTAATCA
CCGAGCTTGGTCCTCTGTCTCGGGAGCGGCAATGAGGCATGACCATCTCT
GACCTTGAATTGGCAATGTACAACCTCGTTTCCGTCGCAAACACCTTCAA
TGCTCCTCCACATCTCTCTCCCGCCTTTCACCCTCCCTTATTCCCTCAAC
CTGATTAACTCTCTCGTTACACCACAGTGACGACACCACCACGCCGCAGC
TCGCCCTGTCCTTCTTCAAAGAACGAGTGACGGGCAAAGGCAACCGGAAA
GCCCACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTACTACCTC
CTTTGAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACCTCTGCG
CCGATGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGCATATCA
GACGTAAGTTCTGTCGTTGTACCTTGCGGCATGTTCGCGTAGTGCTATCC
TTGTGTTCATTCACGTAACTTCTTGAGAAGGGACGGACTGCCCTGCAAAC
TCCAGTGGTAGCTGCAACCCTCCACCGTAAATCTACACTCCTCTTCATTT
ATTTACCACCACCCACCACGCACCAACAATACACAGCGCACGGAAATCAA
GAATTTCTTCATGGCCAACAACCCCGCCAAACTGGCAGGTGATCCATCAG
CATCCTCCATCCGCACCGACCCTGGCTCTCTCATCCCGGCAGCTAGTGCT
GCCTCTGCCGCTACGAACATCAGTGCCAGCAACAACGGCAGCAACAACAT
CTTTCCTATGCCACAGCCACGTCGACGAGAGGACCTTCAGCAGCAGCAGC
AGCAACAACAACAGCAGCAGCAGCAGCAGCCAATCACCCCCTTGAGTGTG
ACCTCGGGTATGATTCAGGCACCTGAAGTGATGGGCTCGCCGATGGATTT
AAGCAGCAGCAGCGACGACGAAAGCAGCAGAGATAGCCGTCGGGGGGAAG
GGAGCGATGATGGCAGCAGTTGTAATGGTGGGGAGAGCCGGGGAGCGAGC
ACACTCAATTCGCAGGAGGACTTGGAAGAGCTAGGGGGAGGAGGGGGGGG
AGGCAGGGAGGGAGAAGGGGGTTCTCCTATGTTTGGTGCCAGCAGCACCG
CATCGGTTGCCCCGAGTGTGTTGAGCTTTGTGACGAGTGGAGGGGGAGGA
GGTGGGGGAAGCAGCCTTGCTGGAGGGCCGACGCCGAGCGTGGTTGATAG
TCTGTTGGTGGTAGGGTCGGTTGCCACCACGTTGTCCAGCTATGATTCTA
CGGGATCTTTGTCGACGATAGAAAGCAGTGCATCGACAGAAGTCTCGCAA
CGACGGCCTTTTCAGCATCGATCTTCTTTGCTTAAGCCCGTGTCCGAGCC
ATCAGGGGAAGGAGTGGGAGGGAAAGGAGGAGGAGGGGACGAGGACAGGT
AG
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Coding sequence (CDS) from alignment at chr3:1353044..1355095+

>NO03G04760.1 ID=NO03G04760.1|Name=NO03G04760.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr3:1353044..1355095+ (Nannochloropsis oceanica)
ATGGCCAACAACCCCGCCAAACTGGCAGGTGATCCATCAGCATCCTCCAT
CCGCACCGACCCTGGCTCTCTCATCCCGGCAGCTAGTGCTGCCTCTGCCG
CTACGAACATCAGTGCCAGCAACAACGGCAGCAACAACATCTTTCCTATG
CCACAGCCACGTCGACGAGAGGACCTTCAGCAGCAGCAGCAGCAACAACA
ACAGCAGCAGCAGCAGCAGCCAATCACCCCCTTGAGTGTGACCTCGGGTA
TGATTCAGGCACCTGAAGTGATGGGCTCGCCGATGGATTTAAGCAGCAGC
AGCGACGACGAAAGCAGCAGAGATAGCCGTCGGGGGGAAGGGAGCGATGA
TGGCAGCAGTTGTAATGGTGGGGAGAGCCGGGGAGCGAGCACACTCAATT
CGCAGGAGGACTTGGAAGAGCTAGGGGGAGGAGGGGGGGGAGGCAGGGAG
GGAGAAGGGGGTTCTCCTATGTTTGGTGCCAGCAGCACCGCATCGGTTGC
CCCGAGTGTGTTGAGCTTTGTGACGAGTGGAGGGGGAGGAGGTGGGGGAA
GCAGCCTTGCTGGAGGGCCGACGCCGAGCGTGGTTGATAGTCTGTTGGTG
GTAGGGTCGGTTGCCACCACGTTGTCCAGCTATGATTCTACGGGATCTTT
GTCGACGATAGAAAGCAGTGCATCGACAGAAGTCTCGCAACGACGGCCTT
TTCAGCATCGATCTTCTTTGCTTAAGCCCGTGTCCGAGCCATCAGGGGAA
GGAGTGGGAGGGAAAGGAGGAGGAGGGGACGAGGACAGGTAG
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Synonyms
Publications